rna9454, rna9454 (mRNA) Nannochloropsis gaditana

Overview
Namerna9454
Unique Namerna9454
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2125
Alignment locationKK037253.1:331418..333033 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100609g1.7580.mrna
Orig protein idgnl|cribi|Naga_100609g1.7580
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:331418..333033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100609g1gene9175Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9454rna9454-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21250.1cds9424Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9454 ID=rna9454|Name=rna9454|organism=Nannochloropsis gaditana|type=mRNA|length=2125bp
CCCTCCCTCCCTCAGGACGTACAACTCCGCTGCTCCCTGCAAGACCAGGC
CTTACGAGGGACCCCTGACCTGGAGACGCTGGCTGCGCGGCTACTTCGGC
AACGCGCAGGGCTCATCGACATCTATAAGGTCTACACCTTCGCACAACGT
CTGCCCCTTTTCCTAGGGGCCCTCGAAGAGACCAGTCAGGACGAAGGTCA
CCCCTCCGCCCCCCTCCAGAAGCGTTTCTCCCGGGACTTATGCCGGATCC
AGGAGCACTTTCAGAAGTTTTCCGCCCTGGTCGAATGCGTGATTGACATG
TCTACCCTCCCCGATCTCAGCATCAGTCCCGCCCACGACCCTGCTTTGGC
TGAACTCAAGGAGGAGATCGACGAGGTGGAAGACCACATCGAAAACGTAT
TCAAAAAAGCTACCCGGGGATTCGCCCAAGACTTGGGGATAGAGCTCCGT
CTAGAGTTGCAGAAAACGACTGGCACCTATTGTTTTCGGTCCACAAAACC
GGCGGATGACAAAAAGCTGCGCGCCTGCAAGACGGTCAAGTGCGAGATCC
TTTCCATCCTCAAGAACGGCGTCTACTTTACCACCGCTCCCTTGAAGGAG
GCGTCGGGCCGTTTTCTGGACCTGAAGGCAGAAGTGCGCTCCCCTCCCTC
CCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCTTTCCC
CTTCTTTGTCCACTCTTCCCTCTGGTTCTTCCTGGCAAGCCCCCCTTTTC
AACTGCCTTCCTTTCCTCTACCTCCTTGTCACCTCGGTCCAGTACTCCCA
CAAGCAGAGCAGCCTGGTCAAGAAAGCGGTGGAGACCGCTTGCACGTATT
TGCCCCTGATCGAAGCCGCTGCCCGCCTAGTCGCAGAACTGGACGTGCTT
GTCTCCCTGGGCCACGTCGCAGCCATGGCTCCCTCCGGCTACCGCAGGCC
CGTCCTTTTCGGGAAGGGGGGGGGACAAGGCATCATGGTCAAGGGCGGAA
GGCACCCTTGTTTAGAGCTCCAAGAGAGCGTGGAGTTCATTCCCAACGAC
TACGTTTTAACCCGAGGGGAGAGTCATTTCACCCTCTTGACCGGTCCCAA
CATGGGCGGGAAGAGCACCTATATCCGGGGCCTCGGGTGCCTGTGCGTGA
TGGCTCAGATTGGGTCCTACGTACCCGTCGATGCCATGGAGCTGCCCGTT
GTGGACGCCGTGTTGGCGCGGGTTGGGGCAGGAGACGCAGCACAGCGGGG
TGTCAGCACCTTCATGGCCGAAATGCTGGAGGCCTCCACGATTCTTCAGA
CCGCGACGCCACATTCGTTGCTGATCATTGATGAGTTGGGCCGTGGGACC
AGCACCTTCGATGGCTTTGGCCTCGCCTGGGCAATATCTGAGTATATCAT
CCGGCATCTCCAAGCGCCCTGCCTCTTCGCCACCCACTTCCACGAACTCA
CCGCCCTGGAGCAAAAGGCCCCCGGCGTGCGAAACTTGCACGTCTCGGCC
TTAGCTGGTGCTGACAAGATTACCATGCTCTATCAGGTGGAGCCAGGACC
GTGCTTGGAGTCGTACGGCATCCACGTGGCGCGCATGGCTCGCTTTCCCG
CCAGTGTGATCGAGGAAGCAAGCGTTAAAGCCAAGGAGTTAGAGTCTCTG
GATAGCAAAGGGAACTGTACCTCCTCCTCGTTTGCTTCTTCCTCTTCCCC
GCTCAAGAAACCGCGCTTTTCCCTCTCAACTTCTCTTTCCGATGCAGCAC
AAAATGTCCTGGGACGCTCAGAAGGGAATGAAGTTGCCTTATCGGCCCTC
AAGGGGCTGGGGCGCACTTTTGCGGAGCTTCCCATCGATACCCTTGTTGA
TGCAGCAGTAGTTGTACAGAGAATGGAAGACATGGTTGAAAGTGTTCGAA
TGAAGGTCTCGCAGTAGAAGATTGGGAAGTAAAAGAACGAAAAAGACTAT
GATGTCGTAGAGCCGAGAAGGCAGTCACGAGTGCCGGAAGGATGGGGCCG
TGTTGTACGAATGATCATTGCCTTGTCCACAGGAAATGAACGAAATGATT
CTCGACATCTTGACATGCTTGCCAATGTCGCAGTCGTGCGCTACAGGCTC
CTCGTATTGTCAGATGCCGCCTTTA
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protein sequence of rna9454

>rna9454-protein ID=rna9454-protein|Name=rna9454|organism=Nannochloropsis gaditana|type=polypeptide|length=292bp
MKDTELPDTEQLGRDAHPRTSLSHLRIAYALMLVLSLASMWKMGSRRELL
VGTEITASIPPIERNKSLFYVTTHLSPSHYEFFQKCWPSLIAKSQLYKES
DFLIFATGSNASNIDWSVLNATFANATYAVQVMDNPGYQEGAMLALTEAF
SKHWFDGYEWVIRVNPDVLIRNDTFLRKSMQDSSIKGIFADCLETPCATG
TNCTNRLIHTDFFAIRPEAVSEQAVLEARSKQTNAERMATQAFSSIVLAG
ADSWVPNVGPLGLQCRVGGVASPVMHTHNQRQVHPQCLSWYD
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mRNA from alignment at KK037253.1:331418..333033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9454 ID=rna9454|Name=rna9454|organism=Nannochloropsis gaditana|type=mRNA|length=1616bp|location=Sequence derived from alignment at KK037253.1:331418..333033+ (Nannochloropsis gaditana)
TCTAACAGGAGCTTTTCTTAGTATGGTCGCAAAGGACACAAAAACCGTAG
TCCATCAGTCAAATATGTACAAAACCCCAATCCGTCTACCATGAAGGACA
CAGAGCTGCCGGATACGGAGCAGCTTGGCAGGGATGCTCACCCACGTACA
TCCCTGTCACATCTCAGGATAGCTTACGCCCTGATGCTGGTACTTTCACT
CGCGTCGATGTGGAAGATGGGGAGCCGGCGCGAGCTCCTTGTGGGAACGG
AGATCACAGCATCCATCCCACCGATCGAGCGCAACAAGAGTCTCTTTTAC
GTCACCACCCATCTTTCTCCGTCACACTACGAGTTTTTCCAGAAATGCTG
GCCGTCTCTCATTGCTAAGAGCCAATTATACAAGGAATCAGACTTTTTGA
TTTTCGCCACTGGATCGAATGCCAGCAATATCGATTGGAGCGTACTAAAT
GCTACCTTTGCCAACGCGACATACGCCGTGCAAGTCATGGATAATCCTGG
ATACCAAGAAGGAGCCATGTTGGCGTTGACCGAGGCATTCAGTAAGCACT
GGTTCGATGGTTACGAGTGGGTGATACGTGTCAATCCCGACGTGCTGATC
CGGAACGATACGTTTTTGCGGAAGAGTATGCAAGACTCGAGCATCAAGGG
GATTTTTGCGGACTGTTTGGAAACGCCTTGTGCAACCGGCACAAACTGCA
CGAATAGACTGATCCATACGGATTTCTTTGCGATCCGACCCGAAGCTGTC
TCTGAGCAAGCTGTTTTGGAAGCAAGATCGAAGCAAACGAATGCCGAACG
AATGGCTACTCAAGCCTTTTCCAGCATAGTGCTCGCCGGGGCTGATAGCT
GGGTTCCGAACGTAGGACCCCTTGGTTTGCAGTGTCGTGTCGGAGGTGTG
GCTTCTCCAGTGATGCACACTCACAATCAACGGCAAGTTCATCCCCAATG
CCTGTCTTGGTATGACTAGCCATTGAGTGGTCTCCAGTCAGAGTCTGACG
AATTGAGTATCATGTGCCAGGTTTGGTCGACTGAGGACAGCATCACCTCA
CAAAATGGTGCGAGGGTCTGTCTGTATAATCGCCGGGCGCAGCCATGGGT
TTGTGAGCTGTCATCCCGGCTGAAGCAGCGGATGAGAATGGAGAGATGGA
AAACGAGTAGACTACAAGAGCTTGTAGGGCTTTGGTTTGTGCGAGGGATA
TGTTTTGACGATGGTTACCCAATAGTTTTGTGACAAGCACATACGTATAT
ACCTATATACTTctatatacatatatatagGTATATGTATAAAAAGGTAT
ATTGCTATGACGCTGCTGTAGCGGTAAGCATATGATAGCAAAGTCGTTGA
TGATTTCATTGGAAAAAATACGGAAAACAGAAAATCCAAGACGTTGGTTC
CTCTGCTTCACCAGTCTGCAAGCTTACAAGTTGCTTTCGTGATCAAGTTT
CACAATTGCGTTGAAAACTACTCGAGAGCCACCAACATAAAGAATGCAAT
CCCTGCATGTGGATAGCCAAAGCCTGTGTAGAGGTAAGAAGTCACCTTTT
GCCAGTCTTTGGGCCCGCACACGGATCTGTGGCTTCTCGGACACAAGGTG
CATGCGCCCgtattcc
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Coding sequence (CDS) from alignment at KK037253.1:331418..333033+

>rna9454 ID=rna9454|Name=rna9454|organism=Nannochloropsis gaditana|type=CDS|length=879bp|location=Sequence derived from alignment at KK037253.1:331418..333033+ (Nannochloropsis gaditana)
ATGAAGGACACAGAGCTGCCGGATACGGAGCAGCTTGGCAGGGATGCTCA
CCCACGTACATCCCTGTCACATCTCAGGATAGCTTACGCCCTGATGCTGG
TACTTTCACTCGCGTCGATGTGGAAGATGGGGAGCCGGCGCGAGCTCCTT
GTGGGAACGGAGATCACAGCATCCATCCCACCGATCGAGCGCAACAAGAG
TCTCTTTTACGTCACCACCCATCTTTCTCCGTCACACTACGAGTTTTTCC
AGAAATGCTGGCCGTCTCTCATTGCTAAGAGCCAATTATACAAGGAATCA
GACTTTTTGATTTTCGCCACTGGATCGAATGCCAGCAATATCGATTGGAG
CGTACTAAATGCTACCTTTGCCAACGCGACATACGCCGTGCAAGTCATGG
ATAATCCTGGATACCAAGAAGGAGCCATGTTGGCGTTGACCGAGGCATTC
AGTAAGCACTGGTTCGATGGTTACGAGTGGGTGATACGTGTCAATCCCGA
CGTGCTGATCCGGAACGATACGTTTTTGCGGAAGAGTATGCAAGACTCGA
GCATCAAGGGGATTTTTGCGGACTGTTTGGAAACGCCTTGTGCAACCGGC
ACAAACTGCACGAATAGACTGATCCATACGGATTTCTTTGCGATCCGACC
CGAAGCTGTCTCTGAGCAAGCTGTTTTGGAAGCAAGATCGAAGCAAACGA
ATGCCGAACGAATGGCTACTCAAGCCTTTTCCAGCATAGTGCTCGCCGGG
GCTGATAGCTGGGTTCCGAACGTAGGACCCCTTGGTTTGCAGTGTCGTGT
CGGAGGTGTGGCTTCTCCAGTGATGCACACTCACAATCAACGGCAAGTTC
ATCCCCAATGCCTGTCTTGGTATGACTAG
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Synonyms
Publications