rna9538, rna9538 (mRNA) Nannochloropsis gaditana

Overview
Namerna9538
Unique Namerna9538
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length258
Alignment locationKK037254.1:116803..117812 -

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Properties
Property NameValue
Productribonucleoprotein LSM
Orig transcript idgnl|cribi|Naga_100108g6.7751.mrna
Orig protein idgnl|cribi|Naga_100108g6.7751
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:116803..117812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100108g6gene9260Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9538rna9538-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21166.1cds9507Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9538 ID=rna9538|Name=rna9538|organism=Nannochloropsis gaditana|type=mRNA|length=258bp
ATGGAGTACTGCATCGCAACGGTCGCAAAAGGGACATCTATGTGTGAGGA
GCACATTGCAAGGAGGACGGGACGGCCTTGGCAGGGGATTTTCTCCCCCC
CCATCAGAATACTGTTGACTCCATCGAGCCCGGGAGGGATATGGTGGCAT
AGAGACGCAGTCGCCGAGCTATATGAGTTTTATGGAATACTCGCAAGTAT
GAAGCTGAAACTGCATCTTTGGCTGCAGCATATGCATGGAGGACGACGCG
AATCATAG
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protein sequence of rna9538

>rna9538-protein ID=rna9538-protein|Name=rna9538|organism=Nannochloropsis gaditana|type=polypeptide|length=88bp
MSECALTSFHSSAGSKSNRTYLLLKRTLRNPFKLNGNRKVTGVLRGFDQF
MNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL
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mRNA from alignment at KK037254.1:116803..117812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9538 ID=rna9538|Name=rna9538|organism=Nannochloropsis gaditana|type=mRNA|length=1010bp|location=Sequence derived from alignment at KK037254.1:116803..117812- (Nannochloropsis gaditana)
ATGTCAGAATGTGCGAATTTCGTCCCATCGCGTTTGGTCTCTTTCTACCA
TGCTTTTTTGGTCATATTTTACGGTGGCTCCAACGAGTGGTGGGCGTGCA
CCGCGCCCAATGACCGCCATTGCGTGTCAGGAAAGCGAGTCCGAACGGGC
GGCTGCGACGAGTCTCCGCTTCTGCAAGACCGAATGGGGATCATCCTCCT
CCCCTTGCAAAGCGTTCTCGAACCGAATGGACACGGGAAATGCAAGCATG
ACCTACCAACATTGCATTGGACCTAGACATCGTGTGAATACGGGCTGGGA
AGGCAGTCGATGCTGTGTTGATCCCAAATCGAAATGATTCGTTGCTGGAA
GCGCCTGTGTCGGGGCTTCCGATGGGAGGCGGCAGATTCCATGCTTCAGA
TTCCTCCTGTCAATCCTCATCTCTTTTGGCCATTGCCTCTCATTTGCCCG
TCTTCCTCTCCTTATTTCTCTGCCATTAGGTGCCTTAACTTCCTTCCATT
CTAGCGCAGGAAGCAAAAGCAACCGGACGTATCTGCTCCTAAAGAGAACC
CTCCGGAACCGTAAGCTAGAAAATGAGCAAAACGGGCGGCCCGGACCTTA
AAAAATACTTGGATAAGAAGCTAGCTTTCAAGTTAAATGGAAATCGCAAG
GTACGAGAAAATGGACGGGGACAGGGCTGGCTTTTTGGGGGGCGACAGAA
AATATGGAATGGAATGCCTAGGCCATGCGTTCGGGTGGACCATGATTCGG
GGCTCGATTGGTCGCCACTGATGCACTTTGAGTTGTAAATGACATATGTT
ACTGAGGAAGTAAGCTAACGGTCACGAGCTGTTACCGGCCTTTTTCTTCC
TCTTGGGCAGGTGACAGGCGTGCTGCGTGGCTTCGATCAGTTCATGAATA
TTGTGCTAGATGAGACGGTGGACGACGGGGCGCCAGATAAGAATGATATC
GGGCTTGTGGTGATTCGAGGGAACTCAGTGGTGCAATTCGAGTGTTTGGA
GAAGCTATAG
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Coding sequence (CDS) from alignment at KK037254.1:116803..117812-

>rna9538 ID=rna9538|Name=rna9538|organism=Nannochloropsis gaditana|type=CDS|length=1068bp|location=Sequence derived from alignment at KK037254.1:116803..117812- (Nannochloropsis gaditana)
GTGACAGGCGTGCTGCGTGGCTTCGATCAGTTCATGAATATTGTGCTAGA
TGAGACGGTGGACGACGGGGCGCCAGATAAGAATGATATCGGGCTTGTGG
TGATTCGAGGGAACTCAGTGGTGCAATTCGAGTGTTTGGAGAAGCTATAG
CTTTCAAGTTAAATGGAAATCGCAAGGTGCCTTAACTTCCTTCCATTCTA
GCGCAGGAAGCAAAAGCAACCGGACGTATCTGCTCCTAAAGAGAACCCTC
CGGAACCATGTCAGAATGTGACAGGCGTGCTGCGTGGCTTCGATCAGTTC
ATGAATATTGTGCTAGATGAGACGGTGGACGACGGGGCGCCAGATAAGAA
TGATATCGGGCTTGTGGTGATTCGAGGGAACTCAGTGGTGCAATTCGAGT
GTTTGGAGAAGCTATAGCTTTCAAGTTAAATGGAAATCGCAAGGTGCCTT
AACTTCCTTCCATTCTAGCGCAGGAAGCAAAAGCAACCGGACGTATCTGC
TCCTAAAGAGAACCCTCCGGAACCATGTCAGAATGTGACAGGCGTGCTGC
GTGGCTTCGATCAGTTCATGAATATTGTGCTAGATGAGACGGTGGACGAC
GGGGCGCCAGATAAGAATGATATCGGGCTTGTGGTGATTCGAGGGAACTC
AGTGGTGCAATTCGAGTGTTTGGAGAAGCTATAGCTTTCAAGTTAAATGG
AAATCGCAAGGTGCCTTAACTTCCTTCCATTCTAGCGCAGGAAGCAAAAG
CAACCGGACGTATCTGCTCCTAAAGAGAACCCTCCGGAACCATGTCAGAA
TGTGACAGGCGTGCTGCGTGGCTTCGATCAGTTCATGAATATTGTGCTAG
ATGAGACGGTGGACGACGGGGCGCCAGATAAGAATGATATCGGGCTTGTG
GTGATTCGAGGGAACTCAGTGGTGCAATTCGAGTGTTTGGAGAAGCTATA
GCTTTCAAGTTAAATGGAAATCGCAAGGTGCCTTAACTTCCTTCCATTCT
AGCGCAGGAAGCAAAAGCAACCGGACGTATCTGCTCCTAAAGAGAACCCT
CCGGAACCATGTCAGAAT
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Synonyms
Publications