rna9485, rna9485 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9485
Unique Name	rna9485
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	720
Alignment location	KK037253.1:398767..400400 +

Link to JBrowse

Properties


Property Name	Value
Product	RNA-binding S4 domain protein
Orig transcript id	gnl\|cribi\|Naga_100521g1.3641.mrna
Orig protein id	gnl\|cribi\|Naga_100521g1.3641
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:398767..400400 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100521g1	gene9206	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9485	rna9485-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21221.1	cds9454	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:398767..400400+
coding sequence from alignment at KK037253.1:398767..400400+

mRNA sequence

>rna9485 ID=rna9485|Name=rna9485|organism=Nannochloropsis gaditana|type=mRNA|length=720bp
ATGGTGTCAACACGTCGGCAATCTGCGAAGCTGGAGTCCCGCAAGCAACG
AGAAGCCACCTACAGGAATGCCGCCTTGGGCTCCATAGCGGCCGTGATAT
TGGGCCTGCTTATATTCTTCCTACTGCCCCAGCGCGTGACGGGGTGGAGG
TTCTCCATCCCCGGACACTCGCGTCGCTTGCCTCAGACTTCGTGGCGGAG
CCCTCAAAGGCGCCAGTTTCCCCGCTCACCCCAGCCTCGGACCACGCCTC
ACCCCCCCGCCGTCCCTCCCTCACTCCCTCGTCGCTCCACGGCCCATGCG
CTCAGCCCTACGAAGGCCCTTACCTCCCTCTTTCCCAGCAGCATCATTTT
ATCTGGCCTCTTTCTCTTCCTTTCTTATGTCATTCCCCCGGACGTGGCCC
TGGCAGCTCCTCTTCCCGGCTCCCTCTCTCCCACGCTCCTGGTCCTCTCA
CAGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGACAG
CGTCCCGTCGAAGACTGCCCTGGAGGATTTGGAGAAGGAGCTGGGGAAGG
CAGCCTTCTTCGGGAGTGAGGAGGTGACGGGAGAGTCCGGGAAGGAGGAG
CTAGCGGCGGGGCGAGAGCCTCTCTCCCCCCCGTCCTCTCCCTCCTCGTC
GACCGACCGCCTGAACGCGCTTCTGAACAGCAAACGCAAAAGTGTGGAGC
CCCGGACTCACGGGCTTTGA

protein sequence of rna9485

>rna9485-protein ID=rna9485-protein|Name=rna9485|organism=Nannochloropsis gaditana|type=polypeptide|length=253bp
MIYLAILFLLLDVGAAWRYRTDVPSFSSLPFTTRHIESIPVRKADISFLP
PWALFSSVQGGGMQAKGEKGGRNDQETPAVMDVEEGEEIAEFHVTAKEGM
LPLDILLVRRFPELSRRACRRLLQEGRVHVNGRVTTRLSKLGTGKNLLRV
LLPRGGMASSIGLGFQLLPEKMNLTFVPALFPLPPSFPPSLFPSLPPSSP
SLLPLPPSFPPPLLPLPSFSLFLPSFYLLSFFSSLLPVPFSLAALPFRLS
PCL

mRNA from alignment at KK037253.1:398767..400400+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9485 ID=rna9485|Name=rna9485|organism=Nannochloropsis gaditana|type=mRNA|length=1634bp|location=Sequence derived from alignment at KK037253.1:398767..400400+ (Nannochloropsis gaditana)
AGTACGGAGGAACTTCAACTTCCATGTTCGCCGTCTCCCACAGCGCTTTG
CATAGATTAAGCCCCACGGGCAGCGAGGTTTAAACCGGCGTAATCGGGGA
GATGTATGAGTAATTATGGAGCTCCTTGTTCATGATTACGTCTAATCACT
TTCCATCTTTTTCAAGGACATCCCGTAGGGAGCTATCCCCCTGGGAACGA
GCGGTTGAAATCATTGGCCAGAGTACTAGAGCCGCTTTATTCCCCTCTTG
GATACAGCATTTGGACACTCTGTCCATATGATCTACCTAGCCATTctgtt
tcttctccttgatgTCGGTGCCGCCTGGAGATACCGAACGGAcgtgccct
ccttctcgtccctccccttcacgaCGAGGCACATCGAAAGTATCCCTGTT
AGGAAAGCTgacatctccttcctcccaccctggGCCCTGTTCTCCAGCGT
ACAAGGTGGAGGAATGCaagcgaagggggaaaaaggcgggagAAATGACC
AAGAAACCCCGGCGGTGATGGacgtagaggagggagaggagattGCTGAA
TTCCACGTCACTGCCAAGGAGGGTAGGTGGGTGtccgggtgggagggcgg
acgaCACGAAGCGCAGGGTAGGATGTTCAGTTGTCGTgcaaggggggaag
cggggaggaagggcgtggtAATAGCGCGGACCCTGGCAGACGCGGGGCTG
CGTGCCTCccattctccctcctcccctctctctccccctctcagGCATGC
TCCCTCTGGATATCCTGCTTGTTCGTCGATTCCCTGAGCTCTCTCGGCGA
GCCTGCCGACGACTCttgcaggagggaagggtccACGTCAATGGGCGAGG
tgatcttccctccctctttcccttcctccctccgtccctccctgtctctt
ttcctcccttcctccatccttcccttcttctcttctctccgccccttcct
ttctgctCCCTTCCACGATCTCATTATCCTTTGTCATCTGGCCTATGGCC
GTGTCCGGaatccccgtcctcgctgtTCTCTCATGATagtcatccctccc
tccgccccgccctcccgcccgacctgcctccttccctccctcttccctcc
ccctccccccagtcACGACCCGCTTGAGCAAACTCGGGACCGGCAAGAAT
CTGCTCAGGGTGCTCCTCCCCAGAGGCGGGATGGCTTCATCCATCGGCCT
GGGCTTCCAACTCCTTCCCGAGAAAATGAATCTCACGTTCGttcccgccc
tttttcccctccctccctcgttcccgccctccctctttccctccctccct
ccttcctctccctccctccttccccttcccccctccttccctccccccct
tcttcccctaccttcgttctctcttttcctcccctctttctatcttctct
ctttcttctcctccctcctccctgtccctttttccctcgctGCACTCCCA
TTCCGCCTTTCGCCCTGTCTTTAGgaacctctccctccctccctttctcc
ctccctcccatcctctctccttgcttaccttccttcctccagggTGCTTT
ATGAGGACGAGCATTTCATCGCCCTCGGTAAAGGCCCGGACGTTGTGGTA
CAGCCCTGCGAGAGTGCGCCCACCggtaacctcc

Coding sequence (CDS) from alignment at KK037253.1:398767..400400+

>rna9485 ID=rna9485|Name=rna9485|organism=Nannochloropsis gaditana|type=CDS|length=2286bp|location=Sequence derived from alignment at KK037253.1:398767..400400+ (Nannochloropsis gaditana)
ATGATCTACCTAGCCATTctgtttcttctccttgatgTCGGTGCCGCCTG
GAGATACCGAACGGAcgtgccctccttctcgtccctccccttcacgaCGA
GGCACATCGAAAGTATCCCTGTTAGGAAAGCTgacatctccttcctccca
ccctggGCCCTGTTCTCCAGCGTACAAGGTGGAGGAATGCaagcgaaggg
ggaaaaaggcgggagAAATGACCAAGAAACCCCGGCGGTGATGGacgtag
aggagggagaggagattGCTGAATTCCACGTCACTGCCAAGGAGGGCATG
CTCCCTCTGGATATCCTGCTTGTTCGTCGATTCCCTGAGCTCTCTCGGCG
AGCCTGCCGACGACTCttgcaggagggaagggtccACGTCAATGGGCGAG
tcACGACCCGCTTGAGCAAACTCGGGACCGGCAAGAATCTGCTCAGGGTG
CTCCTCCCCAGAGGCGGGATGGCTTCATCCATCGGCCTGGGCTTCCAACT
CCTTCCCGAGAAAATGAATCTCACGTTCGttcccgccctttttcccctcc
ctccctcgttcccgccctccctctttccctccctccctccttcctctccc
tccctccttccccttcccccctccttccctcccccccttcttcccctacc
ttcgttctctcttttcctcccctctttctatcttctctctttcttctcct
ccctcctccctgtccctttttccctcgctGCACTCCCATTCCGCCTTTCG
CCCTGTCTTTAGATGATCTACCTAGCCATTctgtttcttctccttgatgT
CGGTGCCGCCTGGAGATACCGAACGGAcgtgccctccttctcgtccctcc
ccttcacgaCGAGGCACATCGAAAGTATCCCTGTTAGGAAAGCTgacatc
tccttcctcccaccctggGCCCTGTTCTCCAGCGTACAAGGTGGAGGAAT
GCaagcgaagggggaaaaaggcgggagAAATGACCAAGAAACCCCGGCGG
TGATGGacgtagaggagggagaggagattGCTGAATTCCACGTCACTGCC
AAGGAGGGCATGCTCCCTCTGGATATCCTGCTTGTTCGTCGATTCCCTGA
GCTCTCTCGGCGAGCCTGCCGACGACTCttgcaggagggaagggtccACG
TCAATGGGCGAGtcACGACCCGCTTGAGCAAACTCGGGACCGGCAAGAAT
CTGCTCAGGGTGCTCCTCCCCAGAGGCGGGATGGCTTCATCCATCGGCCT
GGGCTTCCAACTCCTTCCCGAGAAAATGAATCTCACGTTCGttcccgccc
tttttcccctccctccctcgttcccgccctccctctttccctccctccct
ccttcctctccctccctccttccccttcccccctccttccctccccccct
tcttcccctaccttcgttctctcttttcctcccctctttctatcttctct
ctttcttctcctccctcctccctgtccctttttccctcgctGCACTCCCA
TTCCGCCTTTCGCCCTGTCTTTAGATGATCTACCTAGCCATTctgtttct
tctccttgatgTCGGTGCCGCCTGGAGATACCGAACGGAcgtgccctcct
tctcgtccctccccttcacgaCGAGGCACATCGAAAGTATCCCTGTTAGG
AAAGCTgacatctccttcctcccaccctggGCCCTGTTCTCCAGCGTACA
AGGTGGAGGAATGCaagcgaagggggaaaaaggcgggagAAATGACCAAG
AAACCCCGGCGGTGATGGacgtagaggagggagaggagattGCTGAATTC
CACGTCACTGCCAAGGAGGGCATGCTCCCTCTGGATATCCTGCTTGTTCG
TCGATTCCCTGAGCTCTCTCGGCGAGCCTGCCGACGACTCttgcaggagg
gaagggtccACGTCAATGGGCGAGtcACGACCCGCTTGAGCAAACTCGGG
ACCGGCAAGAATCTGCTCAGGGTGCTCCTCCCCAGAGGCGGGATGGCTTC
ATCCATCGGCCTGGGCTTCCAACTCCTTCCCGAGAAAATGAATCTCACGT
TCGttcccgccctttttcccctccctccctcgttcccgccctccctcttt
ccctccctccctccttcctctccctccctccttccccttcccccctcctt
ccctcccccccttcttcccctaccttcgttctctcttttcctcccctctt
tctatcttctctctttcttctcctccctcctccctgtccctttttccctc
gctGCACTCCCATTCCGCCTTTCGCCCTGTCTTTAG

Synonyms

Publications