EWM21221.1, cds9454 (CDS) Nannochloropsis gaditana

Overview
NameEWM21221.1
Unique Namecds9454
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:399044..399338 +
Alignment locationKK037253.1:399511..399615 +
Alignment locationKK037253.1:399879..400240 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21221.1
ProductRNA-binding S4 domain protein
Orig transcript idgnl|cribi|Naga_100521g1.3641.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:399044..399338 +
KK037253.1supercontigKK037253.1:399511..399615 +
KK037253.1supercontigKK037253.1:399879..400240 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
Homology
[Close]
BLAST of EWM21221.1 vs. NCBI_GenBank
Match: gi|585101331|gb|EWM21221.1| (RNA-binding S4 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 490.345 bits (1261), Expect = 7.628e-175
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0 
Query:    1 MIYLAILFLLLDVGAAWRYRTDVPSFSSLPFTTRHIESIPVRKADISFLPPWALFSSVQGGGMQAKGEKGGRNDQETPAVMDVEEGEEIAEFHVTAKEGMLPLDILLVRRFPELSRRACRRLLQEGRVHVNGRVTTRLSKLGTGKNLLRVLLPRGGMASSIGLGFQLLPEKMNLTFVPALFPLPPSFPPSLFPSLPPSSPSLLPLPPSFPPPLLPLPSFSLFLPSFYLLSFFSSLLPVPFSLAALPFRLSPCL 253
            MIYLAILFLLLDVGAAWRYRTDVPSFSSLPFTTRHIESIPVRKADISFLPPWALFSSVQGGGMQAKGEKGGRNDQETPAVMDVEEGEEIAEFHVTAKEGMLPLDILLVRRFPELSRRACRRLLQEGRVHVNGRVTTRLSKLGTGKNLLRVLLPRGGMASSIGLGFQLLPEKMNLTFVPALFPLPPSFPPSLFPSLPPSSPSLLPLPPSFPPPLLPLPSFSLFLPSFYLLSFFSSLLPVPFSLAALPFRLSPCL
Sbjct:    1 MIYLAILFLLLDVGAAWRYRTDVPSFSSLPFTTRHIESIPVRKADISFLPPWALFSSVQGGGMQAKGEKGGRNDQETPAVMDVEEGEEIAEFHVTAKEGMLPLDILLVRRFPELSRRACRRLLQEGRVHVNGRVTTRLSKLGTGKNLLRVLLPRGGMASSIGLGFQLLPEKMNLTFVPALFPLPPSFPPSLFPSLPPSSPSLLPLPPSFPPPLLPLPSFSLFLPSFYLLSFFSSLLPVPFSLAALPFRLSPCL 253
The following BLAST results are available for this feature:
BLAST of EWM21221.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585101331|gb|EWM21221.1|7.628e-175100.00RNA-binding S4 domain protein [Nannochloropsis gad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9485rna9485Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications