EWM21250.1, cds9424 (CDS) Nannochloropsis gaditana

Overview
NameEWM21250.1
Unique Namecds9424
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:331508..332386 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21250.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100609g1.7580.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:331508..332386 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21250.1 vs. NCBI_GenBank
Match: gi|585101383|gb|EWM21250.1| (hypothetical protein Naga_100609g1 [Nannochloropsis gaditana])

HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
Query:    1 MKDTELPDTEQLGRDAHPRTSLSHLRIAYALMLVLSLASMWKMGSRRELLVGTEITASIPPIERNKSLFYVTTHLSPSHYEFFQKCWPSLIAKSQLYKESDFLIFATGSNASNIDWSVLNATFANATYAVQVMDNPGYQEGAMLALTEAFSKHWFDGYEWVIRVNPDVLIRNDTFLRKSMQDSSIKGIFADCLETPCATGTNCTNRLIHTDFFAIRPEAVSEQAVLEARSKQTNAERMATQAFSSIVLAGADSWVPNVGPLGLQCRVGGVASPVMHTHNQRQVHPQCLSWYD 292
            MKDTELPDTEQLGRDAHPRTSLSHLRIAYALMLVLSLASMWKMGSRRELLVGTEITASIPPIERNKSLFYVTTHLSPSHYEFFQKCWPSLIAKSQLYKESDFLIFATGSNASNIDWSVLNATFANATYAVQVMDNPGYQEGAMLALTEAFSKHWFDGYEWVIRVNPDVLIRNDTFLRKSMQDSSIKGIFADCLETPCATGTNCTNRLIHTDFFAIRPEAVSEQAVLEARSKQTNAERMATQAFSSIVLAGADSWVPNVGPLGLQCRVGGVASPVMHTHNQRQVHPQCLSWYD
Sbjct:    1 MKDTELPDTEQLGRDAHPRTSLSHLRIAYALMLVLSLASMWKMGSRRELLVGTEITASIPPIERNKSLFYVTTHLSPSHYEFFQKCWPSLIAKSQLYKESDFLIFATGSNASNIDWSVLNATFANATYAVQVMDNPGYQEGAMLALTEAFSKHWFDGYEWVIRVNPDVLIRNDTFLRKSMQDSSIKGIFADCLETPCATGTNCTNRLIHTDFFAIRPEAVSEQAVLEARSKQTNAERMATQAFSSIVLAGADSWVPNVGPLGLQCRVGGVASPVMHTHNQRQVHPQCLSWYD 292          
BLAST of EWM21250.1 vs. NCBI_GenBank
Match: gi|585099894|gb|EWM20359.1| (hypothetical protein Naga_100877g2 [Nannochloropsis gaditana])

HSP 1 Score: 364.385 bits (934), Expect = 7.144e-124
Identity = 168/268 (62.69%), Postives = 208/268 (77.61%), Query Frame = 0
Query:   25 LRIAYALMLVLSLASMWKMGSRRELLVGTEITASIPPIERNKSLFYVTTHLSPSHYEFFQKCWPSLIAKSQLYKESDFLIFATGSNASNIDWSVLNATFANATYAVQVMDNPGYQEGAMLALTEAFSKHWFDGYEWVIRVNPDVLIRNDTFLRKSMQDSSIKGIFADCLETPCATGTNCTNRLIHTDFFAIRPEAVSEQAVLEARSKQTNAERMATQAFSSIVLAGADSWVPNVGPLGLQCRVGGVASPVMHTHNQRQVHPQCLSWYD 292
            L+I   ++L+ SL  +  +  R+ ++   E T+SI  +ERNKSLFYVTTHLSPSHY++ +KCWPSL+AKSQ Y++SDF+IF T SN S IDW+V+NATFA     V V+DNPGYQEGAMLA+TEA+  HWFDGYEWVIRVNPDVLIRNDTFL + M+D  I+GIFADCL+ PC TG NC++RLIHTDFFAIRP+AVS +A+L+A  K+  AE MA +AFSSIV  G DSWVPN GP    CR+ G  SPV+H H + + +PQCLSWYD
Sbjct:   27 LKILIVMLLLASLTPLHDVMMRQLVM---ETTSSIHMVERNKSLFYVTTHLSPSHYQYLEKCWPSLLAKSQAYRQSDFVIFITKSNGSMIDWNVINATFAGTKVTVHVVDNPGYQEGAMLAMTEAYRNHWFDGYEWVIRVNPDVLIRNDTFLLEGMRDPGIEGIFADCLDKPCPTGKNCSDRLIHTDFFAIRPDAVSLEAILDADEKEPGAEPMARRAFSSIVWNGRDSWVPNAGPHMGHCRIAGAMSPVIHPHEESEGYPQCLSWYD 291          
BLAST of EWM21250.1 vs. NCBI_GenBank
Match: gi|585110853|gb|EWM28451.1| (hypothetical protein Naga_100627g3 [Nannochloropsis gaditana])

HSP 1 Score: 307.76 bits (787), Expect = 1.385e-101
Identity = 143/243 (58.85%), Postives = 178/243 (73.25%), Query Frame = 0
Query:   50 LVGTEITASIPPIERNKSLFYVTTHLSPSHYEFFQKCWPSLIAKSQLYKESDFLIFATGSNASNIDWSVLNATFANATYAVQVMDNPGYQEGAMLALTEAFSKHWFDGYEWVIRVNPDVLIRNDTFLRKSMQDSSIKGIFADCLETPCATGTNCTNRLIHTDFFAIRPEAVSEQAVLEARSKQTNAERMATQAFSSIVLAGADSWVPNVGPLGLQCRVGGVASPVMHTHNQRQVHPQCLSWYD 292
            L+ +  T +IP  +R KSL +VTTHLS +HY FF+KCWPSL+AK  +Y++SDFL+  T S  +  +W  LNATFAN  Y  QV+ NPGY +GA+LALT+ +  +WFD YEWVIRVNPDVLIRND+FL + M D+ I+G+FADC    C TG +C++  IHTDFFAIRPEAVS Q V+EA   + +AE MATQAFS IV AG DSWVP  GP    CR+ G ASPV+HT+  R V+P CLSWYD
Sbjct:   42 LMASLNTVNIP--QRKKSLIFVTTHLSETHYTFFEKCWPSLLAKGDIYRQSDFLVLITLSEGTEPNWEFLNATFANTNYTAQVVKNPGYHQGAVLALTKGYLNNWFDDYEWVIRVNPDVLIRNDSFLFERMDDAKIQGVFADCFNRDCPTGNHCSSAKIHTDFFAIRPEAVSLQDVMEANKAKIHAELMATQAFSGIVNAGTDSWVPGAGPHNGNCRIRGEASPVIHTNVIRNVYPACLSWYD 282          
BLAST of EWM21250.1 vs. NCBI_GenBank
Match: gi|1129203241|gb|OLQ05908.1| (hypothetical protein AK812_SmicGene10863 [Symbiodinium microadriaticum])

HSP 1 Score: 127.872 bits (320), Expect = 1.053e-31
Identity = 76/214 (35.51%), Postives = 117/214 (54.67%), Query Frame = 0
Query:   70 YVTTHLSPSHYEFFQKCWPSLIAKSQLYKESDFLIFATGSNASNIDWSVLNATFANATYAVQVMDNPGYQEGAMLALTEAFS-----KHWFDGYEWVIRVNPDVLIRNDTFLRKSMQDSSIKGIFADCLETPCATGTNCTNRLIHTDFFAIRPEAVSEQAVLEARSKQTNAERMATQAFSSIVLAGADSWVPNVGPLGLQCRVGGVASPVMHTH 278
            ++TTH S  H ++   CW   +    L +++D +++ +G    NI  S L A F      V+   NPG+QEGA+ A+ + F      + WF+GY+WVIR+NPDVLI +D +L ++M D+S+ GIF  C+            R +HTDFFA+RP+A+    V       T+AE+    A  SI+ +   +W+ N       C + GV SPV+H+H
Sbjct:   46 FMTTHWSDHHKQYL-PCWERAVQHLSLLQDADLILYTSG----NISSSEL-ARFHFRNITVRKYINPGWQEGAVQAVQDGFGAKGYQEKWFEGYDWVIRLNPDVLIMDDKWLLETMGDASVDGIFGQCM-----------GRQLHTDFFAVRPQAMDHTIV--DGCPPTSAEKHFQCAAKSILESNRYAWIKNYK--NAVCHIVGVNSPVVHSH 238          
BLAST of EWM21250.1 vs. NCBI_GenBank
Match: gi|1129184889|gb|OLP91373.1| (hypothetical protein AK812_SmicGene26930 [Symbiodinium microadriaticum])

HSP 1 Score: 123.25 bits (308), Expect = 7.385e-28
Identity = 75/217 (34.56%), Postives = 117/217 (53.92%), Query Frame = 0
Query:   70 YVTTHLSPSHYEFFQKCWPSLIAKSQLYKESDFLIFATGSNASNIDWSVLNATFANATYAVQVMDNPGYQEGAMLALTEAF-----SKHWFDGYEWVIRVNPDVLIRNDTFLRKSMQDSSIKGIFADCLETPCATGTNCTNRLIHTDFFAIRPEAVSEQAVLEARSKQTNAERMATQAFSSIV--LAGADSWVPNVGPLGLQCRVGGVASPVMHTHN 279
            ++TTH S  H  F   CW + + +  L + +D +++ T +N SN D   L   F N  + V+     G+Q GAM A+ +AF     ++ WFDGY+WV+R+NPDVLI +D +LR++M+++S+ GIF +           C    IHTDFFA+RP+AV        R +   A R A + F  +V  +  +  +    G    QC + G +SP++H H 
Sbjct:   52 FMTTHWSKQHQSFL-PCWQTAVQQLPLLQNADLILY-TSANLSNTDLEPLR--FRN--FFVKHCGARGHQNGAMQAVIDAFGPKGHTEKWFDGYDWVVRLNPDVLILHDQWLRETMENASVDGIFGE-----------CKGGQIHTDFFAVRPQAVD-----YTRIEVCQAWRHAEEHFRCVVQSILKSRRYQMVKGGQSTQCHIVGASSPLVHNHK 246          
BLAST of EWM21250.1 vs. NCBI_GenBank
Match: gi|357290923|gb|AET73523.1| (hypothetical protein EMVG_00237 [Emiliania huxleyi virus PS401])

HSP 1 Score: 86.2705 bits (212), Expect = 5.616e-16
Identity = 62/234 (26.50%), Postives = 102/234 (43.59%), Query Frame = 0
Query:   68 LFYVTTHLSPSHYEFFQKCWPSLIAKSQLYKESDFLIFATGSNASNIDWSVLNATFANAT---YAVQVMDNPGYQEGAMLALTEAFSKHWFDGYEWVIRVNPDVLIRNDTFLRKSMQDSSIKGIFADC-------------------LETPCATGTNCTNRLIHTDFFAIRPEAVSEQAVLEARSKQTNAERMATQAFSSIVLAGADSWVPNVGPLGLQCRVGGVASPVMHTHN 279
            L YVTTHL   H +F + CWP +  +   +      + A  S   ++D +  N T        + +  ++  G QEGA+ A+ +A ++  F GY+WV+R+NPDV++ +   LR   ++  +  + + C                   +  P    + CT+RL  +DF+A R         L        AE   T+ F   V  G D W+ +   +  +CR+    S V H HN
Sbjct:   59 LLYVTTHLPHVHVQFLRLCWPRVFLEFTRFA----FVHAHISVTRHVDANRSNQTRLPPLAFPHTLSEINISGKQEGAIQAMYDASARRLFAGYDWVVRLNPDVIVLDPMELRGLFRNRGVDVVLSSCGIRNRYYGWKWVKKMTGVSMPRPDVCTSRCTHRLAMSDFYAFR-----GSLNLSKTPSAGIAEDDVTELFKPFVAVGRDIWLCSYSYVVSKCRIA--TSSVRHMHN 281          
BLAST of EWM21250.1 vs. NCBI_GenBank
Match: gi|551599374|ref|XP_005781532.1| (hypothetical protein EMIHUDRAFT_253973, partial [Emiliania huxleyi CCMP1516] >gi|485634321|gb|EOD29103.1| hypothetical protein EMIHUDRAFT_253973, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 71.633 bits (174), Expect = 1.659e-10
Identity = 67/259 (25.87%), Postives = 102/259 (39.38%), Query Frame = 0
Query:   56 TASIPPIERNKSLFYVTTHLSPSHYEFFQKCWPSLIAKSQLYKESDFLIF------------ATGSNASNI------DWSVLNATFANATYAVQVMD-NPGYQEGAMLALTEAFSKHWFDGYEWVIRVNPDVLIRNDTFLRKSMQD--SSIKGIFADCLETPCATGTNCTNRLIHTDFFAIRPEAVSEQAVLEARSKQTNAERMATQAFSSIVL------AGADSWVPNVGPLGLQCRVGGVASPVMHTHN--QRQVHP 285
             AS PP      L ++TT  +  H  + Q CWP  +  ++L   +D L++            A G   + I       W        N   ++     NPG+Q GA+  L  A  + W  GYEWV+R NPDVL  +   L   M D  SS+         +     +  T   ++TD  A R +A++       RS +    R   +A +++ L       GA  W     P   + +  G    V H+H   +R V P
Sbjct:    3 AASAPPA---TVLVFLTTACAKCHLVYLQSCWPRALGATRLLAAADVLLYVGCLASDRTRFKAPGDGETQIAEPRASPWVDALRRLPNRNVSLAWTRWNPGHQAGAIAPLLVAAREAWLGGYEWVVRANPDVLFLDPAPLAARMADARSSLVAWVCRLPNSYPKWSSIPTEYFLNTDVLAARVDAINHSGWRGGRSSRPEFVRDIAEARTTLALDAATRSGGATLWAAGSQPNLCRAQSHG----VFHSHQACRRSVQP 254          
BLAST of EWM21250.1 vs. NCBI_GenBank
Match: gi|551625753|ref|XP_005792983.1| (hypothetical protein EMIHUDRAFT_222663 [Emiliania huxleyi CCMP1516] >gi|485647392|gb|EOD40554.1| hypothetical protein EMIHUDRAFT_222663 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 70.8626 bits (172), Expect = 4.585e-10
Identity = 67/259 (25.87%), Postives = 102/259 (39.38%), Query Frame = 0
Query:   56 TASIPPIERNKSLFYVTTHLSPSHYEFFQKCWPSLIAKSQLYKESDFLIF------------ATGSNASNI------DWSVLNATFANATYAVQVMD-NPGYQEGAMLALTEAFSKHWFDGYEWVIRVNPDVLIRNDTFLRKSMQD--SSIKGIFADCLETPCATGTNCTNRLIHTDFFAIRPEAVSEQAVLEARSKQTNAERMATQAFSSIVL------AGADSWVPNVGPLGLQCRVGGVASPVMHTHN--QRQVHP 285
             AS PP      L ++TT  +  H  + Q CWP  +  ++L   +D L++            A G   + I       W        N   ++     NPG+Q GA+  L  A  + W  GYEWV+R NPDVL  +   L   M D  SS+         +     +  T   ++TD  A R +A++       RS +    R   +A +++ L       GA  W     P   + +  G    V H+H   +R V P
Sbjct:  111 AASAPPA---TVLVFLTTACAKCHLVYLQSCWPRALGATRLLAAADVLLYVGCLASDRTRFKAPGDGETQIAEPRASPWVDALRRLPNRNVSLAWTRWNPGHQAGAIAPLLVAAREAWLGGYEWVVRANPDVLFLDPAPLAARMADARSSLVAWVCRLPNSYPKWSSIPTEYFLNTDVLAARVDAINHSGWRGGRSSRPEFVRDIAEARTTLALDAATRSGGATLWAAGSQPNLCRAQSHG----VFHSHQACRRSVQP 362          
BLAST of EWM21250.1 vs. NCBI_GenBank
Match: gi|1129203246|gb|OLQ05913.1| (hypothetical protein AK812_SmicGene10844 [Symbiodinium microadriaticum])

HSP 1 Score: 60.8474 bits (146), Expect = 7.886e-8
Identity = 35/105 (33.33%), Postives = 56/105 (53.33%), Query Frame = 0
Query:   69 FYVTTHLSPSHYEFFQKCWPSLIAKSQLYKESDFLIFATGSNASNIDWSVLNATFANATYAVQVMDNPGYQEGAMLALTEAFS-----KHWFDGYEWVIRVNPDV 168
             ++TTH S  H +F   CW +   +  L + +D +++ +G N  + D   L   F N T  ++      Y+EGA+ A  +AF      + WFD Y+WV+R+NPDV
Sbjct:   55 IFMTTHWSTLHQQFM-PCWETARQQLSLVRNADLILYTSG-NIGSKDLEKLG--FGNLT--IKHYKQAKYEEGAIQATIDAFGSKGQQEKWFDRYDWVVRLNPDV 153          
The following BLAST results are available for this feature:
BLAST of EWM21250.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585101383|gb|EWM21250.1|0.000e+0100.00hypothetical protein Naga_100609g1 [Nannochloropsi... [more]
gi|585099894|gb|EWM20359.1|7.144e-12462.69hypothetical protein Naga_100877g2 [Nannochloropsi... [more]
gi|585110853|gb|EWM28451.1|1.385e-10158.85hypothetical protein Naga_100627g3 [Nannochloropsi... [more]
gi|1129203241|gb|OLQ05908.1|1.053e-3135.51hypothetical protein AK812_SmicGene10863 [Symbiodi... [more]
gi|1129184889|gb|OLP91373.1|7.385e-2834.56hypothetical protein AK812_SmicGene26930 [Symbiodi... [more]
gi|357290923|gb|AET73523.1|5.616e-1626.50hypothetical protein EMVG_00237 [Emiliania huxleyi... [more]
gi|551599374|ref|XP_005781532.1|1.659e-1025.87hypothetical protein EMIHUDRAFT_253973, partial [E... [more]
gi|551625753|ref|XP_005792983.1|4.585e-1025.87hypothetical protein EMIHUDRAFT_222663 [Emiliania ... [more]
gi|1129203246|gb|OLQ05913.1|7.886e-833.33hypothetical protein AK812_SmicGene10844 [Symbiodi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9454rna9454Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications