EWM21226.1, cds9448 (CDS) Nannochloropsis gaditana

Overview
NameEWM21226.1
Unique Namecds9448
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:386695..386997 +
Alignment locationKK037253.1:387205..387250 +
Alignment locationKK037253.1:387377..387483 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21226.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100507g1.10253.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:386695..386997 +
KK037253.1supercontigKK037253.1:387205..387250 +
KK037253.1supercontigKK037253.1:387377..387483 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|553180400|ref|XP_005853398.1| (hypothetical protein NGA_0497210 [Nannochloropsis gaditana CCMP526] >gi|422295661|gb|EKU22960.1| hypothetical protein NGA_0497210 [Nannochloropsis gaditana CCMP526] >gi|585101339|gb|EWM21226.1| hypothetical protein Naga_100507g1 [Nannochloropsis gaditana])

HSP 1 Score: 302.368 bits (773), Expect = 7.485e-104
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query:    1 MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCGW 151
            MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCGW
Sbjct:    1 MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCGW 151          
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|553195734|ref|XP_005856196.1| (hypothetical protein NGA_0497220 [Nannochloropsis gaditana CCMP526] >gi|422292874|gb|EKU20176.1| hypothetical protein NGA_0497220 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 233.802 bits (595), Expect = 3.588e-77
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0
Query:    1 MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGT 118
            MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWP T
Sbjct:    1 MGDGDQMRTPEDDIGVGSEAWGRRESQAWEGGGREGHSSRPPQEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPAT 118          
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|551657878|ref|XP_005831710.1| (hypothetical protein GUITHDRAFT_109509 [Guillardia theta CCMP2712] >gi|428175842|gb|EKX44730.1| hypothetical protein GUITHDRAFT_109509 [Guillardia theta CCMP2712])

HSP 1 Score: 60.8474 bits (146), Expect = 2.017e-8
Identity = 26/72 (36.11%), Postives = 46/72 (63.89%), Query Frame = 0
Query:   80 MVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRREL-KGARVVELGCG 150
            M  +E + + + ++++    LL E+ LAPLFDGA W GT +W  ++   +++   Y ++L  GA+++ELGCG
Sbjct:    1 MDAQEALDITFHKKKMHISLLLTENGLAPLFDGAAWAGTRLWEAAIAAIKFMSSKYAQQLGSGAKLLELGCG 72          
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|1173961706|gb|OQS07676.1| (hypothetical protein THRCLA_00335 [Thraustotheca clavata])

HSP 1 Score: 60.077 bits (144), Expect = 5.031e-8
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 0
Query:   81 VVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCGW 151
            V EE++VV+ E + L    LL+E ELAPLF GA W GT+VW  ++  + Y+      +LK  RV+ELG G 
Sbjct:   13 VCEERIVVDVEDKSLDITLLLDEHELAPLFCGAAWAGTLVWEAAVALSNYVLNEV--DLKPLRVLELGAGL 81          
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|298708208|emb|CBJ30547.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 56.9954 bits (136), Expect = 8.075e-7
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 0
Query:  104 DELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCG 150
            +E+AP+F GA W GT+VWP +L   +Y+    R+ + GA VVELGCG
Sbjct:   25 EEMAPIFSGACWAGTVVWPAALDLCDYMSEHLRQAMVGATVVELGCG 71          
BLAST of EWM21226.1 vs. NCBI_GenBank
Match: gi|1173933141|gb|OQR85008.1| (hypothetical protein ACHHYP_12443 [Achlya hypogyna])

HSP 1 Score: 56.6102 bits (135), Expect = 8.179e-7
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 0
Query:   81 VVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCGW 151
            V EE++V+  E + L    LL+E+ELAPLF GA W GT+VW  +   + Y+      ++   RV+ELG G 
Sbjct:   15 VCEERIVIHVEDKSLDISLLLDEEELAPLFCGAAWAGTLVWEAAELLSNYMLNEL--DVSSLRVLELGAGL 83          
The following BLAST results are available for this feature:
BLAST of EWM21226.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|553180400|ref|XP_005853398.1|7.485e-104100.00hypothetical protein NGA_0497210 [Nannochloropsis ... [more]
gi|553195734|ref|XP_005856196.1|3.588e-7799.15hypothetical protein NGA_0497220 [Nannochloropsis ... [more]
gi|551657878|ref|XP_005831710.1|2.017e-836.11hypothetical protein GUITHDRAFT_109509 [Guillardia... [more]
gi|1173961706|gb|OQS07676.1|5.031e-845.07hypothetical protein THRCLA_00335 [Thraustotheca c... [more]
gi|298708208|emb|CBJ30547.1|8.075e-751.06conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173933141|gb|OQR85008.1|8.179e-740.85hypothetical protein ACHHYP_12443 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9479rna9479Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications