EWM21157.1, cds9518 (CDS) Nannochloropsis gaditana

Overview
NameEWM21157.1
Unique Namecds9518
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:151951..151965 -
Alignment locationKK037254.1:151388..151867 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21157.1
Product6-pyruvoyl tetrahydropterin synthase/QueD family protein
Orig transcript idgnl|cribi|Naga_100108g17.7742.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:151951..151965 -
KK037254.1supercontigKK037254.1:151388..151867 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR0071156-PTP_synth/QueD
Homology
BLAST of EWM21157.1 vs. NCBI_GenBank
Match: gi|553179280|ref|XP_005852675.1| (queuosine biosynthesis protein [Nannochloropsis gaditana CCMP526] >gi|422295854|gb|EKU23153.1| queuosine biosynthesis protein [Nannochloropsis gaditana CCMP526] >gi|585101227|gb|EWM21157.1| 6-pyruvoyl tetrahydropterin synthase/QueD family protein [Nannochloropsis gaditana])

HSP 1 Score: 342.428 bits (877), Expect = 2.358e-119
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query:    1 MLVGKALPVLFSVFLVITTLINIVVDAASGFPFSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYEAIV 164
            MLVGKALPVLFSVFLVITTLINIVVDAASGFPFSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYEAIV
Sbjct:    1 MLVGKALPVLFSVFLVITTLINIVVDAASGFPFSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYEAIV 164          
BLAST of EWM21157.1 vs. NCBI_GenBank
Match: gi|299471326|emb|CBN79282.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 175.637 bits (444), Expect = 2.031e-53
Identity = 83/132 (62.88%), Postives = 102/132 (77.27%), Query Frame = 0
Query:   33 FSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYEAIV 164
            +SLGIRDSIMIAHSF+G QFGPAQ +HGATYTVD  F++  LV K+NWV+DIG AS  L+ +LSKYNFKNL+++FP G+NTTTEFMC+ I  +LAA  C        + F G++C+KLWESHKAW CYE  V
Sbjct:   33 YSLGIRDSIMIAHSFEGPQFGPAQEMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLAAVLSKYNFKNLNEIFP-GQNTTTEFMCKVIFDELAAK-CG-------KDFHGTLCIKLWESHKAWGCYEGDV 155          
BLAST of EWM21157.1 vs. NCBI_GenBank
Match: gi|551658564|ref|XP_005832052.1| (hypothetical protein GUITHDRAFT_152839 [Guillardia theta CCMP2712] >gi|428176186|gb|EKX45072.1| hypothetical protein GUITHDRAFT_152839 [Guillardia theta CCMP2712])

HSP 1 Score: 168.318 bits (425), Expect = 4.334e-50
Identity = 79/133 (59.40%), Postives = 97/133 (72.93%), Query Frame = 0
Query:   28 ASGFPFSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACY 160
              G  +SLG+RDSIMIAHSF G++FGPAQN+HGATYTVDV F  ++L P+ NWV+DIGE  T L ++L +YNFKNL+++FP GENTTTEFMC+ I   L            + +FKGSI VKLWESH AWA Y
Sbjct:   58 GGGERYSLGLRDSIMIAHSFTGKEFGPAQNMHGATYTVDVEFHVESLAPRLNWVLDIGEGMTMLKKVLGEYNFKNLNELFP-GENTTTEFMCKKIFEGLCVEL--------KGKFKGSITVKLWESHSAWASY 181          
BLAST of EWM21157.1 vs. NCBI_GenBank
Match: gi|219118272|ref|XP_002179914.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408967|gb|EEC48900.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 161.77 bits (408), Expect = 5.022e-48
Identity = 80/155 (51.61%), Postives = 101/155 (65.16%), Query Frame = 0
Query:   12 SVFLVITTLINIVVDAA-SGFPFSLGIRDSIMIAHSF-KGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYEAIV 164
            S+FL +    ++ +    +G  F LGIRDS+MIAHSF +   FGPA  +HGATYT DV F    L P  NWV+DIG+AS  L  +L+KYN KNLD+VFP G+ TTTEFMC+ IH DL      +  + +   F G +CVKLWESHKAWA Y  +V
Sbjct:    6 SLFLGVYAFYSVCIRLVFAGRSFRLGIRDSLMIAHSFHRHPAFGPAGGMHGATYTCDVEFSKDTLDPDTNWVMDIGKASELLCTVLAKYNLKNLDEVFPNGQLTTTEFMCKQIHMDL-----VDLIRREFHDFHGEVCVKLWESHKAWAAYSGVV 155          
BLAST of EWM21157.1 vs. NCBI_GenBank
Match: gi|1072230867|gb|OEU15600.1| (tetrahydrobiopterin biosynthesis enzymes-like protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 155.221 bits (391), Expect = 9.144e-46
Identity = 76/132 (57.58%), Postives = 94/132 (71.21%), Query Frame = 0
Query:   33 FSLGIRDSIMIAHSFKGE-QFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYEAI 163
            FSLG++DS+MIAHSF G   FGPA  +HGATYT DV F SK L P+ NWVIDIG+A   LS++LS+YN KNLD VFP+   TTTEFMC+ IH D+         + + + FKG++ VKLWESHKAWA Y  +
Sbjct:    1 FSLGVKDSLMIAHSFHGHPSFGPAGGLHGATYTADVEFLSKELHPEFNWVIDIGKALDILSKVLSRYNLKNLDDVFPDNIMTTTEFMCKQIHDDIC-----RLLEDECKDFKGAVRVKLWESHKAWATYTGL 127          
BLAST of EWM21157.1 vs. NCBI_GenBank
Match: gi|545708076|ref|XP_005706351.1| (6-pyruvoyl tetrahydropterin synthase [Galdieria sulphuraria] >gi|452822815|gb|EME29831.1| 6-pyruvoyl tetrahydropterin synthase [Galdieria sulphuraria])

HSP 1 Score: 149.443 bits (376), Expect = 1.381e-43
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 0
Query:   33 FSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFP-EGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYEA 162
            ++LG+RDS MIAHSF+GE FGPAQ +HGATYTVD  FRS NL P+ NWVIDIGEA+  L  +LS YN++NLDQ+   +G+NTTTE++ R IH  +        +K+K   F+G + V L ES +AWA YE+
Sbjct:    2 YTLGVRDSFMIAHSFQGEAFGPAQGLHGATYTVDCEFRSTNLQPQLNWVIDIGEATQILKDVLSLYNYRNLDQLEEFQGQNTTTEYLARVIHDKVL-------SKAKMLGFQGILKVSLMESFRAWASYES 125          
BLAST of EWM21157.1 vs. NCBI_GenBank
Match: gi|1189382632|gb|OSX70073.1| (hypothetical protein BU14_0930s0005 [Porphyra umbilicalis])

HSP 1 Score: 140.198 bits (352), Expect = 7.693e-40
Identity = 66/131 (50.38%), Postives = 92/131 (70.23%), Query Frame = 0
Query:   31 FPFSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFP-EGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACY 160
             PFS+G+R+S+MIAHSFKGE+FGPAQ  HGATYT+D  + +K LV   NWV++I +A+ AL  +++++N++NLD+V   +G+NTTTEF+  AIH  LA    +         F G++ V L ESHKAWA Y
Sbjct:    1 MPFSVGVRESLMIAHSFKGEEFGPAQRTHGATYTIDAEWSAKELVSGVNWVLNIADAADALEAVVAEWNYRNLDEVAAFDGQNTTTEFLSHAIHSALAKRLPS---------FVGTLKVTLQESHKAWASY 122          
BLAST of EWM21157.1 vs. NCBI_GenBank
Match: gi|397629228|gb|EJK69264.1| (hypothetical protein THAOC_09485, partial [Thalassiosira oceanica])

HSP 1 Score: 140.584 bits (353), Expect = 7.906e-39
Identity = 72/136 (52.94%), Postives = 90/136 (66.18%), Query Frame = 0
Query:   31 FPFSLGIRDSIMIAHSFKGE-QFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAK---SKEERFKGSICVKLWESHKAWACYEA 162
             PF+L IRDSIMIAHSF G   FGPA  +HGATYTVDV F S+ L P+ NWVIDIG AS  ++ +L KYN++NLD VF +   TTTEFMC+ IH  +       R     S +  F+G + V L+ESHKAWA ++ 
Sbjct:   84 LPFTLAIRDSIMIAHSFHGHPSFGPAGGLHGATYTVDVEFASEALHPECNWVIDIGLASDLVADVLKKYNYQNLDVVFGKKIMTTTEFMCKEIHTRVVERLREKRQSEDGSDDNDFRGWVKVTLFESHKAWASFDG 219          
BLAST of EWM21157.1 vs. NCBI_GenBank
Match: gi|224000597|ref|XP_002289971.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975179|gb|EED93508.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 138.272 bits (347), Expect = 3.045e-38
Identity = 69/133 (51.88%), Postives = 86/133 (64.66%), Query Frame = 0
Query:   31 FPFSLGIRDSIMIAHSFKGE-QFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYEA 162
             P +L IRDS+MIAHSF     FGPA  +HGATYTVDV F S  L  + NWVIDIG AS  ++ +L++YN+KNLD+VF +   TTTEFMCRAI   +        +    + F+G I V LWESHKAW  +E 
Sbjct:   57 LPHTLTIRDSLMIAHSFHSHPSFGPAGGLHGATYTVDVEFASSTLHKECNWVIDIGVASAMVAEVLTEYNYKNLDEVFGDNVMTTTEFMCRAIFDGVVKKLKERYSDIDVDHFEGWIKVTLWESHKAWGSFEG 189          
BLAST of EWM21157.1 vs. NCBI_GenBank
Match: gi|517699988|ref|WP_018870196.1| (MULTISPECIES: 6-carboxytetrahydropterin synthase [Thioalkalivibrio] >gi|1145562242|gb|OOC10732.1| hypothetical protein B1A74_04015 [Thioalkalivibrio halophilus])

HSP 1 Score: 131.339 bits (329), Expect = 2.233e-36
Identity = 69/131 (52.67%), Postives = 84/131 (64.12%), Query Frame = 0
Query:   33 FSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFP-EGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYEA 162
            +SL +RD  MIAHSF GE FGPAQN+HGATY VDVTFR   L   +  V+DIG A   L  IL++ N++NLD     EG+NTTTEF+ RAIH  +A      R  +   R   ++CV L ESH AWA YEA
Sbjct:    2 YSLNVRDHFMIAHSFAGEVFGPAQNLHGATYVVDVTFRRAEL-DDDGLVVDIGRAGEVLRSILAELNYQNLDDRPEFEGQNTTTEFLARAIHGRIATAIHEERLGAS-ARGLDAVCVTLHESHVAWAAYEA 130          
The following BLAST results are available for this feature:
BLAST of EWM21157.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179280|ref|XP_005852675.1|2.358e-119100.00queuosine biosynthesis protein [Nannochloropsis ga... [more]
gi|299471326|emb|CBN79282.1|2.031e-5362.88conserved unknown protein [Ectocarpus siliculosus][more]
gi|551658564|ref|XP_005832052.1|4.334e-5059.40hypothetical protein GUITHDRAFT_152839 [Guillardia... [more]
gi|219118272|ref|XP_002179914.1|5.022e-4851.61predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072230867|gb|OEU15600.1|9.144e-4657.58tetrahydrobiopterin biosynthesis enzymes-like prot... [more]
gi|545708076|ref|XP_005706351.1|1.381e-4354.966-pyruvoyl tetrahydropterin synthase [Galdieria su... [more]
gi|1189382632|gb|OSX70073.1|7.693e-4050.38hypothetical protein BU14_0930s0005 [Porphyra umbi... [more]
gi|397629228|gb|EJK69264.1|7.906e-3952.94hypothetical protein THAOC_09485, partial [Thalass... [more]
gi|224000597|ref|XP_002289971.1|3.045e-3851.88predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|517699988|ref|WP_018870196.1|2.233e-3652.67MULTISPECIES: 6-carboxytetrahydropterin synthase [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9549rna9549Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications