rna9546, rna9546 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9546
Unique Name	rna9546
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1947
Alignment location	KK037254.1:140209..142862 -

Link to JBrowse

Properties


Property Name	Value
Product	dead deah box rna
Orig transcript id	gnl\|cribi\|Naga_100108g14.7752.mrna
Orig protein id	gnl\|cribi\|Naga_100108g14.7752
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:140209..142862 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100108g14	gene9268	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21167.1	cds9515	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9546	rna9546-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:140209..142862-
coding sequence from alignment at KK037254.1:140209..142862-

mRNA sequence

>rna9546 ID=rna9546|Name=rna9546|organism=Nannochloropsis gaditana|type=mRNA|length=1947bp
ATGGCCGTCACCCGTCGACAATCGCACAAAAAAGGCTGTAGGGATAGTAA
CGCGGAGAAATTATCGATCAAGGACGTGCAAGAAGGACAGGATGAATCAT
GGGATGACAAGAGGGGAAGAACGACAAGAATACGTGCCAGCAAAGGAGTT
CGCAATCTCGAGGCGTCAGATTCGCACCTGCCCAACCCTTGGGGCAGAGC
ATCATCTAAGGTCCCGTTTACGCCTTTTACTTCTATAAATGAGCCTTCAA
GCGACGCTGGGAAGGAAACGAGGGCTCGGAGGATTGGTCGCGCCGTCTGT
CTCCTTCTTCTAGCCACGATTCTTATAGGAACATACGTGTGGGTCTATAT
CTTGCCGCACGCACGACCGATAGATATGCACAAAACCACTTTGAACCCCT
CGCGATTGACACGCCATTGTCAAGAGCAAGTGGGCCAGCCACGCATTGCG
GAGGTGACCGAGGGCGTCTTCATCGCGACCGGCTACGACCTGGCCAATAC
AATCTTAATCCGAACGAACGAGGGGCACGTGGTGGTGAGTGCAAGCCTGA
CCAAGGACGGCAGCTCTAGCAGTGTGAATGCCCAAAAGGCTCAGCACGGT
CACTATGCGCCGGCATGCCGGCAAGCTGAGGCCCTCCGGGCCTCTCGCCA
GTTCGGAAACCACGTCCCTCTCAGTATTCTACCTTGCTCGGGCTTGGGCC
GCAAAGCCGACATTGAACTTACCTTAAAGACGATGGCCTTTCTCATCCCG
ACCCACACGTTCTCGGGGAACGTCTCGTTCTCCGTGGGCGGCGTGGACTT
CGAACTGGTCGAGGCGCATGGGGAAACGCACGACCACCTCTTCGTCTGGC
TCCCGGGTAAGGATGCCTTGCTCTGCGCAGACCTGTACTACCACTCTTTC
CCCAACCTGTACTCCATCCGAGGGTCGAGCCCCCGGCCTTTGCGCGACTG
GATTCGGAGCCTGGACCGCATGCGCAGGCTCCGGCCCGCTTTCCTTCTCC
CCTCCCACACGCAGCCTGTGGTGGGCAAAGATCTGATCAACCGACAATTG
ACCGACTACCGGGACGGGATTCAATGGGTCTACACGGCCACGGTGCGGGG
CGCGAACGCGGGGAAGACCTTGGAGGCCTTGGCCGAAGGAGTCGCCCTTC
CTCCCCATCTGCGGGCACAGACGGCCCTGGACGAGCTGTACGGACAAATC
GACTGGTCAGTTCGGGCTGCCTATACGAACGAGCTCGGCTGGTTTGATGG
CACGGCGCAGGCTCTTTACCCGTTGCCGGTCGAAGAGCAGGCCCGGAGGG
TGGTGGAGATGGGGGGAGGCCTGGATGCGGTGCTGAAGAAAGCAGAAGCA
GCTCTCAGGGGGGGGGAGGAGATGGGAAAGGAAGCAGAATTTAAGTGGGC
ACTGTATTTGATAAGATTGGTACAGGATGGCTGGGCCGAGGGGCTCAGCG
GGGGGGAGAGGAAGCGGGTGAAAGCCTTGCAGGTCGCAGCATTACGGGGG
CTCGGTGAGAGTGTGATAAATACCAATGGAAGAGGATACCTGCTCCAGAG
AGCCCTTGAATTGGAGGACAAAGCCCCTCTGAGCGATCCTGTGCTTGGTG
CGGCATTCATCGAGGCCATTCCCATTCCTTTGCTCCTGGAGGTGATGGTG
GTCAGGCTGGTTCCAGAACGTTGCATGGACGTGCACATGTGTGCCATCTA
CGTAATCGGCTCCCACCAGTATTTCATCACCATTCGTCGGGGAATTTGTG
AGATCATACTTGGTCGCGAAGCGTTACCTGGGACACCAGAGCCGGTCGGA
GTTTTTAACACAAGCGAAGCGGTGTTTCGTAAAATTGCCCTCAAGCAGAT
CTCCCCTGCCGTGGCGGTGGCATCGGGTCAAGCATCAGTAGAAGGAGACT
TGATGGCCTTCGTGCGCATGGGTTTGATGTTTGAGCGGGGGGCGTGA

protein sequence of rna9546

>rna9546-protein ID=rna9546-protein|Name=rna9546|organism=Nannochloropsis gaditana|type=polypeptide|length=737bp
MARILHPLRTHSPPRTEIKACKNSMGKKDKISLAENAMDTTDAVIVTTSK
KDKSSRKKKNGVAEEEALTDSSAQSASVVEEDSPNKKRKIKGSQEGADGA
GGEKKKKKRAKPEESDAAVKDSAKKTKKCKTQASETADADPNALSNFKIS
QATCTRLEARGIKSLFPIQSMTLQKILDGCDLIGRARTGCGKTLAFALPV
VELIGDEREERGAPPKVLVLAPTRELAKQVADEFEACAPATLRSVCIYGG
APYRPQEEALRRGVQVVVGTPGRILDHIERGTLKLSGLRFLILDEADSML
DMGFKDDIQKVCDAMGQDSHQRRQVLLFSATLPPWVQKVAQQYMRKDKLV
QVDLVQGEDAKASTDVRHVAIPCHWSSMPSTVADCLAVYGGSNKARTIVF
CETKKECNELVVNPVIKTECAALHGDIPQAQRETTLKAFREGRVRVLVAT
DVAARGLDMTVDLVVQNKPPVTASGRTDVETYVHRSGRTGRAGRKGICVT
LFSPKYRFAVKEIEGAVGNKFEWAGAPQPADIVAASALAAMEDVANVDDK
VFPLFQAAAAKLVEEMGAEEALAAALACLTGHTKELRSRSLLSNSDDYVT
CQFQADQPIMSTGYVWTALRNALPQEVTEDIRGMQLTADNTGAVFDVPSK
YMKTSMKRAVEENPFLTVCKTLPEIKQPRGVGGGGFSMGGRGSGFGGRAG
SGFGGRGRGGGFGGRGRGGGFGGRGRGRGGGGGRGRW

mRNA from alignment at KK037254.1:140209..142862-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9546 ID=rna9546|Name=rna9546|organism=Nannochloropsis gaditana|type=mRNA|length=2654bp|location=Sequence derived from alignment at KK037254.1:140209..142862- (Nannochloropsis gaditana)
CATGGCCCGGATTCTCCACCCTTTGCGTACGCACTCCCCGCCCCGCACAG
AAATAAAAGCCTGCAAGAATAGCATGGGCAAGAAGGATAAGATATCTCTG
GCCGAAAACGCCATGGACACCACGGACGCCGTCATTGTCACCACCAGCAA
AAAAGACAAGAGCAGCAGAAAAAAGAAGAACGGTGTGGCTGAAGAGGAGG
CACTGACTGACTCGTCCGCGCAGTCGGCGTCCGTGGTGGAAGAGGACAGC
CCAAACAAGAAACGCAAAATTAAGGGTTCCCAGGAAGGGGCTGACGGGGC
GGGGGGCGAGAAGAAAAAAAAGAAACGTGCCAAGCCGGAGGAAAGTGATG
CTGCAGTCAAGGACAGCGCCAAGAAGACCAAGAAATGTAAGACACAAGCC
TCCGAAACGGCGGATGCGGACCCGAACGCCTTGTCCAATTTCAAGATCTC
TCAGGCAACATGCACGCGGTTGGAGGCACGGGGCATCAAGTCCCTTTTCC
CGATCCAAAGCATGACGTTGCAAAAGATTCTGGATGGCTGCGATCTCATC
GGCCGGGCGCGGACGGGATGCGGGAAGACGCTGGCATTCGCCTTGCCTGT
GGTGGAACTAATCGGAGATGAGCGGGAGGAGCGAGGAGCACCGCCTAAAG
TCCTGGTGTTGGCGCCGACGAGGGAATTGGCCAAGCAGGTGGCGGATGAA
TTCGAAGCATGTGCGCCGGCGACCCTGCGCTCCGTGTGCATCTACGGCGG
GGCTCCGTACCGCCCGCAAGAAGAAGCATTGCGGCGTGGAGTTCAAGTAG
TAGTGGGAACACCAGGACGCATCCTGGATCACATCGAGCGGGGCACGCTC
AAGCTCTCGGGGCTGCGTTTCCTGATCCTGGACGAGGCGGACTCCATGCT
CGACATGGGCTTCAAAGACGACATCCAGAAAGTATGTGACGCCATGGGCC
AAGACAGCCACCAGCGTCGGCAAGTCCTGCTCTTCTCCGCCACCCTTCCA
CCCTGGGTCCAGAAGGTGGCACAGCAGTACATGCGCAAGGACAAGCTGGT
GCAAGTGGACCTGGTGCAGGGAGAGGACGCCAAGGCTTCCACGGACGTGC
GCCACGTGGCCATCCCCTGCCACTGGTCCTCCATGCCCTCCACCGTAGCA
GACTGCCTGGCCGTGTACGGGGGCAGCAACAAGGCTCGGACCATCGTCTT
TTGCGAGACCAAGAAGGAGTGCAACGAGCTGGTAGTGAACCCGGTGATCA
AGACCGAATGCGCGGCTTTGCACGGGGACATCCCCCAGGCCCAGCGCGAG
ACCACCCTCAAGGCCTTTCGGGAGGGGCGGGTCCGCGTCCTGGTGGCCAC
CGACGTGGCTGCCAGGGGCCTGGACATGACCGTGGACCTGGTGGTGCAGA
ACAAACCGCCGGTCACCGCCTCCGGCCGCACGGATGTGGAAACCTACGTG
CACCGGTCGGGACGGACAGGCCGGGCCGGCCGCAAAGGGATCTGTGTCAC
GCTCTTCTCCCCCAAGTACCGGTTCGCCGTCAAGGAGATCGAGGGTGCGG
TGGGGAACAAGTTCGAATGGGCCGGTGCGCCCCAGCCCGCCGACATCGTG
GCGGCCTCGGCCCTGGCCGCCATGGAGGACGTGGCCAACGTGGACGATAA
GGTCTTTCCGCTGTTTCAAGCGGCGGCCGCCAAGCTTGTGGAGGAGATGG
GGGCGGAAGAGGCCTTGGCCGCGGCCTTGGCCTGCCTCACGGGCCACACC
AAGGAGCTCCGATCCCGCTCCCTCCTTTCCAACTCGGACGACTACGTGAC
TTGCCAGTTCCAGGCCGATCAGCCCATTATGAGTACGGGTTACGTATGGA
CCGCGCTGCGCAACGCACTGCCCCAGGAGGTGACGGAGGACATCCGGGGT
ATGCAGCTGACCGCAGACAATACGGGTGCCGTGTTTGACGTGCCGAGCAA
GTACATGAAAACTTCCATGAAAAGGGCTGTGGAGGAGAACCCGTTTTTGA
CGGTCTGCAAGACGCTTCCGGAGATCAAGCAACCGAGGGGGGTTGGGGGA
GGCGGCTTCTCCATGGGAGGGAGGGGAAGCGGGTTCGGTGGGAGGGCTGG
GAGTGGCTTTGGCGGCCGAGGGAGGGGAGGAGGGTTTGGTGGGCGCGGCC
GAGGAGGGGGCTTTGGAGGACGAGGGCGAGGCCGGGGGGGAGGAGGAGGA
CGTGGACGATGGTAGAGAGAAAGGAGTTGGCGTGTCGCTCATGATCGGGA
GAGAGCGAGGGTTGTGCAGATAGTGAAATCTGGATGTTGCAACATCAGAG
CATGTCCACCATAACTGCCTTGCGCGGGGCGCGCGGAGCGCAGAGATTGA
GATTGTCTTAATCGAGTCGGGCATTACTGGATGAGGAAAACAGTAGACGT
GCAGCAAAGTGCGCTAGTGCAAAGATTGGCCATGTCTTGATTGAGTCAGG
TTTGAAGCATGACGGTAGGTCGAATTCTCAAATAAATCTTGGAACTAGGA
AGAAAGTAGACGTACATAGTAGTGCGCTATATGCTACCAGAAGCGCAGTT
TTGGATATACTCATTTTAAGAGATAAAGTAAAGCGTTCAGGGATCGCTGG
AAAGCCCCTTGCAAATCAAAGAGGAAAAAGAACGCAAATCGAAGTGGACT
GTTC

Coding sequence (CDS) from alignment at KK037254.1:140209..142862-

>rna9546 ID=rna9546|Name=rna9546|organism=Nannochloropsis gaditana|type=CDS|length=2214bp|location=Sequence derived from alignment at KK037254.1:140209..142862- (Nannochloropsis gaditana)
ATGGCCCGGATTCTCCACCCTTTGCGTACGCACTCCCCGCCCCGCACAGA
AATAAAAGCCTGCAAGAATAGCATGGGCAAGAAGGATAAGATATCTCTGG
CCGAAAACGCCATGGACACCACGGACGCCGTCATTGTCACCACCAGCAAA
AAAGACAAGAGCAGCAGAAAAAAGAAGAACGGTGTGGCTGAAGAGGAGGC
ACTGACTGACTCGTCCGCGCAGTCGGCGTCCGTGGTGGAAGAGGACAGCC
CAAACAAGAAACGCAAAATTAAGGGTTCCCAGGAAGGGGCTGACGGGGCG
GGGGGCGAGAAGAAAAAAAAGAAACGTGCCAAGCCGGAGGAAAGTGATGC
TGCAGTCAAGGACAGCGCCAAGAAGACCAAGAAATGTAAGACACAAGCCT
CCGAAACGGCGGATGCGGACCCGAACGCCTTGTCCAATTTCAAGATCTCT
CAGGCAACATGCACGCGGTTGGAGGCACGGGGCATCAAGTCCCTTTTCCC
GATCCAAAGCATGACGTTGCAAAAGATTCTGGATGGCTGCGATCTCATCG
GCCGGGCGCGGACGGGATGCGGGAAGACGCTGGCATTCGCCTTGCCTGTG
GTGGAACTAATCGGAGATGAGCGGGAGGAGCGAGGAGCACCGCCTAAAGT
CCTGGTGTTGGCGCCGACGAGGGAATTGGCCAAGCAGGTGGCGGATGAAT
TCGAAGCATGTGCGCCGGCGACCCTGCGCTCCGTGTGCATCTACGGCGGG
GCTCCGTACCGCCCGCAAGAAGAAGCATTGCGGCGTGGAGTTCAAGTAGT
AGTGGGAACACCAGGACGCATCCTGGATCACATCGAGCGGGGCACGCTCA
AGCTCTCGGGGCTGCGTTTCCTGATCCTGGACGAGGCGGACTCCATGCTC
GACATGGGCTTCAAAGACGACATCCAGAAAGTATGTGACGCCATGGGCCA
AGACAGCCACCAGCGTCGGCAAGTCCTGCTCTTCTCCGCCACCCTTCCAC
CCTGGGTCCAGAAGGTGGCACAGCAGTACATGCGCAAGGACAAGCTGGTG
CAAGTGGACCTGGTGCAGGGAGAGGACGCCAAGGCTTCCACGGACGTGCG
CCACGTGGCCATCCCCTGCCACTGGTCCTCCATGCCCTCCACCGTAGCAG
ACTGCCTGGCCGTGTACGGGGGCAGCAACAAGGCTCGGACCATCGTCTTT
TGCGAGACCAAGAAGGAGTGCAACGAGCTGGTAGTGAACCCGGTGATCAA
GACCGAATGCGCGGCTTTGCACGGGGACATCCCCCAGGCCCAGCGCGAGA
CCACCCTCAAGGCCTTTCGGGAGGGGCGGGTCCGCGTCCTGGTGGCCACC
GACGTGGCTGCCAGGGGCCTGGACATGACCGTGGACCTGGTGGTGCAGAA
CAAACCGCCGGTCACCGCCTCCGGCCGCACGGATGTGGAAACCTACGTGC
ACCGGTCGGGACGGACAGGCCGGGCCGGCCGCAAAGGGATCTGTGTCACG
CTCTTCTCCCCCAAGTACCGGTTCGCCGTCAAGGAGATCGAGGGTGCGGT
GGGGAACAAGTTCGAATGGGCCGGTGCGCCCCAGCCCGCCGACATCGTGG
CGGCCTCGGCCCTGGCCGCCATGGAGGACGTGGCCAACGTGGACGATAAG
GTCTTTCCGCTGTTTCAAGCGGCGGCCGCCAAGCTTGTGGAGGAGATGGG
GGCGGAAGAGGCCTTGGCCGCGGCCTTGGCCTGCCTCACGGGCCACACCA
AGGAGCTCCGATCCCGCTCCCTCCTTTCCAACTCGGACGACTACGTGACT
TGCCAGTTCCAGGCCGATCAGCCCATTATGAGTACGGGTTACGTATGGAC
CGCGCTGCGCAACGCACTGCCCCAGGAGGTGACGGAGGACATCCGGGGTA
TGCAGCTGACCGCAGACAATACGGGTGCCGTGTTTGACGTGCCGAGCAAG
TACATGAAAACTTCCATGAAAAGGGCTGTGGAGGAGAACCCGTTTTTGAC
GGTCTGCAAGACGCTTCCGGAGATCAAGCAACCGAGGGGGGTTGGGGGAG
GCGGCTTCTCCATGGGAGGGAGGGGAAGCGGGTTCGGTGGGAGGGCTGGG
AGTGGCTTTGGCGGCCGAGGGAGGGGAGGAGGGTTTGGTGGGCGCGGCCG
AGGAGGGGGCTTTGGAGGACGAGGGCGAGGCCGGGGGGGAGGAGGAGGAC
GTGGACGATGGTAG

Synonyms

Publications