EWM21226.1, cds9448 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|553180400|ref|XP_005853398.1| (hypothetical protein NGA_0497210 [Nannochloropsis gaditana CCMP526] >gi|422295661|gb|EKU22960.1| hypothetical protein NGA_0497210 [Nannochloropsis gaditana CCMP526] >gi|585101339|gb|EWM21226.1| hypothetical protein Naga_100507g1 [Nannochloropsis gaditana]) HSP 1 Score: 302.368 bits (773), Expect = 7.485e-104 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query: 1 MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCGW 151
MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCGW
Sbjct: 1 MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCGW 151
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|553195734|ref|XP_005856196.1| (hypothetical protein NGA_0497220 [Nannochloropsis gaditana CCMP526] >gi|422292874|gb|EKU20176.1| hypothetical protein NGA_0497220 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 233.802 bits (595), Expect = 3.588e-77 Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0
Query: 1 MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGT 118
MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWP T
Sbjct: 1 MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPAT 118
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|551657878|ref|XP_005831710.1| (hypothetical protein GUITHDRAFT_109509 [Guillardia theta CCMP2712] >gi|428175842|gb|EKX44730.1| hypothetical protein GUITHDRAFT_109509 [Guillardia theta CCMP2712]) HSP 1 Score: 60.8474 bits (146), Expect = 2.017e-8 Identity = 26/72 (36.11%), Postives = 46/72 (63.89%), Query Frame = 0
Query: 80 MVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRREL-KGARVVELGCG 150
M +E + + + ++++ LL E+ LAPLFDGA W GT +W ++ +++ Y ++L GA+++ELGCG
Sbjct: 1 MDAQEALDITFHKKKMHISLLLTENGLAPLFDGAAWAGTRLWEAAIAAIKFMSSKYAQQLGSGAKLLELGCG 72
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|1173961706|gb|OQS07676.1| (hypothetical protein THRCLA_00335 [Thraustotheca clavata]) HSP 1 Score: 60.077 bits (144), Expect = 5.031e-8 Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 0
Query: 81 VVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCGW 151
V EE++VV+ E + L LL+E ELAPLF GA W GT+VW ++ + Y+ +LK RV+ELG G
Sbjct: 13 VCEERIVVDVEDKSLDITLLLDEHELAPLFCGAAWAGTLVWEAAVALSNYVLNEV--DLKPLRVLELGAGL 81
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|298708208|emb|CBJ30547.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 56.9954 bits (136), Expect = 8.075e-7 Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 0
Query: 104 DELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCG 150
+E+AP+F GA W GT+VWP +L +Y+ R+ + GA VVELGCG
Sbjct: 25 EEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQAMVGATVVELGCG 71
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|1173933141|gb|OQR85008.1| (hypothetical protein ACHHYP_12443 [Achlya hypogyna]) HSP 1 Score: 56.6102 bits (135), Expect = 8.179e-7 Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 0
Query: 81 VVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCGW 151
V EE++V+ E + L LL+E+ELAPLF GA W GT+VW + + Y+ ++ RV+ELG G
Sbjct: 15 VCEERIVIHVEDKSLDISLLLDEEELAPLFCGAAWAGTLVWEAAELLSNYMLNEL--DVSSLRVLELGAGL 83 The following BLAST results are available for this feature:
BLAST of EWM21226.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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