rna9563, rna9563 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9563
Unique Name	rna9563
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2490
Alignment location	KK037254.1:180209..181696 +

Link to JBrowse

Properties


Property Name	Value
Product	elongation factor 1
Orig transcript id	gnl\|cribi\|Naga_100041g2.3696.mrna
Orig protein id	gnl\|cribi\|Naga_100041g2.3696
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:180209..181696 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g2	gene9284	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9563	rna9563-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21126.1	cds9532	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:180209..181696+
coding sequence from alignment at KK037254.1:180209..181696+

mRNA sequence

>rna9563 ID=rna9563|Name=rna9563|organism=Nannochloropsis gaditana|type=mRNA|length=2490bp
ATGGGAGCGGTCCGTGACGACGAATATCAGTTCGCGGTGGGACAGGCCCT
GGCGGCCTTGGCCTTGGGAGGGGACGTATGTGTATTTGCGTCGGTGTGGG
AGGGTGTTGTGGAGGGGAAGGTGAGAGACAACAGCCCGCACGTTCGGGCC
GCTGCCACCCTGTGGTTGCTGGTGCTGCTCTGGGAGGCGGCCGCGGCCTC
GGCTAGGGAGGGCGACATGGCGCGCGAGGTGCAGGTGCAAGAGAGCCACG
ACGCGACGGGGGCCCAGAGCGGGGCGGTGCAGGCGTCCGACGCATCGATT
CCCGCGGCGCAGACCGAGACCGACACGACCGCTCTTCTGTCCCTCCCGCG
CCTCTTGGAGGCACAGCAGGTCCTCGTCACGCTCCTGCGGGACAAGTCGG
AGCTGGGACAGGAGGCAAGCGGGAAGGCCTTGGGTGTGCTTTGCAGCCTC
GCCGGGCACGGCCCCCAGGTCTCCTCCTCTACCATCCCCTCCACTGCCCC
CTCCCCGAGCACGGCTCTTCAAGAGCTGACCAATGCCCTCGTCCTCCTCC
TCCGCGGTCCCTCCGCCACCGCCAACCCCACCCACCTGGAGCTCAACACG
CCTTCCTCCCAGCTCCCCCCCATCCAGACCAACATGGACGTGGGCACTCT
CAACCCCTTCCGCGAGCTCTGTGCCATGGCCACCGACCTCGGACAACCAC
AGCTCCTTTACTACTTCCTGGCCCTCCCCTCCACCCATCCCTCCTGGGCC
GGGCGCCGCGCCGGGCTGTACGCGAAGGGGACCCCCGGCCCCGCGGGGGA
GGGCAGAGAGGAGGAGCTCCAGCGTGCGCTCATGCCTCTACTCCCCCGTT
TGGTCCCTCGTCTCTACCGCGCCCGCTTCGACCCCACCCAGGCTGTCCGT
CAGGCAATGGAGCCGGTCTGGAAGAGTGTGCTTGCAGCGGCGGCAGTTGC
CGAAGGGGACGTAGAGGCGACCGGGCAGGGTAGCGAGCGAGGGGGGAGTG
GCAGTGGGAAGAAGGTGGTGAAAAAGTATTTGGATCCCATCCTGGACGAC
TTGTGTGAGGCTGCGGGGAGCCGTAAATGGCGAGAACGTCAGGCAGCGGT
GGCGGGCCTAGGAGAATTGATGCCGGGGCGGACGTTCAAGGAGGTAAGAG
GGAGACTGGAAAGACTGTGGATCATTGGCTTCCGCGCACTGGACGATTTG
AAGGAGTCAGTGCAGATGGCGGGCATGGACCTGGCCAAAGGCCTGCTGCA
GATGACGGGCAGGTTGAGCAACACGCAGGAGAGTCCCGCGGCGGAGGTGG
AGGAGGTGGTGCGAGTGATACTTCCGCTTTTGCTCTCGCAGGGGCTGCCG
AGCAAGGCAAAAGAGGTGCAGGGGGTGGCGGTCTTGGTGCTTCTGAGGGT
GGTCAAAGGGGCGGGCGCATGTCTGAGACCCTACTTGCCCGAGCTGATGA
GCGCCTTGATCGAGGCACAGTCGGCGATAGAGCCGGCGCAGCTCCAGTAC
ATGCAGTTCCACGCCCGGAGCATGGACATGACTGAGGAGGCGATGGAGCA
ACTCCGCTACGGTCTCTCTCGTAGCGGCCCCCTTCAAGAAGCCCTCGACA
TCTGCATGAAAGAACTCGACGGCCCCTCCCTCTCCCGGCTTATGCCCTCC
CTCCTCCTCCAACTCCGGTCTGGCGTCGGCCTCAACACGCGCTGTTGCGC
CGCCAATTTAGTCCTGGTCCTGAGCACCCGCTTCCGGCCCGAGCTCAAAG
TCCATCTCCCCGCCCTCCTTCGCGTCCTTGCCGCCGGGGCCCTGGCTGAG
CGGAGCAGCACCGCCCAGCGCTTTTTCCTCTCTGCCCTCGCCGGCGTGGC
CAAGCTGGCTCCGGGGGGGGAAGAGGTCCGGCGCGCGATCCTCCGCCTGC
TCCGAGAGTACCGACGGGTAGCAGACTTGGCCACGCATCGATCGCAACGA
CTCCCCGTGGTCTTGGCGCTTCGACAGCTTTGCACGGCCGCGGGGGAGGG
CCTTGAGGAAGCGGCGTGGGCGGCGGTGTTGCCCTTGGCCTACGTCGGCC
GCTTTGAGGAAGAGGAAGGAGGGGAGGGCGAGGTACGGAAAGCGTGGCAG
GAGATCTGGATGGAGGGCTGTGCGGCGCTGGGGAAAGGTGGAGGGAACAC
GACCAAAGCCCTGGGTGATGAGCTGTGTACAGAGGTGGAAAGGGAGCTGA
GGTCGTCGTCGTGGTCGGGGAGGAGGGCCGCTTTGAAGGCCCTGGCCTCT
CTGAGCGAGGGCCTGGGCCGCGGAGGGCTGAGGCTGCACGCGAGGAGGCT
GGTGGGGGAGCTGCTGGACTTACTGCCAGGGCGGTTGTGGGAAGGGAAGG
ACGAGGTGCTGCGGGCGCTGGTGAAGGTAGTAGTGGCCTGTCCGGGGCTG
CTTCGAGAAGGGGGGGGGGGGAAGGATGGTTGTTCTGGGAGGAGTCGGGG
GGGGGGGCAGGGAGAGGGTATTTCCCTCCAGGGCTGTTGA

protein sequence of rna9563

>rna9563-protein ID=rna9563-protein|Name=rna9563|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MALKLYTNPGNFRAFKILVAALYNGVDIDVVDLDLAAKKRTDVLAKSPAG
KVPVLETPQGLLFESNAIARYIARARRDTDLYGVSFFDSGLVDAWIDFAA
QEVELPATLWVYPVFGYLPHNAAVTEKAKADLGAAMEILDNHLADKTYLV
GEKVTLADITVASALVYPYKIVMSPEYRAQYPHVLRWFLTIVNQPHFRAV
IGDVVLAEKELVPSGAPPALALPAKGAGKKEKKEKKEKAAAPKQEKKKEE
APAKTGEDLEEQLAKEEKKKAAEHPLKILDRESPSEFVMDTWKKTYSNAR
SYDQAMDEFWKVFDSLGYSLWFCNYQYNSELTKLFMTCNLVSGFVQRTDE
LRKWAFGCMWILGEDAPGKMEIRGLWLMRGQSDSYIKSANPDAEFYTWTK
VPTPVSDEDKKKVQEYWCSDDSLAGLPVLDCKVFK

mRNA from alignment at KK037254.1:180209..181696+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9563 ID=rna9563|Name=rna9563|organism=Nannochloropsis gaditana|type=mRNA|length=1488bp|location=Sequence derived from alignment at KK037254.1:180209..181696+ (Nannochloropsis gaditana)
ATGGCTCTGGTAAGTGATGAGAGTTTGCGTGGAACATGGCTGCACATGCC
CGTCATCATTTCTGTCTCTTTTGAACCTATGCAAATGACGCGGCACCGAC
GCCTAGCCTGCGATGAGAATTGAAAGGTCAAGAGGAAATAAGCTCGCTGC
CTTTTTTCTAAGTAGCCCCACCATTTTGTATTCCCCCAGAAACTTTACAC
AAACCCGGGCAACTTCCGTGCTTTTAAGATCCTCGTCGCTGCGCTTTACA
ATGGAGTGGACATTGATGTGGTGGACCTGGATTTGGCTGCCAAGAAAAGA
ACAGATGTATTAGCCAAATCTCCCGCTGGCAAAGTTCCTGTGCTGGAGAC
CCCGCAGGGTCTGTTGTTCGAGAGCAACGCCATTGCCCGCTATATCGCTC
GAGCCCGGCGTGACACAGACTTATACGGGGTCTCCTTCTTTGACTCCGGC
CTGGTCGATGCTTGGATCGACTTCGCTGCTCAGGAAGTAGAGCTCCCTGC
TACGCTGTGGGTGTACCCTGTGTTCGGCTACCTCCCCCACAACGCCGCGG
TGACGGagaaggccaaggcggaTCTGGGCGCGGCCATGGAGATCCTAGAC
AACCACCTTGCCGATAAGACGTACCTCGTCGGGGAGAAAGTGACACTTGC
AGACATCACGGTGGCCTCTGCCTTGGTCTACCCGTACAAGATCGTCATGA
GCCCCGAGTACCGCGCCCAGTAcccgcacgtcctccgcTGGTTCCTGACC
ATCGTCAACCAGCCTCACTTCCGGGCCGTGATCGGGGACGTGGTcttggc
ggagaaagagctCGTGCCCTCGGGCGCACCGCCTGCCCTGGCGTTGCCGG
CGAAGGGtgcagggaagaaggaaaagaaggaaaagaaggagaaagcggcg
gcgccaaagcaagagaagaagaaggaagaagcaccCGCCAAGACGGGGGA
AGACCTAGAGGAGCAGttggcaaaggaggagaaaaagaaggcggcAGAAC
ATCCACTGAAGATCCTGGACCGGGAGTCCCCCTCGGAGTTCGTGATGGAC
acctggaagaagacgtacTCGAACGCCAGGTCCTACGACCAGGCTATGGA
CGAGTTCTGGAAGGTCTTCGACAGCCTGGGGTACTCCCTCTGGTTTTGCA
ATTATCAGTACAACAGCGAGCTGACCAAGCTCTTCATGACCTGCAATCTG
GTGAGCGGCTTTGTGCAACGGACGGACGAACTGCGGAAGTGGGCGTTCGG
ATGCATGTGGATCCTGGGCGAGGACGCTCcggggaagatggagatCCGGG
GGCTCTGGCTGATGCGCGGGCAGTCGGATTCCTACATTAAGAGCGCCAAC
CCGGACGCCGAGTTCTACACCTGGACCAAGGTGCCGACCCCAGTCTCtga
cgaggacaagaagaaagtgCAAGAATACTGGTGCAGTGACGACTCATTGG
CGGGGCTGCCTGTGTTGGACTGCAAGGTCTTTAAGTAA

Coding sequence (CDS) from alignment at KK037254.1:180209..181696+

>rna9563 ID=rna9563|Name=rna9563|organism=Nannochloropsis gaditana|type=CDS|length=2616bp|location=Sequence derived from alignment at KK037254.1:180209..181696+ (Nannochloropsis gaditana)
ATGGCTCTGAAACTTTACACAAACCCGGGCAACTTCCGTGCTTTTAAGAT
CCTCGTCGCTGCGCTTTACAATGGAGTGGACATTGATGTGGTGGACCTGG
ATTTGGCTGCCAAGAAAAGAACAGATGTATTAGCCAAATCTCCCGCTGGC
AAAGTTCCTGTGCTGGAGACCCCGCAGGGTCTGTTGTTCGAGAGCAACGC
CATTGCCCGCTATATCGCTCGAGCCCGGCGTGACACAGACTTATACGGGG
TCTCCTTCTTTGACTCCGGCCTGGTCGATGCTTGGATCGACTTCGCTGCT
CAGGAAGTAGAGCTCCCTGCTACGCTGTGGGTGTACCCTGTGTTCGGCTA
CCTCCCCCACAACGCCGCGGTGACGGagaaggccaaggcggaTCTGGGCG
CGGCCATGGAGATCCTAGACAACCACCTTGCCGATAAGACGTACCTCGTC
GGGGAGAAAGTGACACTTGCAGACATCACGGTGGCCTCTGCCTTGGTCTA
CCCGTACAAGATCGTCATGAGCCCCGAGTACCGCGCCCAGTAcccgcacg
tcctccgcTGGTTCCTGACCATCGTCAACCAGCCTCACTTCCGGGCCGTG
ATCGGGGACGTGGTcttggcggagaaagagctCGTGCCCTCGGGCGCACC
GCCTGCCCTGGCGTTGCCGGCGAAGGGtgcagggaagaaggaaaagaagg
aaaagaaggagaaagcggcggcgccaaagcaagagaagaagaaggaagaa
gcaccCGCCAAGACGGGGGAAGACCTAGAGGAGCAGttggcaaaggagga
gaaaaagaaggcggcAGAACATCCACTGAAGATCCTGGACCGGGAGTCCC
CCTCGGAGTTCGTGATGGACacctggaagaagacgtacTCGAACGCCAGG
TCCTACGACCAGGCTATGGACGAGTTCTGGAAGGTCTTCGACAGCCTGGG
GTACTCCCTCTGGTTTTGCAATTATCAGTACAACAGCGAGCTGACCAAGC
TCTTCATGACCTGCAATCTGGTGAGCGGCTTTGTGCAACGGACGGACGAA
CTGCGGAAGTGGGCGTTCGGATGCATGTGGATCCTGGGCGAGGACGCTCc
ggggaagatggagatCCGGGGGCTCTGGCTGATGCGCGGGCAGTCGGATT
CCTACATTAAGAGCGCCAACCCGGACGCCGAGTTCTACACCTGGACCAAG
GTGCCGACCCCAGTCTCtgacgaggacaagaagaaagtgCAAGAATACTG
GTGCAGTGACGACTCATTGGCGGGGCTGCCTGTGTTGGACTGCAAGGTCT
TTAAGTAAATGGCTCTGAAACTTTACACAAACCCGGGCAACTTCCGTGCT
TTTAAGATCCTCGTCGCTGCGCTTTACAATGGAGTGGACATTGATGTGGT
GGACCTGGATTTGGCTGCCAAGAAAAGAACAGATGTATTAGCCAAATCTC
CCGCTGGCAAAGTTCCTGTGCTGGAGACCCCGCAGGGTCTGTTGTTCGAG
AGCAACGCCATTGCCCGCTATATCGCTCGAGCCCGGCGTGACACAGACTT
ATACGGGGTCTCCTTCTTTGACTCCGGCCTGGTCGATGCTTGGATCGACT
TCGCTGCTCAGGAAGTAGAGCTCCCTGCTACGCTGTGGGTGTACCCTGTG
TTCGGCTACCTCCCCCACAACGCCGCGGTGACGGagaaggccaaggcgga
TCTGGGCGCGGCCATGGAGATCCTAGACAACCACCTTGCCGATAAGACGT
ACCTCGTCGGGGAGAAAGTGACACTTGCAGACATCACGGTGGCCTCTGCC
TTGGTCTACCCGTACAAGATCGTCATGAGCCCCGAGTACCGCGCCCAGTA
cccgcacgtcctccgcTGGTTCCTGACCATCGTCAACCAGCCTCACTTCC
GGGCCGTGATCGGGGACGTGGTcttggcggagaaagagctCGTGCCCTCG
GGCGCACCGCCTGCCCTGGCGTTGCCGGCGAAGGGtgcagggaagaagga
aaagaaggaaaagaaggagaaagcggcggcgccaaagcaagagaagaaga
aggaagaagcaccCGCCAAGACGGGGGAAGACCTAGAGGAGCAGttggca
aaggaggagaaaaagaaggcggcAGAACATCCACTGAAGATCCTGGACCG
GGAGTCCCCCTCGGAGTTCGTGATGGACacctggaagaagacgtacTCGA
ACGCCAGGTCCTACGACCAGGCTATGGACGAGTTCTGGAAGGTCTTCGAC
AGCCTGGGGTACTCCCTCTGGTTTTGCAATTATCAGTACAACAGCGAGCT
GACCAAGCTCTTCATGACCTGCAATCTGGTGAGCGGCTTTGTGCAACGGA
CGGACGAACTGCGGAAGTGGGCGTTCGGATGCATGTGGATCCTGGGCGAG
GACGCTCcggggaagatggagatCCGGGGGCTCTGGCTGATGCGCGGGCA
GTCGGATTCCTACATTAAGAGCGCCAACCCGGACGCCGAGTTCTACACCT
GGACCAAGGTGCCGACCCCAGTCTCtgacgaggacaagaagaaagtgCAA
GAATACTGGTGCAGTGACGACTCATTGGCGGGGCTGCCTGTGTTGGACTG
CAAGGTCTTTAAGTAA

Synonyms

Publications