EWM21225.1, cds9447 (CDS) Nannochloropsis gaditana

Overview
NameEWM21225.1
Unique Namecds9447
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:384809..385002 +
Alignment locationKK037253.1:385135..385241 +
Alignment locationKK037253.1:385394..385482 +
Alignment locationKK037253.1:385704..385820 +
Alignment locationKK037253.1:386015..386128 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21225.1
Producttrigger factor
Orig transcript idgnl|cribi|Naga_100507g2.10252.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:384809..385002 +
KK037253.1supercontigKK037253.1:385135..385241 +
KK037253.1supercontigKK037253.1:385394..385482 +
KK037253.1supercontigKK037253.1:385704..385820 +
KK037253.1supercontigKK037253.1:386015..386128 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006457protein folding
GO:0015031protein transport
Vocabulary: INTERPRO
TermDefinition
IPR008881Trigger_fac_ribosome-bd_bac
Homology
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|585101338|gb|EWM21225.1| (trigger factor [Nannochloropsis gaditana])

HSP 1 Score: 423.32 bits (1087), Expect = 6.489e-150
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query:    1 MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT 206
            MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT
Sbjct:    1 MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT 206          
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|553180396|ref|XP_005853397.1| (trigger factor [Nannochloropsis gaditana CCMP526] >gi|553195716|ref|XP_005856190.1| trigger factor [Nannochloropsis gaditana CCMP526] >gi|422292868|gb|EKU20170.1| trigger factor [Nannochloropsis gaditana CCMP526] >gi|422295660|gb|EKU22959.1| trigger factor [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 419.853 bits (1078), Expect = 1.513e-148
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0
Query:    1 MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT 206
            MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAE PVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKG+MPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT
Sbjct:    1 MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAERPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGIMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT 206          
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|397567583|gb|EJK45670.1| (hypothetical protein THAOC_35700 [Thalassiosira oceanica])

HSP 1 Score: 68.9366 bits (167), Expect = 6.246e-11
Identity = 30/103 (29.13%), Postives = 59/103 (57.28%), Query Frame = 0
Query:   77 VCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTF 179
            V  + +  +  G  +K    Q  K  +  ANFPGFRKG +PP+A+  ++  A+  +++  C  ++E +GLE+ P ++  +   + +  E++ K Y++G+D+ F
Sbjct:   73 VYNFWLTGKADGGKIKSLIQQTEKEASRKANFPGFRKGQIPPYAMPQIRTFAIQEALIKTCEESLEAYGLESLPGSDGSV--TINEKVEDIVKGYKVGSDVEF 173          
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|224009842|ref|XP_002293879.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970551|gb|EED88888.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 68.1662 bits (165), Expect = 1.512e-10
Identity = 33/103 (32.04%), Postives = 60/103 (58.25%), Query Frame = 0
Query:   77 VCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTF 179
            V  + + A   G ++KK   Q  K  +  ANFPGFRKG +PP+A   + + A+  +++  C  ++E +GLE+   +E ++   V +  +++ K Y++GTD+ F
Sbjct:   80 VHSFWLRAVANGEEIKKLRMQTEKEASKKANFPGFRKGQIPPYAQPRMTMFAIQEAVIKTCEQSLEAYGLESLQGSEGEV--TVNEDMQQVCKTYKLGTDIEF 180          
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|219113559|ref|XP_002186363.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583213|gb|ACI65833.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 67.0106 bits (162), Expect = 4.094e-10
Identity = 39/134 (29.10%), Postives = 69/134 (51.49%), Query Frame = 0
Query:   72 SAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETD 205
            S +  V  + + AE+ G  +K+  +Q LK     ANFPGFRKG +PP+A   +   +V  +I+     A+   GL++ P +  ++   V +  E ++K Y++G ++ F  + +A+    K    D T E +  D
Sbjct:   75 SDDGAVYSFWMTAEVEGALIKEIRSQILKDAAKKANFPGFRKGQVPPYAQPQITGFSVQEAIIKTVEAAVNSFGLKSIPGSAGEIN--VNEDVEAISKGYKVGDNINFTAKFNAVFDAEKQNLDDETKEEKVID 206          
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|1210528336|dbj|GAX13025.1| (hypothetical protein FisN_2Hh509 [Fistulifera solaris])

HSP 1 Score: 62.7734 bits (151), Expect = 1.323e-8
Identity = 30/113 (26.55%), Postives = 61/113 (53.98%), Query Frame = 0
Query:   72 SAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEID 184
            S   P   + + A + G  +K  + + LK     ANFPGFRKG +PP+A+  +   ++  +I+     A++ HGL+    ++ ++ +K  ++ E++ K Y++G  + F   ++
Sbjct:   68 SENGPAYQFWMTATVDGNMIKDNHTELLKNAKKKANFPGFRKGQVPPYAMPQITQFSIQEAIIKTVEAAVDAHGLKALSGSDGQVEVK--ENVEDMVKGYKLGDPIQFTAVLN 178          
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|1072222873|gb|OEU07631.1| (hypothetical protein FRACYDRAFT_271895 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 63.5438 bits (153), Expect = 1.340e-8
Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 0
Query:   70 DPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEI--GTDLTFACEIDAIGVPGKATSL 195
            +  A   V  + ++A + GP +K+ ++  LK     ANFPGFRKG +PP A+  +K  AV   ++  C++A++ +GL++   N     ++V +   E+AK Y++     + F    +AI  P  A  L
Sbjct:   99 EEDANETVYKFWLKARVEGPLIKELHSTVLKDSAKKANFPGFRKGQVPPFAMPQIKGFAVQEGVIRTCQSAVDAYGLKS--VNGIDGEVEVLEDIPEIAKVYKLPGNEGIEFTAYFNAIYDPAYAEQL 224          
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|1210530395|dbj|GAX10979.1| (hypothetical protein FisN_2Lh509 [Fistulifera solaris])

HSP 1 Score: 62.3882 bits (150), Expect = 1.358e-8
Identity = 30/110 (27.27%), Postives = 59/110 (53.64%), Query Frame = 0
Query:   72 SAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFAC 181
            S   P   + + A + G  +K  + + LK     ANFPGFRKG +PP+A+  +   ++  +I+     A+++HGL+    ++ ++ +K  +  E++ K Y++G  + F  
Sbjct:   67 SDNGPAYQFWMTATVDGNMIKDNHTELLKNAKKKANFPGFRKGQVPPYAMPQITQFSIQEAIIKTVEAAVDVHGLKALSGSDGQVEVK--EKVEDMVKGYKLGDPIQFTA 174          
The following BLAST results are available for this feature:
BLAST of EWM21225.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585101338|gb|EWM21225.1|6.489e-150100.00trigger factor [Nannochloropsis gaditana][more]
gi|553180396|ref|XP_005853397.1|1.513e-14899.03trigger factor [Nannochloropsis gaditana CCMP526] ... [more]
gi|397567583|gb|EJK45670.1|6.246e-1129.13hypothetical protein THAOC_35700 [Thalassiosira oc... [more]
gi|224009842|ref|XP_002293879.1|1.512e-1032.04predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219113559|ref|XP_002186363.1|4.094e-1029.10predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210528336|dbj|GAX13025.1|1.323e-826.55hypothetical protein FisN_2Hh509 [Fistulifera sola... [more]
gi|1072222873|gb|OEU07631.1|1.340e-830.47hypothetical protein FRACYDRAFT_271895 [Fragilario... [more]
gi|1210530395|dbj|GAX10979.1|1.358e-827.27hypothetical protein FisN_2Lh509 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9478rna9478Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications