rna9549, rna9549 (mRNA) Nannochloropsis gaditana

Overview
Namerna9549
Unique Namerna9549
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length360
Alignment locationKK037254.1:151315..153448 -

Link to JBrowse

Properties
Property NameValue
Product6-pyruvoyl tetrahydropterin synthase/QueD family protein
Orig transcript idgnl|cribi|Naga_100108g17.7742.mrna
Orig protein idgnl|cribi|Naga_100108g17.7742
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:151315..153448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100108g17gene9271Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9549rna9549-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21157.1cds9518Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9549 ID=rna9549|Name=rna9549|organism=Nannochloropsis gaditana|type=mRNA|length=360bp
ATGGTGTCATTGTCCAGTAGGGGTGGGCAGGAGGGGAAGCGGCGCCTGCA
GCTCCTGCTTCCCGCTCTTCAGGCGGCGGCGGCATGGGTTAAGGCCTGCA
TTCCCGTCGTCGTGGAAGCCCTGCGGCTTCTGGACCGTTTGTGCCTCCTT
AAGTCCGTGCGCCGGGGCCTTGTGGCGCTCTGGCGCGCCGACGCCCTGTG
TCTGCGCGGTTGCCGGACGGGCACGAGGACTATATGTCCATTCGCTGCCG
GAAATGCGGTGGGAAACTCGCGGTTTGCATGTGAGATGTTAAGGAAGGGA
GGACACAGCGCTCTGACCGACAGGGTGGGATTGCCTGACAGTGTGCATAC
TTCCATGTGA
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protein sequence of rna9549

>rna9549-protein ID=rna9549-protein|Name=rna9549|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MLVGKALPVLFSVFLVITTLINIVVDAASGFPFSLGIRDSIMIAHSFKGE
QFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNF
KNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKL
WESHKAWACYEAIV
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mRNA from alignment at KK037254.1:151315..153448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9549 ID=rna9549|Name=rna9549|organism=Nannochloropsis gaditana|type=mRNA|length=2134bp|location=Sequence derived from alignment at KK037254.1:151315..153448- (Nannochloropsis gaditana)
GACATGGGCAATCCCCACGTGCCGCGCCTTAGGTCGCGACGAGTACGCCT
TTACAAGCTACGATTGATTGTATGGGCATACAGGTAACGGCGTGCTCAAC
GGAGCATGTACGACTTGCGCTGTGATATACAGGAAAGCCAACGCACAATC
AAACGTACCGGGAGACATTGCTCTGCTCTCACACATCAAATTCACGGGCT
GCATCATGAGATGCGTATCCCGCGCACATCTTTGGGTGTGACAACATGGC
ATTGGAGTCTTGAGGGCATTACAACCTCGCAAAGTCGACAACCTTCAAGC
GCTCAAATTGCAGGGATTCGGAGTGGGTAGTCCTCGAACCCGTTCCTCAT
CCTGTTACCCGCGACTTTTCACCTCAGCATGCCCCTCTTGTGCATTCACT
CTCATATAATACAGTGGTAGCAGCAGAGCAACCGGGTGTCATGGCCACAT
TAAGCCCGCCCATCTCAGCGCTGATTGCGTGGACTGTTATATGTGGAACG
GTAATCGTTCTCACGAACATCGCGAAGGTCACAAAATACATCGACAAGGA
CAATGCAGGGTACGTTGGCAGCAACTTATGTAAAGTGGGTGCTTCTAAGA
TGCTCGGATTCCAATTGAAATGCCCATTTCGTACGTGTGAACAGGATTGC
CGTGGTATTCACGATTACCGCTGGGATCTGCACTTTTATACTCTGGTAAT
TTTTTTTTAATGTGAATAAGTTTTTCGCGCGCTGCCTCATAATCAAAATT
TCATTTTTCCCATGAGATCCTTCTGGCTCGTAACTAAATGGCATATTCCT
TTCCACCTTCGTGTTCGCGTCTCCAGGTTGGTCACGTGGATGCAGCAATG
GCACCCGCTTTTGACGCCTACCCTCCCTGCCAAGTAAGTTTCACTGGGCT
GCAACTCAATCATTTCACATGCAGCGTCCGATTTGGGCATGAGGATGGCT
TGTATAAGGAGAGGGCCTCCCATTCTACTTCGTTTTCGCAATCACGTATT
TAAGAGCATTTCTCGCCACTCCTGACCACCGCAACAGGGAATGAAGCTGT
GGGTCGCGTACGACTTTTTTTCACTCGTCGGAGGCCGTTAGCTTGTGTAT
CTATTTGCATTCAAGAGAGCGGGGGTTCAGGAAGATGTGACATCCAAGAA
GATGAAAATTTATCACGGGGAAAAGCAAAGAACAAATTTGTTCACGGCAT
GATGCCGACCACCATGTGCTTTTTTCTTCATGGTCGGCTCGCAAATTGAC
TTGATTTGTCCAGTTCCACACGGTGATTTCGCATTGCTTTGACGGCGCGG
GGCGCACTGGAAAGCAACCTCTCAACCTCCTGCCCCCTCCCTGGAGGGCC
GCACATAGACCAACTAAGGACACCGCCCGCGCTGTTGTTCCGATGCCGGT
AGCTGCTCAATTATTTCTCGTATCTATACAGTCTAGAAATATAGCAGTTT
GTTGTGCAAGGGACGCCTTGCTCGAAGGGTGTCATGTTGGTTGGCAAGGT
ACGTTGACGTAACCTCCTCGGCTCCGTCTCTCTTCAGCGCCGATTTAATT
ACACTTCCCTACCAAAATGTACACCCATCAGGCGCTTCCTGTCCTCTTCT
CCGTCTTCCTGGTCATAACAACACTCATTAATATCGTCGTGGATGCTGCA
TCGGGCTTCCCTTTCTCTCTGGGTATCCGGGACAGCATCATGATTGCTCA
TTCATTCAAGGGGGAGCAGTTTGGCCCCGCTCAAAATATTCACGGTGCCA
CGTACACCGTGGACGTTACCTTCCGTAGTAAAAACCTGGTGCCGAAAAAC
AATTGGGTAATTGACATCGGGGAGGCGTCCACGGCGCTGAGCCGCATTCT
AAGCAAGTACAACTTTAAAAACCTAGACCAGGTCTTCCCCGAGGGGGAGA
ACACGACGACGGAGTTCATGTGCCGTGCCATCCACCGAGACTTGGCTGCG
CATTTTTGCACCAATCGGGCCAAGAGCAAGGAAGAGCGTTTCAAGGGCTC
CATTTGTGTCAAGCTTTGGGAGAGTCACAAAGCGTGGGCTTGTTATGAGG
CCATTGTCTGAGGAGACGGGACGAAGGATGCTGGGCTTACAAGGGGGGGA
AGGAAATTACTACCGCAAAATTAAATCCTAGACT
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Coding sequence (CDS) from alignment at KK037254.1:151315..153448-

>rna9549 ID=rna9549|Name=rna9549|organism=Nannochloropsis gaditana|type=CDS|length=990bp|location=Sequence derived from alignment at KK037254.1:151315..153448- (Nannochloropsis gaditana)
GCGCTTCCTGTCCTCTTCTCCGTCTTCCTGGTCATAACAACACTCATTAA
TATCGTCGTGGATGCTGCATCGGGCTTCCCTTTCTCTCTGGGTATCCGGG
ACAGCATCATGATTGCTCATTCATTCAAGGGGGAGCAGTTTGGCCCCGCT
CAAAATATTCACGGTGCCACGTACACCGTGGACGTTACCTTCCGTAGTAA
AAACCTGGTGCCGAAAAACAATTGGGTAATTGACATCGGGGAGGCGTCCA
CGGCGCTGAGCCGCATTCTAAGCAAGTACAACTTTAAAAACCTAGACCAG
GTCTTCCCCGAGGGGGAGAACACGACGACGGAGTTCATGTGCCGTGCCAT
CCACCGAGACTTGGCTGCGCATTTTTGCACCAATCGGGCCAAGAGCAAGG
AAGAGCGTTTCAAGGGCTCCATTTGTGTCAAGCTTTGGGAGAGTCACAAA
GCGTGGGCTTGTTATGAGGCCATTGTCTGAATGTTGGTTGGCAAGGCGCT
TCCTGTCCTCTTCTCCGTCTTCCTGGTCATAACAACACTCATTAATATCG
TCGTGGATGCTGCATCGGGCTTCCCTTTCTCTCTGGGTATCCGGGACAGC
ATCATGATTGCTCATTCATTCAAGGGGGAGCAGTTTGGCCCCGCTCAAAA
TATTCACGGTGCCACGTACACCGTGGACGTTACCTTCCGTAGTAAAAACC
TGGTGCCGAAAAACAATTGGGTAATTGACATCGGGGAGGCGTCCACGGCG
CTGAGCCGCATTCTAAGCAAGTACAACTTTAAAAACCTAGACCAGGTCTT
CCCCGAGGGGGAGAACACGACGACGGAGTTCATGTGCCGTGCCATCCACC
GAGACTTGGCTGCGCATTTTTGCACCAATCGGGCCAAGAGCAAGGAAGAG
CGTTTCAAGGGCTCCATTTGTGTCAAGCTTTGGGAGAGTCACAAAGCGTG
GGCTTGTTATGAGGCCATTGTCTGAATGTTGGTTGGCAAG
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Synonyms
Publications