rna9479, rna9479 (mRNA) Nannochloropsis gaditana

Overview
Namerna9479
Unique Namerna9479
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length621
Alignment locationKK037253.1:386676..387925 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100507g1.10253.mrna
Orig protein idgnl|cribi|Naga_100507g1.10253
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:386676..387925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100507g1gene9200Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9479rna9479-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21226.1cds9448Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9479 ID=rna9479|Name=rna9479|organism=Nannochloropsis gaditana|type=mRNA|length=621bp
ATGCCCGCATGTAGCTTTCCTGTCCTGCTGGTCATCTTTTTCAACCTCCT
CTTCCCCCCGGTGACTGTCGCCTTCGTCCTCTCGTCCCCCTTAGCAACGC
CAAACCAGCGATCTGTGGTTTGTTTACGCAGTACAATACAGAATGTAATC
GGAGAAATACTACCCACCCTGGATCCCACCTTGAAAGTTACAAGAGTATC
GGTTGAAGACCCCTCCGCCGAGCACCCTGTCTGTGGCTATTTGGTGGAAG
CCGAGATATATGGGCCCGACGTGAAGAAAACGTACAACCAGGCATTGAAA
GCCGGGACCCTGAACGCCAATTTCCCGGGCTTTCGGAAGGGCGTCATGCC
CCCCCATGCGTTGGTGGGCGTGAAACTTAGCGCTGTCACGGCTTCCATCA
TGGACGCCTGCCGAACGGCCATGGAGATGCACGGCTTGGAGAACTTTCCC
GCCAATGAACGCAAGCTCAGGATGAAGGTGCCCCAAAGCACAGAGGAGTT
GGCAAAGCAATACGAGATCGGCACTGATTTGACTTTCGCTTGTGAAATAG
ATGCTATCGGTGTCCCGGGCAAAGCCACATCGCTTGATACGACAGCAGAG
GGTCAAGAGACTGATACTTAA
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protein sequence of rna9479

>rna9479-protein ID=rna9479-protein|Name=rna9479|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWP
PQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTL
LEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCG
W
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mRNA from alignment at KK037253.1:386676..387925+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9479 ID=rna9479|Name=rna9479|organism=Nannochloropsis gaditana|type=mRNA|length=1250bp|location=Sequence derived from alignment at KK037253.1:386676..387925+ (Nannochloropsis gaditana)
GAGGCTTTGAAGAACACACATGGGCGACGGTGACCAGATGAGAACCCCGG
AAGATGACATTGGTGTCGGTTCGGAGGcttggggaagaagggaaagccaa
gcctgggagggaggaggtcgggaagGCCATAGCAGCCGCCCACCCCAAGA
AGTCACATGCGACTGGCCACCACAGGGGTACGAGTCCGATGTCATTCGAG
TAataaaagaagagggaatggatggaggagcaggacgcgATGGTGAGAAA
GGAGCCATGgttgtggaggaaaaagtggtGGTGGAATACGAGAGGAGGCG
GTTGACCTTTCGAACTCTCTTGGTAAGAAAATTTGGGAGGATAAGAGGGT
CGAacagagggtgaggaggagtgcTAGACTTCTAGAGGTCTAGTGTAGTA
AAAATCagtgaaggaaagggacatGACATTGACAAAGGCGCATTTTATGA
TGCGTGGAGGCCTTAAAATGAAATCGAGAGGGCGAGTTCATGGTTAGGAG
GGGCTCACGGACGCGCCACATGtacacaggaggaggacgaattGGCACCC
TTGTTTGATGGCGCGTATTGGCCTGGTGAGTCTCCCTGAAAAAGCCggtc
cctttttttccctcgcaAAAACCACCCGTATGTGAGTGTTTTCCGGCCAT
GTAGATTTTATCATCGTCGTCATTTATcagccccctttctttcttaaATA
GGGACGATGGTCTGGCCTGTCTCCTTGTGGACCGCCGAATACTTGCACCG
CACCTACCGGAGGGAGCTGAAGGGTGCCAGGGTCGTGGAGCTCGGCTGTG
ggtggtagggagggagggagggagggcgggaagaagggagggaaagaagc
acGCAGACAGGTCCCACGAAGGCGGTGTCTTTCAGCCAAACCCTCAGACC
CGTTCATCCCCGtcgatttcccccccccctcgcccccctttccccccctc
cctgtgcaGCGGGGTGCCCGGCATGCTCTGCCACCTGATGGGAGCGGCCT
CTGTGGCCCTGACGGAGCAGGCGGAGCTCATGCGGATTATACGCGCGAAT
ATCAAGGAAAATTTTGGTGTGGAAATGGTCGGCGAGGGATtgctggaggg
agcggaggaggtaggagaggcgcccgcctcctgcctcccccagccttatc
cctcttcctccgccgatacctcccctccccctgccgcctcctcctccctg
ttcGCGGCCCCCTTGGGGTGGTCGAGAGAAGCGGCGCGAGACTTCCTTgg
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Coding sequence (CDS) from alignment at KK037253.1:386676..387925+

>rna9479 ID=rna9479|Name=rna9479|organism=Nannochloropsis gaditana|type=CDS|length=1368bp|location=Sequence derived from alignment at KK037253.1:386676..387925+ (Nannochloropsis gaditana)
ATGGGCGACGGTGACCAGATGAGAACCCCGGAAGATGACATTGGTGTCGG
TTCGGAGGcttggggaagaagggaaagccaagcctgggagggaggaggtc
gggaagGCCATAGCAGCCGCCCACCCCAAGAAGTCACATGCGACTGGCCA
CCACAGGGGTACGAGTCCGATGTCATTCGAGTAataaaagaagagggaat
ggatggaggagcaggacgcgATGGTGAGAAAGGAGCCATGgttgtggagg
aaaaagtggtGGTGGAATACGAGAGGAGGCGGTTGACCTTTCGAACTCTC
TTGgaggaggacgaattGGCACCCTTGTTTGATGGCGCGTATTGGCCTGG
GACGATGGTCTGGCCTGTCTCCTTGTGGACCGCCGAATACTTGCACCGCA
CCTACCGGAGGGAGCTGAAGGGTGCCAGGGTCGTGGAGCTCGGCTGTGgg
tggtagATGGGCGACGGTGACCAGATGAGAACCCCGGAAGATGACATTGG
TGTCGGTTCGGAGGcttggggaagaagggaaagccaagcctgggagggag
gaggtcgggaagGCCATAGCAGCCGCCCACCCCAAGAAGTCACATGCGAC
TGGCCACCACAGGGGTACGAGTCCGATGTCATTCGAGTAataaaagaaga
gggaatggatggaggagcaggacgcgATGGTGAGAAAGGAGCCATGgttg
tggaggaaaaagtggtGGTGGAATACGAGAGGAGGCGGTTGACCTTTCGA
ACTCTCTTGgaggaggacgaattGGCACCCTTGTTTGATGGCGCGTATTG
GCCTGGGACGATGGTCTGGCCTGTCTCCTTGTGGACCGCCGAATACTTGC
ACCGCACCTACCGGAGGGAGCTGAAGGGTGCCAGGGTCGTGGAGCTCGGC
TGTGggtggtagATGGGCGACGGTGACCAGATGAGAACCCCGGAAGATGA
CATTGGTGTCGGTTCGGAGGcttggggaagaagggaaagccaagcctggg
agggaggaggtcgggaagGCCATAGCAGCCGCCCACCCCAAGAAGTCACA
TGCGACTGGCCACCACAGGGGTACGAGTCCGATGTCATTCGAGTAataaa
agaagagggaatggatggaggagcaggacgcgATGGTGAGAAAGGAGCCA
TGgttgtggaggaaaaagtggtGGTGGAATACGAGAGGAGGCGGTTGACC
TTTCGAACTCTCTTGgaggaggacgaattGGCACCCTTGTTTGATGGCGC
GTATTGGCCTGGGACGATGGTCTGGCCTGTCTCCTTGTGGACCGCCGAAT
ACTTGCACCGCACCTACCGGAGGGAGCTGAAGGGTGCCAGGGTCGTGGAG
CTCGGCTGTGggtggtag
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Synonyms
Publications