EWM21225.1, cds9447 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|585101338|gb|EWM21225.1| (trigger factor [Nannochloropsis gaditana]) HSP 1 Score: 423.32 bits (1087), Expect = 6.489e-150 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query: 1 MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT 206
MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT
Sbjct: 1 MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT 206
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|553180396|ref|XP_005853397.1| (trigger factor [Nannochloropsis gaditana CCMP526] >gi|553195716|ref|XP_005856190.1| trigger factor [Nannochloropsis gaditana CCMP526] >gi|422292868|gb|EKU20170.1| trigger factor [Nannochloropsis gaditana CCMP526] >gi|422295660|gb|EKU22959.1| trigger factor [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 419.853 bits (1078), Expect = 1.513e-148 Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0
Query: 1 MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT 206
MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAE PVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKG+MPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT
Sbjct: 1 MPACSFPVLLVIFFNLLFPPVTVAFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAERPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGIMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETDT 206
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|397567583|gb|EJK45670.1| (hypothetical protein THAOC_35700 [Thalassiosira oceanica]) HSP 1 Score: 68.9366 bits (167), Expect = 6.246e-11 Identity = 30/103 (29.13%), Postives = 59/103 (57.28%), Query Frame = 0
Query: 77 VCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTF 179
V + + + G +K Q K + ANFPGFRKG +PP+A+ ++ A+ +++ C ++E +GLE+ P ++ + + + E++ K Y++G+D+ F
Sbjct: 73 VYNFWLTGKADGGKIKSLIQQTEKEASRKANFPGFRKGQIPPYAMPQIRTFAIQEALIKTCEESLEAYGLESLPGSDGSV--TINEKVEDIVKGYKVGSDVEF 173
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|224009842|ref|XP_002293879.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970551|gb|EED88888.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 68.1662 bits (165), Expect = 1.512e-10 Identity = 33/103 (32.04%), Postives = 60/103 (58.25%), Query Frame = 0
Query: 77 VCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTF 179
V + + A G ++KK Q K + ANFPGFRKG +PP+A + + A+ +++ C ++E +GLE+ +E ++ V + +++ K Y++GTD+ F
Sbjct: 80 VHSFWLRAVANGEEIKKLRMQTEKEASKKANFPGFRKGQIPPYAQPRMTMFAIQEAVIKTCEQSLEAYGLESLQGSEGEV--TVNEDMQQVCKTYKLGTDIEF 180
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|219113559|ref|XP_002186363.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583213|gb|ACI65833.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 67.0106 bits (162), Expect = 4.094e-10 Identity = 39/134 (29.10%), Postives = 69/134 (51.49%), Query Frame = 0
Query: 72 SAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATSLDTTAEGQETD 205
S + V + + AE+ G +K+ +Q LK ANFPGFRKG +PP+A + +V +I+ A+ GL++ P + ++ V + E ++K Y++G ++ F + +A+ K D T E + D
Sbjct: 75 SDDGAVYSFWMTAEVEGALIKEIRSQILKDAAKKANFPGFRKGQVPPYAQPQITGFSVQEAIIKTVEAAVNSFGLKSIPGSAGEIN--VNEDVEAISKGYKVGDNINFTAKFNAVFDAEKQNLDDETKEEKVID 206
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|1210528336|dbj|GAX13025.1| (hypothetical protein FisN_2Hh509 [Fistulifera solaris]) HSP 1 Score: 62.7734 bits (151), Expect = 1.323e-8 Identity = 30/113 (26.55%), Postives = 61/113 (53.98%), Query Frame = 0
Query: 72 SAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEID 184
S P + + A + G +K + + LK ANFPGFRKG +PP+A+ + ++ +I+ A++ HGL+ ++ ++ +K ++ E++ K Y++G + F ++
Sbjct: 68 SENGPAYQFWMTATVDGNMIKDNHTELLKNAKKKANFPGFRKGQVPPYAMPQITQFSIQEAIIKTVEAAVDAHGLKALSGSDGQVEVK--ENVEDMVKGYKLGDPIQFTAVLN 178
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|1072222873|gb|OEU07631.1| (hypothetical protein FRACYDRAFT_271895 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 63.5438 bits (153), Expect = 1.340e-8 Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 0
Query: 70 DPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEI--GTDLTFACEIDAIGVPGKATSL 195
+ A V + ++A + GP +K+ ++ LK ANFPGFRKG +PP A+ +K AV ++ C++A++ +GL++ N ++V + E+AK Y++ + F +AI P A L
Sbjct: 99 EEDANETVYKFWLKARVEGPLIKELHSTVLKDSAKKANFPGFRKGQVPPFAMPQIKGFAVQEGVIRTCQSAVDAYGLKS--VNGIDGEVEVLEDIPEIAKVYKLPGNEGIEFTAYFNAIYDPAYAEQL 224
BLAST of EWM21225.1 vs. NCBI_GenBank
Match: gi|1210530395|dbj|GAX10979.1| (hypothetical protein FisN_2Lh509 [Fistulifera solaris]) HSP 1 Score: 62.3882 bits (150), Expect = 1.358e-8 Identity = 30/110 (27.27%), Postives = 59/110 (53.64%), Query Frame = 0
Query: 72 SAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFAC 181
S P + + A + G +K + + LK ANFPGFRKG +PP+A+ + ++ +I+ A+++HGL+ ++ ++ +K + E++ K Y++G + F
Sbjct: 67 SDNGPAYQFWMTATVDGNMIKDNHTELLKNAKKKANFPGFRKGQVPPYAMPQITQFSIQEAIIKTVEAAVDVHGLKALSGSDGQVEVK--EKVEDMVKGYKLGDPIQFTA 174 The following BLAST results are available for this feature:
BLAST of EWM21225.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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