rna9477, rna9477 (mRNA) Nannochloropsis gaditana

Overview
Namerna9477
Unique Namerna9477
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1964
Alignment locationKK037253.1:382213..383901 +

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Properties
Property NameValue
Productpx domain containing protein
Orig transcript idgnl|cribi|Naga_100507g3.10254.mrna
Orig protein idgnl|cribi|Naga_100507g3.10254
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:382213..383901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100507g3gene9198Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9477rna9477-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21227.1cds9446Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9477 ID=rna9477|Name=rna9477|organism=Nannochloropsis gaditana|type=mRNA|length=1964bp
CTACTTCCCAGCCGTACCTCTGTGCTTTCCACACTCCCACACGGGCCGGA
GAGGCAGGGGGGAAGGGCGGGCGGGGGGTTCAGGGCCTGTAGAGGAGGTT
GCCTTGGCCCCGCTCTGTTTCTTTGAGTCCCTAGACACGCAGGCTTTCTC
CCTCCTCCCCTTCCTCCTGGTCGCCGCCTCCTCCCCTTCCTTCCCTGCCT
CCTCCTGCATGGGGTTCCGCCCCCCGCTCCCCTCCTCCTCCCTTCCTCTC
TCCCTCCCTCGTCTCCTTCCCCGCCGCGGAAAGCCTTCGGATCGATTTAC
GAGCAGAGGGCTGGGCTCTCTATTTGTGGGAGGACAAGTCAACGCATCGC
ATTGTGCTCTCGGTCAGCAAGCCTAAGAACGAAATCCTCGACCCTCCTCT
CTGCGCCCGCCTGGGGCTCACCTTCTTCGAGCTCCTTGAGAGGCTCAGAC
AGATTCACGCCCCCCGCGCCAAGATTGCCCTCAGACTGCCCGCCTCCAGG
GCCGCTACCAATACCAGCTCCACGGCCGGACTCTCCTCCTCCTCTTCCGC
CCGCTTTCCCCTTCCCGCCTCCTCCTTCCTCCCTCCCGCCCAACACCTCC
CCACGTACGACATGGTCGACGTCCTGATGGCCCTTCGGAGCCTCGAGGCC
CCCGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGCAGGAGAAGCGATCAG
GGAGGAGGAGAAGGAGGACGAAAGCCACGACGTCCTCTCCGACCGTTACA
AACCTCCTACGTTCAGGTTTCCTCTGCTCCGTCCCTCCTCCTCCTCCATC
TCCTCCTCAGCCTCCTCCCTTTCCTCCTCCTTGGCTCATCCACCCGTCCT
TCCCATCACTGCCTTTGCCCCGTGGGTGGAAGCTCAGGCCCTCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTCCTCCTCGCGGAGG
CGGCCGGACCCTTGGGCTGACGCCTATCCCGACGTCTCCCTCCTGGTCAA
GACGCAAAGGCGTTGGGGGAATGAAGAGAGAGGGAAAGAGGCGCATGTGT
GGTGCCCGGTGGTCGTGTTGCAGGCGGGGGAGGTGAAGGCGGGCATGGGA
GAGTGCGAGACCCTCGTAGATCCAGGTAGGAGGGGGGGGGGAGGGGAAAA
GCGCTTGGAGGGCAGAAGGGATAGGGACAGGCGCATTGAAGCTTCCTTCG
GAAAGCATCCTGTCTCCTGTGCATTTTCGTTGGGACGCTGCGATGTGTGC
CCGTGCTCTCGCCTCCTGCTCCCGCTCCTGTGCTCGATCGATCCGCTTCC
CTCCCACCCCATCCCCACGCCTTCCCTTCTCATCACTCTTACAACGTAGG
GCAATGGGAGATCGAGGCAATGGGGGGCGGTGATTCCCATTTTGTGCTTA
AATGGGGGGGTAAATATATCTGTGCGGTCCGTGCACGCGAGGGAGAGATG
GGGACTGGACGGATGACACTGATGACTGCCGACAAGGCGGGGGCGAAAGC
AACTGTAGCTTTGTTTCGAGCCCAGCTTTTAGCAAGGGACGGCGAGAATG
GAGAACTTCCCTCCAAGCTCTTCGCCGTCGTGGGAATGGGGGCGAAGGAG
AAGGAGGTAGGTGTGTGGAATGACGGTCAGGTGGGGATGAGGGCCGAAGG
GGAGACAGGGCCCGAATTGGAGGCCTGTTGGACCCTAGACTTTCTGAAGT
GAGCATTCGGTGCCAACATGTGCAACTTTAATTTTTGTAAGGAAAGGAAT
GGCAACTGTCGGCTCAAATGATCGCGCTTCCGTACTGCTTCGCGTTGTCT
TTCTTGTTTGGAGAGAACAGGCTGAGTCTTTGCACCCGATCACTGTCTAT
ACTCCCCGAAACGTCCACTTGAATGAAACCAGGCTATGCGTACCGACGCA
AGCGTTTTCCCCAATTCTTTAAAATACACCTGAACACTTTTATTCCCATT
CCAGTGCAGTGCCC
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protein sequence of rna9477

>rna9477-protein ID=rna9477-protein|Name=rna9477|organism=Nannochloropsis gaditana|type=polypeptide|length=311bp
MLLSKMGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEK
IIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVI
RGRPWACDTEQADGGEGGRQPVGLSGNLSIESVTVASVALLPLDTEKGGD
DREKRKTREDKLEDEVEEEEEETLLQSSSRGVVRSGGKAKVGAFYTLKTR
WAATEGTGAEEGEQGANGRAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHL
ASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDW
QAFVLGEPGLR
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mRNA from alignment at KK037253.1:382213..383901+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9477 ID=rna9477|Name=rna9477|organism=Nannochloropsis gaditana|type=mRNA|length=1689bp|location=Sequence derived from alignment at KK037253.1:382213..383901+ (Nannochloropsis gaditana)
ATGCTTCTTGTACGTAGTTTGAAAATTTGCGCCGAAAATGACGGCATGGG CAGCGGTAGGTACGCATGCAACATTAATGCATCCCTTTGTGTTCCTGCAT TCATCCTTGGACCGGCCAGTCCAAGATGGGAAACCAACCACCGACTAAGG CCACACTCTCTGGGTTAGTCACAAGAATTTGGCGCTACCCTTATAGAGCT AATGGACAAGAGATGGAAGTCCTAATCATGTTACGGTAAGGGAGGCGGCA CGTTTAGAAGGATACGTATTGAGATACAAGGATTGAGTAAGAAAAATGAA AGATAGCAAATTCTCACTTGGCAATCACCCTGACAGGCATCATCGCCATA AGGGTGAAAAGATCATATATGTCGACGGTACGTAAACGACCAAAGAACTA AAAAAAAAGCTACCGTACCCTGACAGCGTCTTCTCGACGTTCTGCGTGCA AGTCTTTTCCCATCCCGAAAATTTACATAAttcgctttctttttctcccc gtTTGAATAGGGCAAATTGTTCACCACTCCATCGACCGTATTGATAGCGG GGGAATCGTATCCTTCGAAATTCTTCAAGGAAAAGTGCCGTGTGAGCTCA CCGTCGTTGACTACCCTGGTCAGTCGCAAAGGAATCGACAGCGCATGATT TCCATCACCACACGCACGCGCACTTTTCATCTCCATTGAATTGATATACA CCTTTAACATTTCCCAACCATTAGGGCTCACTTCCTACTCGCTGGTTATT CGAGGTCGTCCATGGGCCTGCGACACAGAGCAAGCGgacggtggagaggg aggaaggcagccAGTGGGTTTATCAGGAAATTTGTCCATAGAAAGTGTGA CGGTAGCTTCTGTAGCTTTGTTGCCATTGGACactgaaaagggaggagat gacagagaaaaaaggaagacgagggaggataaACTGGAAGATgaggttga ggaagaggaggaggaaaccctACTGCAATCATCTTCTCGAGGCGTCGTCA GGTCCGGTGGGAAAGCGAAAGTGGGAGCTTTCTACACACTGAAGACGCGG TGGGCCGCGACGGAGGGAACCGGagccgaggaaggagagcaaggagcgaa cgggagggcgggtcccaaggaaaaggaacaCCGGTTTCGGTTCCGAGACT TTGACAAACTGGATGTGAAAGTATGTGGAACGGACGTCGAGATTGATACG AAAGGATCGAGCAGGTGTCCTGCGTGGTCTTGTTACAGGCGTCcatccca tcccttcctcacctttctCGTCCTAGGTTCGACATGTCGCTCTCTCttat gccttcctcctcaaaaTCCTCAAATGcggccctcctttctttcccttttc agATTCGGTCTTACTTTTGGGGACACcaccttgcttcctccctccctcgt cttcctcccaaaTATCTGAAAGCCCTCACGGCGCacacttccccctcctt cctggaggagaggcgcGCAGCATTGGACGCCTACATGCAGAGACTACAGG TAAGCATGGGGAAAACCAAGACCACAGCAACACAGACTCCTGGGTGTCCT ACTTAATTAGCAGcgccatctctttctcctcctcacgctacttttttaat ttttcttcctctctttttaGAACTTCCCATACGTCCAACGGAATCCGGAT TGGCAAGCGTTTGTACTGGGGGAGCCGGGCTTAAGATAA
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Coding sequence (CDS) from alignment at KK037253.1:382213..383901+

>rna9477 ID=rna9477|Name=rna9477|organism=Nannochloropsis gaditana|type=CDS|length=6552bp|location=Sequence derived from alignment at KK037253.1:382213..383901+ (Nannochloropsis gaditana)
ATGCTTCTTTCCAAGATGGGAAACCAACCACCGACTAAGGCCACACTCTC
TGGGTTAGTCACAAGAATTTGGCGCTACCCTTATAGAGCTAATGGACAAG
AGATGGAAGTCCTAATCATGTTACGGCATCATCGCCATAAGGGTGAAAAG
ATCATATATGTCGACGGGCAAATTGTTCACCACTCCATCGACCGTATTGA
TAGCGGGGGAATCGTATCCTTCGAAATTCTTCAAGGAAAAGTGCCGTGTG
AGCTCACCGTCGTTGACTACCCTGGGCTCACTTCCTACTCGCTGGTTATT
CGAGGTCGTCCATGGGCCTGCGACACAGAGCAAGCGgacggtggagaggg
aggaaggcagccAGTGGGTTTATCAGGAAATTTGTCCATAGAAAGTGTGA
CGGTAGCTTCTGTAGCTTTGTTGCCATTGGACactgaaaagggaggagat
gacagagaaaaaaggaagacgagggaggataaACTGGAAGATgaggttga
ggaagaggaggaggaaaccctACTGCAATCATCTTCTCGAGGCGTCGTCA
GGTCCGGTGGGAAAGCGAAAGTGGGAGCTTTCTACACACTGAAGACGCGG
TGGGCCGCGACGGAGGGAACCGGagccgaggaaggagagcaaggagcgaa
cgggagggcgggtcccaaggaaaaggaacaCCGGTTTCGGTTCCGAGACT
TTGACAAACTGGATGTGAAAATTCGGTCTTACTTTTGGGGACACcacctt
gcttcctccctccctcgtcttcctcccaaaTATCTGAAAGCCCTCACGGC
GCacacttccccctccttcctggaggagaggcgcGCAGCATTGGACGCCT
ACATGCAGAGACTACAGAACTTCCCATACGTCCAACGGAATCCGGATTGG
CAAGCGTTTGTACTGGGGGAGCCGGGCTTAAGATAAATGCTTCTTTCCAA
GATGGGAAACCAACCACCGACTAAGGCCACACTCTCTGGGTTAGTCACAA
GAATTTGGCGCTACCCTTATAGAGCTAATGGACAAGAGATGGAAGTCCTA
ATCATGTTACGGCATCATCGCCATAAGGGTGAAAAGATCATATATGTCGA
CGGGCAAATTGTTCACCACTCCATCGACCGTATTGATAGCGGGGGAATCG
TATCCTTCGAAATTCTTCAAGGAAAAGTGCCGTGTGAGCTCACCGTCGTT
GACTACCCTGGGCTCACTTCCTACTCGCTGGTTATTCGAGGTCGTCCATG
GGCCTGCGACACAGAGCAAGCGgacggtggagagggaggaaggcagccAG
TGGGTTTATCAGGAAATTTGTCCATAGAAAGTGTGACGGTAGCTTCTGTA
GCTTTGTTGCCATTGGACactgaaaagggaggagatgacagagaaaaaag
gaagacgagggaggataaACTGGAAGATgaggttgaggaagaggaggagg
aaaccctACTGCAATCATCTTCTCGAGGCGTCGTCAGGTCCGGTGGGAAA
GCGAAAGTGGGAGCTTTCTACACACTGAAGACGCGGTGGGCCGCGACGGA
GGGAACCGGagccgaggaaggagagcaaggagcgaacgggagggcgggtc
ccaaggaaaaggaacaCCGGTTTCGGTTCCGAGACTTTGACAAACTGGAT
GTGAAAATTCGGTCTTACTTTTGGGGACACcaccttgcttcctccctccc
tcgtcttcctcccaaaTATCTGAAAGCCCTCACGGCGCacacttccccct
ccttcctggaggagaggcgcGCAGCATTGGACGCCTACATGCAGAGACTA
CAGAACTTCCCATACGTCCAACGGAATCCGGATTGGCAAGCGTTTGTACT
GGGGGAGCCGGGCTTAAGATAAATGCTTCTTTCCAAGATGGGAAACCAAC
CACCGACTAAGGCCACACTCTCTGGGTTAGTCACAAGAATTTGGCGCTAC
CCTTATAGAGCTAATGGACAAGAGATGGAAGTCCTAATCATGTTACGGCA
TCATCGCCATAAGGGTGAAAAGATCATATATGTCGACGGGCAAATTGTTC
ACCACTCCATCGACCGTATTGATAGCGGGGGAATCGTATCCTTCGAAATT
CTTCAAGGAAAAGTGCCGTGTGAGCTCACCGTCGTTGACTACCCTGGGCT
CACTTCCTACTCGCTGGTTATTCGAGGTCGTCCATGGGCCTGCGACACAG
AGCAAGCGgacggtggagagggaggaaggcagccAGTGGGTTTATCAGGA
AATTTGTCCATAGAAAGTGTGACGGTAGCTTCTGTAGCTTTGTTGCCATT
GGACactgaaaagggaggagatgacagagaaaaaaggaagacgagggagg
ataaACTGGAAGATgaggttgaggaagaggaggaggaaaccctACTGCAA
TCATCTTCTCGAGGCGTCGTCAGGTCCGGTGGGAAAGCGAAAGTGGGAGC
TTTCTACACACTGAAGACGCGGTGGGCCGCGACGGAGGGAACCGGagccg
aggaaggagagcaaggagcgaacgggagggcgggtcccaaggaaaaggaa
caCCGGTTTCGGTTCCGAGACTTTGACAAACTGGATGTGAAAATTCGGTC
TTACTTTTGGGGACACcaccttgcttcctccctccctcgtcttcctccca
aaTATCTGAAAGCCCTCACGGCGCacacttccccctccttcctggaggag
aggcgcGCAGCATTGGACGCCTACATGCAGAGACTACAGAACTTCCCATA
CGTCCAACGGAATCCGGATTGGCAAGCGTTTGTACTGGGGGAGCCGGGCT
TAAGATAAATGCTTCTTTCCAAGATGGGAAACCAACCACCGACTAAGGCC
ACACTCTCTGGGTTAGTCACAAGAATTTGGCGCTACCCTTATAGAGCTAA
TGGACAAGAGATGGAAGTCCTAATCATGTTACGGCATCATCGCCATAAGG
GTGAAAAGATCATATATGTCGACGGGCAAATTGTTCACCACTCCATCGAC
CGTATTGATAGCGGGGGAATCGTATCCTTCGAAATTCTTCAAGGAAAAGT
GCCGTGTGAGCTCACCGTCGTTGACTACCCTGGGCTCACTTCCTACTCGC
TGGTTATTCGAGGTCGTCCATGGGCCTGCGACACAGAGCAAGCGgacggt
ggagagggaggaaggcagccAGTGGGTTTATCAGGAAATTTGTCCATAGA
AAGTGTGACGGTAGCTTCTGTAGCTTTGTTGCCATTGGACactgaaaagg
gaggagatgacagagaaaaaaggaagacgagggaggataaACTGGAAGAT
gaggttgaggaagaggaggaggaaaccctACTGCAATCATCTTCTCGAGG
CGTCGTCAGGTCCGGTGGGAAAGCGAAAGTGGGAGCTTTCTACACACTGA
AGACGCGGTGGGCCGCGACGGAGGGAACCGGagccgaggaaggagagcaa
ggagcgaacgggagggcgggtcccaaggaaaaggaacaCCGGTTTCGGTT
CCGAGACTTTGACAAACTGGATGTGAAAATTCGGTCTTACTTTTGGGGAC
ACcaccttgcttcctccctccctcgtcttcctcccaaaTATCTGAAAGCC
CTCACGGCGCacacttccccctccttcctggaggagaggcgcGCAGCATT
GGACGCCTACATGCAGAGACTACAGAACTTCCCATACGTCCAACGGAATC
CGGATTGGCAAGCGTTTGTACTGGGGGAGCCGGGCTTAAGATAAATGCTT
CTTTCCAAGATGGGAAACCAACCACCGACTAAGGCCACACTCTCTGGGTT
AGTCACAAGAATTTGGCGCTACCCTTATAGAGCTAATGGACAAGAGATGG
AAGTCCTAATCATGTTACGGCATCATCGCCATAAGGGTGAAAAGATCATA
TATGTCGACGGGCAAATTGTTCACCACTCCATCGACCGTATTGATAGCGG
GGGAATCGTATCCTTCGAAATTCTTCAAGGAAAAGTGCCGTGTGAGCTCA
CCGTCGTTGACTACCCTGGGCTCACTTCCTACTCGCTGGTTATTCGAGGT
CGTCCATGGGCCTGCGACACAGAGCAAGCGgacggtggagagggaggaag
gcagccAGTGGGTTTATCAGGAAATTTGTCCATAGAAAGTGTGACGGTAG
CTTCTGTAGCTTTGTTGCCATTGGACactgaaaagggaggagatgacaga
gaaaaaaggaagacgagggaggataaACTGGAAGATgaggttgaggaaga
ggaggaggaaaccctACTGCAATCATCTTCTCGAGGCGTCGTCAGGTCCG
GTGGGAAAGCGAAAGTGGGAGCTTTCTACACACTGAAGACGCGGTGGGCC
GCGACGGAGGGAACCGGagccgaggaaggagagcaaggagcgaacgggag
ggcgggtcccaaggaaaaggaacaCCGGTTTCGGTTCCGAGACTTTGACA
AACTGGATGTGAAAATTCGGTCTTACTTTTGGGGACACcaccttgcttcc
tccctccctcgtcttcctcccaaaTATCTGAAAGCCCTCACGGCGCacac
ttccccctccttcctggaggagaggcgcGCAGCATTGGACGCCTACATGC
AGAGACTACAGAACTTCCCATACGTCCAACGGAATCCGGATTGGCAAGCG
TTTGTACTGGGGGAGCCGGGCTTAAGATAAATGCTTCTTTCCAAGATGGG
AAACCAACCACCGACTAAGGCCACACTCTCTGGGTTAGTCACAAGAATTT
GGCGCTACCCTTATAGAGCTAATGGACAAGAGATGGAAGTCCTAATCATG
TTACGGCATCATCGCCATAAGGGTGAAAAGATCATATATGTCGACGGGCA
AATTGTTCACCACTCCATCGACCGTATTGATAGCGGGGGAATCGTATCCT
TCGAAATTCTTCAAGGAAAAGTGCCGTGTGAGCTCACCGTCGTTGACTAC
CCTGGGCTCACTTCCTACTCGCTGGTTATTCGAGGTCGTCCATGGGCCTG
CGACACAGAGCAAGCGgacggtggagagggaggaaggcagccAGTGGGTT
TATCAGGAAATTTGTCCATAGAAAGTGTGACGGTAGCTTCTGTAGCTTTG
TTGCCATTGGACactgaaaagggaggagatgacagagaaaaaaggaagac
gagggaggataaACTGGAAGATgaggttgaggaagaggaggaggaaaccc
tACTGCAATCATCTTCTCGAGGCGTCGTCAGGTCCGGTGGGAAAGCGAAA
GTGGGAGCTTTCTACACACTGAAGACGCGGTGGGCCGCGACGGAGGGAAC
CGGagccgaggaaggagagcaaggagcgaacgggagggcgggtcccaagg
aaaaggaacaCCGGTTTCGGTTCCGAGACTTTGACAAACTGGATGTGAAA
ATTCGGTCTTACTTTTGGGGACACcaccttgcttcctccctccctcgtct
tcctcccaaaTATCTGAAAGCCCTCACGGCGCacacttccccctccttcc
tggaggagaggcgcGCAGCATTGGACGCCTACATGCAGAGACTACAGAAC
TTCCCATACGTCCAACGGAATCCGGATTGGCAAGCGTTTGTACTGGGGGA
GCCGGGCTTAAGATAAATGCTTCTTTCCAAGATGGGAAACCAACCACCGA
CTAAGGCCACACTCTCTGGGTTAGTCACAAGAATTTGGCGCTACCCTTAT
AGAGCTAATGGACAAGAGATGGAAGTCCTAATCATGTTACGGCATCATCG
CCATAAGGGTGAAAAGATCATATATGTCGACGGGCAAATTGTTCACCACT
CCATCGACCGTATTGATAGCGGGGGAATCGTATCCTTCGAAATTCTTCAA
GGAAAAGTGCCGTGTGAGCTCACCGTCGTTGACTACCCTGGGCTCACTTC
CTACTCGCTGGTTATTCGAGGTCGTCCATGGGCCTGCGACACAGAGCAAG
CGgacggtggagagggaggaaggcagccAGTGGGTTTATCAGGAAATTTG
TCCATAGAAAGTGTGACGGTAGCTTCTGTAGCTTTGTTGCCATTGGACac
tgaaaagggaggagatgacagagaaaaaaggaagacgagggaggataaAC
TGGAAGATgaggttgaggaagaggaggaggaaaccctACTGCAATCATCT
TCTCGAGGCGTCGTCAGGTCCGGTGGGAAAGCGAAAGTGGGAGCTTTCTA
CACACTGAAGACGCGGTGGGCCGCGACGGAGGGAACCGGagccgaggaag
gagagcaaggagcgaacgggagggcgggtcccaaggaaaaggaacaCCGG
TTTCGGTTCCGAGACTTTGACAAACTGGATGTGAAAATTCGGTCTTACTT
TTGGGGACACcaccttgcttcctccctccctcgtcttcctcccaaaTATC
TGAAAGCCCTCACGGCGCacacttccccctccttcctggaggagaggcgc
GCAGCATTGGACGCCTACATGCAGAGACTACAGAACTTCCCATACGTCCA
ACGGAATCCGGATTGGCAAGCGTTTGTACTGGGGGAGCCGGGCTTAAGAT
AA
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Synonyms
Publications