EWM21166.1, cds9507 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|585101236|gb|EWM21166.1| (ribonucleoprotein LSM [Nannochloropsis gaditana]) HSP 1 Score: 181.03 bits (458), Expect = 7.544e-58 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 Query: 1 MSECALTSFHSSAGSKSNRTYLLLKRTLRNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 88 MSECALTSFHSSAGSKSNRTYLLLKRTLRNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL Sbjct: 1 MSECALTSFHSSAGSKSNRTYLLLKRTLRNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 88
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|301097686|ref|XP_002897937.1| (small nuclear ribonucleoprotein G [Phytophthora infestans T30-4] >gi|695430718|ref|XP_009530508.1| hypothetical protein PHYSODRAFT_514215 [Phytophthora sojae] >gi|262106382|gb|EEY64434.1| small nuclear ribonucleoprotein G [Phytophthora infestans T30-4] >gi|348673260|gb|EGZ13079.1| hypothetical protein PHYSODRAFT_514215 [Phytophthora sojae]) HSP 1 Score: 91.2781 bits (225), Expect = 1.339e-22 Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 0 Query: 29 RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88 R KLNGNRKV+GVLRGFDQFMN+ LDETV++ A + N IG+VVIRGNS+VQFECLE++ Sbjct: 4 RLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLERI 64
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|675181627|ref|XP_008899698.1| (hypothetical protein PPTG_07284 [Phytophthora parasitica INRA-310] >gi|566031860|gb|ETI54771.1| hypothetical protein F443_02471 [Phytophthora parasitica P1569] >gi|567969543|gb|ETK94628.1| hypothetical protein L915_02353 [Phytophthora parasitica] >gi|567997944|gb|ETL48023.1| hypothetical protein L916_02314 [Phytophthora parasitica] >gi|568027159|gb|ETM01125.1| hypothetical protein L917_02243 [Phytophthora parasitica] >gi|568057642|gb|ETM54299.1| hypothetical protein L914_02343 [Phytophthora parasitica] >gi|568100384|gb|ETN15083.1| hypothetical protein PPTG_07284 [Phytophthora parasitica INRA-310] >gi|570335591|gb|ETO83539.1| hypothetical protein F444_02454 [Phytophthora parasitica P1976] >gi|570959630|gb|ETP24609.1| hypothetical protein F441_02419 [Phytophthora parasitica CJ01A1] >gi|570995789|gb|ETP52566.1| hypothetical protein F442_02439 [Phytophthora parasitica P10297] >gi|970640667|gb|KUF83103.1| Small nuclear ribonucleoprotein G [Phytophthora nicotianae] >gi|970649002|gb|KUF88388.1| hypothetical protein AM588_10002491 [Phytophthora nicotianae]) HSP 1 Score: 91.2781 bits (225), Expect = 1.967e-22 Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 0 Query: 24 LKRTL--RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88 LKR + R KLNGNRKV+GVLRGFDQFMN+ LDET+++ A + N IG+VVIRGNS+VQFECLE++ Sbjct: 9 LKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETIEEVSATESNRIGMVVIRGNSIVQFECLERI 76
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|953495678|emb|CEG42574.1| (small nuclear ribonucleoprotein g [Plasmopara halstedii]) HSP 1 Score: 89.7373 bits (221), Expect = 6.638e-22 Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 0 Query: 24 LKRTL--RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88 LKR + R KLNGNRKV+GVLRGFDQFMN+ LDETV++ A + N IG+VVIRGNS+VQFECL+++ Sbjct: 9 LKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLDRI 76
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|635365000|emb|CCI46590.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 88.1965 bits (217), Expect = 3.286e-21 Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 0 Query: 24 LKRTL--RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88 LKR + R KLNGNRKV+GVLRG+DQFMN+ LDE +++ + N IG+VVIRGNS+VQFECLEKL Sbjct: 9 LKRYMDKRLSLKLNGNRKVSGVLRGYDQFMNVTLDEAIEEVSTTENNKIGMVVIRGNSIVQFECLEKL 76
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|673042899|ref|XP_008875410.1| (hypothetical protein H310_10737 [Aphanomyces invadans] >gi|698795168|ref|XP_009830613.1| hypothetical protein H257_06928 [Aphanomyces astaci] >gi|574114189|gb|ETV79677.1| hypothetical protein H257_06928 [Aphanomyces astaci] >gi|574469083|gb|ETV96099.1| hypothetical protein H310_10737 [Aphanomyces invadans]) HSP 1 Score: 84.7297 bits (208), Expect = 7.293e-20 Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 0 Query: 32 FKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88 KLNGNRKV+G+LRGFDQFMNI LD+T+++ + N IG+VVIRGNS+VQFECL+++ Sbjct: 19 IKLNGNRKVSGILRGFDQFMNITLDDTIEEVSQTEANKIGMVVIRGNSIVQFECLDRI 76
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|384497931|gb|EIE88422.1| (hypothetical protein RO3G_13133 [Rhizopus delemar RA 99-880]) HSP 1 Score: 82.8037 bits (203), Expect = 3.491e-19 Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 0 Query: 29 RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAP-DKNDIGLVVIRGNSVVQFECLEKL 88 R +LNGNRKVTGVLRG+D FMNIVLDETV++ +P ++N+IG+VVIRGNS+ E LE++ Sbjct: 16 RISLQLNGNRKVTGVLRGYDPFMNIVLDETVEEVSPTERNNIGMVVIRGNSIAIMEALERI 76
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|1173945515|gb|OQR94131.1| (small nuclear ribonucleoprotein G [Achlya hypogyna]) HSP 1 Score: 82.4185 bits (202), Expect = 5.841e-19 Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 0 Query: 32 FKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88 KLNGNRKV+GVLRGFDQFMN+ L+E +++ + N +G+VVIRGNS+VQFECL+++ Sbjct: 19 LKLNGNRKVSGVLRGFDQFMNVTLEEAIEEVSTTEANKLGMVVIRGNSIVQFECLDRM 76
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|727143741|emb|CEG74034.1| (Putative Small nuclear ribonucleoprotein G [Rhizopus microsporus] >gi|1178053381|gb|ORE08889.1| like-Sm ribonucleo protein [Rhizopus microsporus var. microsporus] >gi|1178068221|gb|ORE22615.1| like-Sm ribonucleo protein [Rhizopus microsporus]) HSP 1 Score: 82.4185 bits (202), Expect = 5.905e-19 Identity = 38/61 (62.30%), Postives = 51/61 (83.61%), Query Frame = 0 Query: 29 RNPFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAP-DKNDIGLVVIRGNSVVQFECLEKL 88 R +LNGNRKVTG+LRG+D FMNIVLDETV++ +P +K++IG+VVIRGNS+ E LE++ Sbjct: 16 RLSLQLNGNRKVTGILRGYDPFMNIVLDETVEEISPSEKHNIGMVVIRGNSIAIMEALERI 76
BLAST of EWM21166.1 vs. NCBI_GenBank
Match: gi|1173944824|gb|OQR93514.1| (small nuclear ribonucleoprotein G [Thraustotheca clavata]) HSP 1 Score: 82.0333 bits (201), Expect = 8.568e-19 Identity = 35/58 (60.34%), Postives = 49/58 (84.48%), Query Frame = 0 Query: 32 FKLNGNRKVTGVLRGFDQFMNIVLDETVDD-GAPDKNDIGLVVIRGNSVVQFECLEKL 88 KLNGNRKV+G+LRGFDQFMN+ L+E +++ + N +G+VVIRGNS+VQFECL+++ Sbjct: 19 LKLNGNRKVSGILRGFDQFMNVTLEEAIEEVSTTEANKLGMVVIRGNSIVQFECLDRM 76 The following BLAST results are available for this feature:
BLAST of EWM21166.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|