rna9478, rna9478 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9478
Unique Name	rna9478
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	936
Alignment location	KK037253.1:384809..386128 +

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Properties


Property Name	Value
Product	trigger factor
Orig transcript id	gnl\|cribi\|Naga_100507g2.10252.mrna
Orig protein id	gnl\|cribi\|Naga_100507g2.10252
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:384809..386128 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100507g2	gene9199	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9478	rna9478-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21225.1	cds9447	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:384809..386128+
coding sequence from alignment at KK037253.1:384809..386128+

mRNA sequence

>rna9478 ID=rna9478|Name=rna9478|organism=Nannochloropsis gaditana|type=mRNA|length=936bp
ATGCTTCTTTCCAAGATGGGAAACCAACCACCGACTAAGGCCACACTCTC
TGGGTTAGTCACAAGAATTTGGCGCTACCCTTATAGAGCTAATGGACAAG
AGATGGAAGTCCTAATCATGTTACGGCATCATCGCCATAAGGGTGAAAAG
ATCATATATGTCGACGGGCAAATTGTTCACCACTCCATCGACCGTATTGA
TAGCGGGGGAATCGTATCCTTCGAAATTCTTCAAGGAAAAGTGCCGTGTG
AGCTCACCGTCGTTGACTACCCTGGGCTCACTTCCTACTCGCTGGTTATT
CGAGGTCGTCCATGGGCCTGCGACACAGAGCAAGCGGACGGTGGAGAGGG
AGGAAGGCAGCCAGTGGGTTTATCAGGAAATTTGTCCATAGAAAGTGTGA
CGGTAGCTTCTGTAGCTTTGTTGCCATTGGACACTGAAAAGGGAGGAGAT
GACAGAGAAAAAAGGAAGACGAGGGAGGATAAACTGGAAGATGAGGTTGA
GGAAGAGGAGGAGGAAACCCTACTGCAATCATCTTCTCGAGGCGTCGTCA
GGTCCGGTGGGAAAGCGAAAGTGGGAGCTTTCTACACACTGAAGACGCGG
TGGGCCGCGACGGAGGGAACCGGAGCCGAGGAAGGAGAGCAAGGAGCGAA
CGGGAGGGCGGGTCCCAAGGAAAAGGAACACCGGTTTCGGTTCCGAGACT
TTGACAAACTGGATGTGAAAATTCGGTCTTACTTTTGGGGACACCACCTT
GCTTCCTCCCTCCCTCGTCTTCCTCCCAAATATCTGAAAGCCCTCACGGC
GCACACTTCCCCCTCCTTCCTGGAGGAGAGGCGCGCAGCATTGGACGCCT
ACATGCAGAGACTACAGAACTTCCCATACGTCCAACGGAATCCGGATTGG
CAAGCGTTTGTACTGGGGGAGCCGGGCTTAAGATAA

protein sequence of rna9478

>rna9478-protein ID=rna9478-protein|Name=rna9478|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVI
GEILPTLDPTLKVTRVSVEDPSAEHPVCGYLVEAEIYGPDVKKTYNQALK
AGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFP
ANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAE
GQETDT

mRNA from alignment at KK037253.1:384809..386128+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9478 ID=rna9478|Name=rna9478|organism=Nannochloropsis gaditana|type=mRNA|length=1320bp|location=Sequence derived from alignment at KK037253.1:384809..386128+ (Nannochloropsis gaditana)
ATGCCCGCATGTAGCTTTCCTGTCCTGCTGGTCATCtttttcaacctcct
cttccccccggtGACTgtcgccttcgtcctctcgTCCCCCTTAGCAACGC
CAAACCAGCGATCTGTGGTTTGTTTACGCAGTACAATACAGAATGTAATC
GGAGAAATACTACCCACCCTGGATCCCACCTTGAAAGTTACAAGGTAAGG
CATGTCGTGGCCAAAGTACACTATACCCGCATAATACGTCCTCAAGTGGC
GTCAGATTTTTACGTTTCAAGTTATTTTTTTACAACGAATGTCATCATTT
CTTGATGATGACATCTTTTCATGCAGAGTATCGGTTGAAGACCCCTCCGC
CGAGCACCCTGTCTGTGGCTATTTGGTGGAAGCCGAGATATATGGGCCCG
ACGTGAAGAAAACGTACAACCAGGCATTGAAAGGTACGAAAGCAGGGGGA
AAGTGGTGCTCCAAGCAGGCTGAATACTCAGTCGCTCgactcttttcttc
tcttgtTGATTTTTCTGGACtgtttgatggaggaggatcatcccttgccc
tcttATTCGTCTTGTTGTATCCTCTCACGTCACAGCCGGGACCCTGAACG
CCAATTTCCCGGGCTTTCGGAAGGGCGTCATGCCCCCCCATGCGTTGGTG
GGCGTGAAACTTAGCGCTGTCACGGTACGGTGCCTTTTGCAGCTTGGTCG
GGGTGCTTTTGACCGTGTCTGTCGTGTATCAAATACCTCGATCGCGACGC
TTCAAATTCATGAGATTCGTGTCATATGAGGCGCATAGATACATATCTGC
CCTACGACACAAATTGGTTATCCACCTCATTGTCATTTGACTCCCCTTAA
ACCCGCCTTTtacccttcttgccctcccggGTTATTACCCCGCAGGCTTC
CATCATGGACGCCTGCCGAACGGCCATGGAGATGCACGGCTTGGAGAACT
TTCCCGCCAATGAACGCAAGCTCAGGATGAAGGTGCCCCAAAGCACAGAG
GAGTTGGCAAAGGTATTTCTCCTAACCGCCCTTAATTCCACTTTTCTTac
gccttttcttttcatgtCTCCCTCGTTTTTAGAAAGACATGCATGGGGTG
ACTTCTTTGGTCGGGACCGGCGGGACTCTGGTGGAGAGAATTCTAACTCA
CAaatcttccctcttcttactgcttccatcctccttgtACCCTTGCTTCT
TCTTAGCAATACGAGATCGGCACTGATTTGACTTTCGCTTGTGAAATAGA
TGCTATCGGTGTCCCGGGCAAAGCCACATCGCTTGATACGACAGCAGAGG
GTCAAGAGACTGATACTTAA

Coding sequence (CDS) from alignment at KK037253.1:384809..386128+

>rna9478 ID=rna9478|Name=rna9478|organism=Nannochloropsis gaditana|type=CDS|length=3105bp|location=Sequence derived from alignment at KK037253.1:384809..386128+ (Nannochloropsis gaditana)
ATGCCCGCATGTAGCTTTCCTGTCCTGCTGGTCATCtttttcaacctcct
cttccccccggtGACTgtcgccttcgtcctctcgTCCCCCTTAGCAACGC
CAAACCAGCGATCTGTGGTTTGTTTACGCAGTACAATACAGAATGTAATC
GGAGAAATACTACCCACCCTGGATCCCACCTTGAAAGTTACAAGAGTATC
GGTTGAAGACCCCTCCGCCGAGCACCCTGTCTGTGGCTATTTGGTGGAAG
CCGAGATATATGGGCCCGACGTGAAGAAAACGTACAACCAGGCATTGAAA
GCCGGGACCCTGAACGCCAATTTCCCGGGCTTTCGGAAGGGCGTCATGCC
CCCCCATGCGTTGGTGGGCGTGAAACTTAGCGCTGTCACGGCTTCCATCA
TGGACGCCTGCCGAACGGCCATGGAGATGCACGGCTTGGAGAACTTTCCC
GCCAATGAACGCAAGCTCAGGATGAAGGTGCCCCAAAGCACAGAGGAGTT
GGCAAAGCAATACGAGATCGGCACTGATTTGACTTTCGCTTGTGAAATAG
ATGCTATCGGTGTCCCGGGCAAAGCCACATCGCTTGATACGACAGCAGAG
GGTCAAGAGACTGATACTTAAATGCCCGCATGTAGCTTTCCTGTCCTGCT
GGTCATCtttttcaacctcctcttccccccggtGACTgtcgccttcgtcc
tctcgTCCCCCTTAGCAACGCCAAACCAGCGATCTGTGGTTTGTTTACGC
AGTACAATACAGAATGTAATCGGAGAAATACTACCCACCCTGGATCCCAC
CTTGAAAGTTACAAGAGTATCGGTTGAAGACCCCTCCGCCGAGCACCCTG
TCTGTGGCTATTTGGTGGAAGCCGAGATATATGGGCCCGACGTGAAGAAA
ACGTACAACCAGGCATTGAAAGCCGGGACCCTGAACGCCAATTTCCCGGG
CTTTCGGAAGGGCGTCATGCCCCCCCATGCGTTGGTGGGCGTGAAACTTA
GCGCTGTCACGGCTTCCATCATGGACGCCTGCCGAACGGCCATGGAGATG
CACGGCTTGGAGAACTTTCCCGCCAATGAACGCAAGCTCAGGATGAAGGT
GCCCCAAAGCACAGAGGAGTTGGCAAAGCAATACGAGATCGGCACTGATT
TGACTTTCGCTTGTGAAATAGATGCTATCGGTGTCCCGGGCAAAGCCACA
TCGCTTGATACGACAGCAGAGGGTCAAGAGACTGATACTTAAATGCCCGC
ATGTAGCTTTCCTGTCCTGCTGGTCATCtttttcaacctcctcttccccc
cggtGACTgtcgccttcgtcctctcgTCCCCCTTAGCAACGCCAAACCAG
CGATCTGTGGTTTGTTTACGCAGTACAATACAGAATGTAATCGGAGAAAT
ACTACCCACCCTGGATCCCACCTTGAAAGTTACAAGAGTATCGGTTGAAG
ACCCCTCCGCCGAGCACCCTGTCTGTGGCTATTTGGTGGAAGCCGAGATA
TATGGGCCCGACGTGAAGAAAACGTACAACCAGGCATTGAAAGCCGGGAC
CCTGAACGCCAATTTCCCGGGCTTTCGGAAGGGCGTCATGCCCCCCCATG
CGTTGGTGGGCGTGAAACTTAGCGCTGTCACGGCTTCCATCATGGACGCC
TGCCGAACGGCCATGGAGATGCACGGCTTGGAGAACTTTCCCGCCAATGA
ACGCAAGCTCAGGATGAAGGTGCCCCAAAGCACAGAGGAGTTGGCAAAGC
AATACGAGATCGGCACTGATTTGACTTTCGCTTGTGAAATAGATGCTATC
GGTGTCCCGGGCAAAGCCACATCGCTTGATACGACAGCAGAGGGTCAAGA
GACTGATACTTAAATGCCCGCATGTAGCTTTCCTGTCCTGCTGGTCATCt
ttttcaacctcctcttccccccggtGACTgtcgccttcgtcctctcgTCC
CCCTTAGCAACGCCAAACCAGCGATCTGTGGTTTGTTTACGCAGTACAAT
ACAGAATGTAATCGGAGAAATACTACCCACCCTGGATCCCACCTTGAAAG
TTACAAGAGTATCGGTTGAAGACCCCTCCGCCGAGCACCCTGTCTGTGGC
TATTTGGTGGAAGCCGAGATATATGGGCCCGACGTGAAGAAAACGTACAA
CCAGGCATTGAAAGCCGGGACCCTGAACGCCAATTTCCCGGGCTTTCGGA
AGGGCGTCATGCCCCCCCATGCGTTGGTGGGCGTGAAACTTAGCGCTGTC
ACGGCTTCCATCATGGACGCCTGCCGAACGGCCATGGAGATGCACGGCTT
GGAGAACTTTCCCGCCAATGAACGCAAGCTCAGGATGAAGGTGCCCCAAA
GCACAGAGGAGTTGGCAAAGCAATACGAGATCGGCACTGATTTGACTTTC
GCTTGTGAAATAGATGCTATCGGTGTCCCGGGCAAAGCCACATCGCTTGA
TACGACAGCAGAGGGTCAAGAGACTGATACTTAAATGCCCGCATGTAGCT
TTCCTGTCCTGCTGGTCATCtttttcaacctcctcttccccccggtGACT
gtcgccttcgtcctctcgTCCCCCTTAGCAACGCCAAACCAGCGATCTGT
GGTTTGTTTACGCAGTACAATACAGAATGTAATCGGAGAAATACTACCCA
CCCTGGATCCCACCTTGAAAGTTACAAGAGTATCGGTTGAAGACCCCTCC
GCCGAGCACCCTGTCTGTGGCTATTTGGTGGAAGCCGAGATATATGGGCC
CGACGTGAAGAAAACGTACAACCAGGCATTGAAAGCCGGGACCCTGAACG
CCAATTTCCCGGGCTTTCGGAAGGGCGTCATGCCCCCCCATGCGTTGGTG
GGCGTGAAACTTAGCGCTGTCACGGCTTCCATCATGGACGCCTGCCGAAC
GGCCATGGAGATGCACGGCTTGGAGAACTTTCCCGCCAATGAACGCAAGC
TCAGGATGAAGGTGCCCCAAAGCACAGAGGAGTTGGCAAAGCAATACGAG
ATCGGCACTGATTTGACTTTCGCTTGTGAAATAGATGCTATCGGTGTCCC
GGGCAAAGCCACATCGCTTGATACGACAGCAGAGGGTCAAGAGACTGATA
CTTAA

Synonyms

Publications