EWM21227.1, cds9446 (CDS) Nannochloropsis gaditana

Overview
NameEWM21227.1
Unique Namecds9446
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:382213..382221 +
Alignment locationKK037253.1:382332..382447 +
Alignment locationKK037253.1:382549..382589 +
Alignment locationKK037253.1:382723..382830 +
Alignment locationKK037253.1:382937..383382 +
Alignment locationKK037253.1:383565..383711 +
Alignment locationKK037253.1:383833..383901 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21227.1
Productpx domain containing protein
Orig transcript idgnl|cribi|Naga_100507g3.10254.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:382213..382221 +
KK037253.1supercontigKK037253.1:382332..382447 +
KK037253.1supercontigKK037253.1:382549..382589 +
KK037253.1supercontigKK037253.1:382723..382830 +
KK037253.1supercontigKK037253.1:382937..383382 +
KK037253.1supercontigKK037253.1:383565..383711 +
KK037253.1supercontigKK037253.1:383833..383901 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO:0035091phosphatidylinositol binding
Vocabulary: INTERPRO
TermDefinition
IPR001683Phox
Homology
BLAST of EWM21227.1 vs. NCBI_GenBank
Match: gi|585101340|gb|EWM21227.1| (px domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0
Query:    1 MLLSKMGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTEQADGGEGGRQPVGLSGNLSIESVTVASVALLPLDTEKGGDDREKRKTREDKLEDEVEEEEEETLLQSSSRGVVRSGGKAKVGAFYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFVLGEPGLR 311
            MLLSKMGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTEQADGGEGGRQPVGLSGNLSIESVTVASVALLPLDTEKGGDDREKRKTREDKLEDEVEEEEEETLLQSSSRGVVRSGGKAKVGAFYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFVLGEPGLR
Sbjct:    1 MLLSKMGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTEQADGGEGGRQPVGLSGNLSIESVTVASVALLPLDTEKGGDDREKRKTREDKLEDEVEEEEEETLLQSSSRGVVRSGGKAKVGAFYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFVLGEPGLR 311          
BLAST of EWM21227.1 vs. NCBI_GenBank
Match: gi|553180403|ref|XP_005853399.1| (px domain containing protein [Nannochloropsis gaditana CCMP526] >gi|422295662|gb|EKU22961.1| px domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 628.632 bits (1620), Expect = 0.000e+0
Identity = 305/306 (99.67%), Postives = 305/306 (99.67%), Query Frame = 0
Query:    6 MGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTEQADGGEGGRQPVGLSGNLSIESVTVASVALLPLDTEKGGDDREKRKTREDKLEDEVEEEEEETLLQSSSRGVVRSGGKAKVGAFYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFVLGEPGLR 311
            MGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTEQADGGEGGRQPVGLS NLSIESVTVASVALLPLDTEKGGDDREKRKTREDKLEDEVEEEEEETLLQSSSRGVVRSGGKAKVGAFYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFVLGEPGLR
Sbjct:    1 MGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTEQADGGEGGRQPVGLSENLSIESVTVASVALLPLDTEKGGDDREKRKTREDKLEDEVEEEEEETLLQSSSRGVVRSGGKAKVGAFYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFVLGEPGLR 306          
BLAST of EWM21227.1 vs. NCBI_GenBank
Match: gi|553195737|ref|XP_005856197.1| (px domain containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292875|gb|EKU20177.1| px domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0
Identity = 289/290 (99.66%), Postives = 289/290 (99.66%), Query Frame = 0
Query:    6 MGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTEQADGGEGGRQPVGLSGNLSIESVTVASVALLPLDTEKGGDDREKRKTREDKLEDEVEEEEEETLLQSSSRGVVRSGGKAKVGAFYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQ 295
            MGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTEQADGGEGGRQPVGLS NLSIESVTVASVALLPLDTEKGGDDREKRKTREDKLEDEVEEEEEETLLQSSSRGVVRSGGKAKVGAFYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQ
Sbjct:    1 MGNQPPTKATLSGLVTRIWRYPYRANGQEMEVLIMLRHHRHKGEKIIYVDGQIVHHSIDRIDSGGIVSFEILQGKVPCELTVVDYPGLTSYSLVIRGRPWACDTEQADGGEGGRQPVGLSENLSIESVTVASVALLPLDTEKGGDDREKRKTREDKLEDEVEEEEEETLLQSSSRGVVRSGGKAKVGAFYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQ 290          
BLAST of EWM21227.1 vs. NCBI_GenBank
Match: gi|676389975|ref|XP_009038266.1| (hypothetical protein AURANDRAFT_71905 [Aureococcus anophagefferens] >gi|323451151|gb|EGB07029.1| hypothetical protein AURANDRAFT_71905 [Aureococcus anophagefferens])

HSP 1 Score: 68.1662 bits (165), Expect = 4.816e-9
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 0
Query:  207 TGAEEGEQGANGRAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFV 304
            T A +G++ A  R       HR RFRDF  LD  I     GHH+ +S+PRLP K LK    H   +FLE RR  LD Y+ +L + P+V   P    FV
Sbjct:  148 THASKGDEVATTRV------HR-RFRDFADLDEAITGALAGHHVRNSVPRLPLKKLKLFQDHNDAAFLEARRRDLDGYVAKLVHVPHVWATPPAAPFV 238          
BLAST of EWM21227.1 vs. NCBI_GenBank
Match: gi|299116611|emb|CBN76238.1| (PX domain containing protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 67.0106 bits (162), Expect = 6.802e-9
Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 0
Query:  227 HRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFV 304
            HR RFRDF  L  ++ S   GHHL SSLPR P K  K  T H   SF+EERR AL+ Y++ L   P+V      +AF+
Sbjct:   85 HR-RFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFL 161          
BLAST of EWM21227.1 vs. NCBI_GenBank
Match: gi|694541252|ref|XP_009496991.1| (hypothetical protein H696_04851 [Fonticula alba] >gi|627946565|gb|KCV68559.1| hypothetical protein H696_04851 [Fonticula alba])

HSP 1 Score: 62.003 bits (149), Expect = 1.927e-8
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 0
Query:  230 RFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFVLGEP 308
            RF +F  L  ++R  + G+HLAS++P  PPK+ K +  H    F++ER+  L+ YMQ L   P +++ P +  F+ G P
Sbjct:   43 RFSEFVTLHNEVRKAYKGNHLASNIPVFPPKHPKFMIDHMDDHFVDERKFNLERYMQLLSRLPKIEQVPMYVDFLEGRP 121          
The following BLAST results are available for this feature:
BLAST of EWM21227.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585101340|gb|EWM21227.1|0.000e+0100.00px domain containing protein [Nannochloropsis gadi... [more]
gi|553180403|ref|XP_005853399.1|0.000e+099.67px domain containing protein [Nannochloropsis gadi... [more]
gi|553195737|ref|XP_005856197.1|0.000e+099.66px domain containing protein, partial [Nannochloro... [more]
gi|676389975|ref|XP_009038266.1|4.816e-941.84hypothetical protein AURANDRAFT_71905 [Aureococcus... [more]
gi|299116611|emb|CBN76238.1|6.802e-947.44PX domain containing protein (Partial), partial [E... [more]
gi|694541252|ref|XP_009496991.1|1.927e-836.71hypothetical protein H696_04851 [Fonticula alba] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9477rna9477Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications