EWM21166.1, cds9507 (CDS) Nannochloropsis gaditana

Overview
NameEWM21166.1
Unique Namecds9507
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:117803..117812 -
Alignment locationKK037254.1:117253..117333 -
Alignment locationKK037254.1:117163..117188 -
Alignment locationKK037254.1:116803..116952 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21166.1
Productribonucleoprotein LSM
Orig transcript idgnl|cribi|Naga_100108g6.7751.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:117803..117812 -
KK037254.1supercontigKK037254.1:117253..117333 -
KK037254.1supercontigKK037254.1:117163..117188 -
KK037254.1supercontigKK037254.1:116803..116952 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
IPR006649Ribonucl_LSM_euk/arc
Homology
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|585101236|gb|EWM21166.1| (ribonucleoprotein LSM [Nannochloropsis gaditana])

HSP 1 Score: 181.03 bits (458), Expect = 7.544e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
Query:    1 MSECALTSFHSSAGSKSNRTYLLLKRTLRNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 88
            MSECALTSFHSSAGSKSNRTYLLLKRTLRNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL
Sbjct:    1 MSECALTSFHSSAGSKSNRTYLLLKRTLRNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 88          
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|301097686|ref|XP_002897937.1| (small nuclear ribonucleoprotein G [Phytophthora infestans T30-4] >gi|695430718|ref|XP_009530508.1| hypothetical protein PHYSODRAFT_514215 [Phytophthora sojae] >gi|262106382|gb|EEY64434.1| small nuclear ribonucleoprotein G [Phytophthora infestans T30-4] >gi|348673260|gb|EGZ13079.1| hypothetical protein PHYSODRAFT_514215 [Phytophthora sojae])

HSP 1 Score: 91.2781 bits (225), Expect = 1.339e-22
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 0
Query:   29 RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88
            R   KLNGNRKV+GVLRGFDQFMN+ LDETV++  A + N IG+VVIRGNS+VQFECLE++
Sbjct:    4 RLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLERI 64          
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|675181627|ref|XP_008899698.1| (hypothetical protein PPTG_07284 [Phytophthora parasitica INRA-310] >gi|566031860|gb|ETI54771.1| hypothetical protein F443_02471 [Phytophthora parasitica P1569] >gi|567969543|gb|ETK94628.1| hypothetical protein L915_02353 [Phytophthora parasitica] >gi|567997944|gb|ETL48023.1| hypothetical protein L916_02314 [Phytophthora parasitica] >gi|568027159|gb|ETM01125.1| hypothetical protein L917_02243 [Phytophthora parasitica] >gi|568057642|gb|ETM54299.1| hypothetical protein L914_02343 [Phytophthora parasitica] >gi|568100384|gb|ETN15083.1| hypothetical protein PPTG_07284 [Phytophthora parasitica INRA-310] >gi|570335591|gb|ETO83539.1| hypothetical protein F444_02454 [Phytophthora parasitica P1976] >gi|570959630|gb|ETP24609.1| hypothetical protein F441_02419 [Phytophthora parasitica CJ01A1] >gi|570995789|gb|ETP52566.1| hypothetical protein F442_02439 [Phytophthora parasitica P10297] >gi|970640667|gb|KUF83103.1| Small nuclear ribonucleoprotein G [Phytophthora nicotianae] >gi|970649002|gb|KUF88388.1| hypothetical protein AM588_10002491 [Phytophthora nicotianae])

HSP 1 Score: 91.2781 bits (225), Expect = 1.967e-22
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 0
Query:   24 LKRTL--RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88
            LKR +  R   KLNGNRKV+GVLRGFDQFMN+ LDET+++  A + N IG+VVIRGNS+VQFECLE++
Sbjct:    9 LKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETIEEVSATESNRIGMVVIRGNSIVQFECLERI 76          
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|953495678|emb|CEG42574.1| (small nuclear ribonucleoprotein g [Plasmopara halstedii])

HSP 1 Score: 89.7373 bits (221), Expect = 6.638e-22
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 0
Query:   24 LKRTL--RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88
            LKR +  R   KLNGNRKV+GVLRGFDQFMN+ LDETV++  A + N IG+VVIRGNS+VQFECL+++
Sbjct:    9 LKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLDRI 76          
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|635365000|emb|CCI46590.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 88.1965 bits (217), Expect = 3.286e-21
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 0
Query:   24 LKRTL--RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88
            LKR +  R   KLNGNRKV+GVLRG+DQFMN+ LDE +++    + N IG+VVIRGNS+VQFECLEKL
Sbjct:    9 LKRYMDKRLSLKLNGNRKVSGVLRGYDQFMNVTLDEAIEEVSTTENNKIGMVVIRGNSIVQFECLEKL 76          
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|673042899|ref|XP_008875410.1| (hypothetical protein H310_10737 [Aphanomyces invadans] >gi|698795168|ref|XP_009830613.1| hypothetical protein H257_06928 [Aphanomyces astaci] >gi|574114189|gb|ETV79677.1| hypothetical protein H257_06928 [Aphanomyces astaci] >gi|574469083|gb|ETV96099.1| hypothetical protein H310_10737 [Aphanomyces invadans])

HSP 1 Score: 84.7297 bits (208), Expect = 7.293e-20
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 0
Query:   32 FKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88
             KLNGNRKV+G+LRGFDQFMNI LD+T+++    + N IG+VVIRGNS+VQFECL+++
Sbjct:   19 IKLNGNRKVSGILRGFDQFMNITLDDTIEEVSQTEANKIGMVVIRGNSIVQFECLDRI 76          
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|384497931|gb|EIE88422.1| (hypothetical protein RO3G_13133 [Rhizopus delemar RA 99-880])

HSP 1 Score: 82.8037 bits (203), Expect = 3.491e-19
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 0
Query:   29 RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAP-DKNDIGLVVIRGNSVVQFECLEKL 88
            R   +LNGNRKVTGVLRG+D FMNIVLDETV++ +P ++N+IG+VVIRGNS+   E LE++
Sbjct:   16 RISLQLNGNRKVTGVLRGYDPFMNIVLDETVEEVSPTERNNIGMVVIRGNSIAIMEALERI 76          
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|1173945515|gb|OQR94131.1| (small nuclear ribonucleoprotein G [Achlya hypogyna])

HSP 1 Score: 82.4185 bits (202), Expect = 5.841e-19
Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 0
Query:   32 FKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88
             KLNGNRKV+GVLRGFDQFMN+ L+E +++    + N +G+VVIRGNS+VQFECL+++
Sbjct:   19 LKLNGNRKVSGVLRGFDQFMNVTLEEAIEEVSTTEANKLGMVVIRGNSIVQFECLDRM 76          
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|727143741|emb|CEG74034.1| (Putative Small nuclear ribonucleoprotein G [Rhizopus microsporus] >gi|1178053381|gb|ORE08889.1| like-Sm ribonucleo protein [Rhizopus microsporus var. microsporus] >gi|1178068221|gb|ORE22615.1| like-Sm ribonucleo protein [Rhizopus microsporus])

HSP 1 Score: 82.4185 bits (202), Expect = 5.905e-19
Identity = 38/61 (62.30%), Postives = 51/61 (83.61%), Query Frame = 0
Query:   29 RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAP-DKNDIGLVVIRGNSVVQFECLEKL 88
            R   +LNGNRKVTG+LRG+D FMNIVLDETV++ +P +K++IG+VVIRGNS+   E LE++
Sbjct:   16 RLSLQLNGNRKVTGILRGYDPFMNIVLDETVEEISPSEKHNIGMVVIRGNSIAIMEALERI 76          
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|1173944824|gb|OQR93514.1| (small nuclear ribonucleoprotein G [Thraustotheca clavata])

HSP 1 Score: 82.0333 bits (201), Expect = 8.568e-19
Identity = 35/58 (60.34%), Postives = 49/58 (84.48%), Query Frame = 0
Query:   32 FKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88
             KLNGNRKV+G+LRGFDQFMN+ L+E +++    + N +G+VVIRGNS+VQFECL+++
Sbjct:   19 LKLNGNRKVSGILRGFDQFMNVTLEEAIEEVSTTEANKLGMVVIRGNSIVQFECLDRM 76          
The following BLAST results are available for this feature:
BLAST of EWM21166.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101236|gb|EWM21166.1|7.544e-58100.00ribonucleoprotein LSM [Nannochloropsis gaditana][more]
gi|301097686|ref|XP_002897937.1|1.339e-2270.49small nuclear ribonucleoprotein G [Phytophthora in... [more]
gi|675181627|ref|XP_008899698.1|1.967e-2266.18hypothetical protein PPTG_07284 [Phytophthora para... [more]
gi|953495678|emb|CEG42574.1|6.638e-2266.18small nuclear ribonucleoprotein g [Plasmopara hals... [more]
gi|635365000|emb|CCI46590.1|3.286e-2164.71unnamed protein product [Albugo candida][more]
gi|673042899|ref|XP_008875410.1|7.293e-2065.52hypothetical protein H310_10737 [Aphanomyces invad... [more]
gi|384497931|gb|EIE88422.1|3.491e-1963.93hypothetical protein RO3G_13133 [Rhizopus delemar ... [more]
gi|1173945515|gb|OQR94131.1|5.841e-1962.07small nuclear ribonucleoprotein G [Achlya hypogyna... [more]
gi|727143741|emb|CEG74034.1|5.905e-1962.30Putative Small nuclear ribonucleoprotein G [Rhizop... [more]
gi|1173944824|gb|OQR93514.1|8.568e-1960.34small nuclear ribonucleoprotein G [Thraustotheca c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9538rna9538Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications