EWM21252.1, cds9422 (CDS) Nannochloropsis gaditana

Overview
NameEWM21252.1
Unique Namecds9422
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:324844..324897 +
Alignment locationKK037253.1:324978..325136 +
Alignment locationKK037253.1:325318..325464 +
Alignment locationKK037253.1:325745..326017 +

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Properties
Property NameValue
Protein idEWM21252.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101184g2.2343.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:324844..324897 +
KK037253.1supercontigKK037253.1:324978..325136 +
KK037253.1supercontigKK037253.1:325318..325464 +
KK037253.1supercontigKK037253.1:325745..326017 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0000166nucleotide binding
Homology
[Close]
BLAST of EWM21252.1 vs. NCBI_GenBank
Match: gi|585101387|gb|EWM21252.1| (hypothetical protein Naga_101184g2 [Nannochloropsis gaditana])

HSP 1 Score: 433.721 bits (1114), Expect = 7.353e-154
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 
Query:    1 MARDEEEGMLLAPCVALQVTRQGLDRATSAAVLAPFHGREESNEAEGEGGRAKQTSTRWHLTIFQVPENDQLSCLDSMLVQTGPAHAYFPCEPSSKKKETGGSKAEKGDQRKLQHILERQGIDASPLPQKGSAFRPPPEDFESNLLPRLLTPQSRDLLQYKKELDYTQAMACVHALVTALDLRDGAMEGTGGGWKGRTRGVTKKHGEQEE 210
            MARDEEEGMLLAPCVALQVTRQGLDRATSAAVLAPFHGREESNEAEGEGGRAKQTSTRWHLTIFQVPENDQLSCLDSMLVQTGPAHAYFPCEPSSKKKETGGSKAEKGDQRKLQHILERQGIDASPLPQKGSAFRPPPEDFESNLLPRLLTPQSRDLLQYKKELDYTQAMACVHALVTALDLRDGAMEGTGGGWKGRTRGVTKKHGEQEE
Sbjct:    1 MARDEEEGMLLAPCVALQVTRQGLDRATSAAVLAPFHGREESNEAEGEGGRAKQTSTRWHLTIFQVPENDQLSCLDSMLVQTGPAHAYFPCEPSSKKKETGGSKAEKGDQRKLQHILERQGIDASPLPQKGSAFRPPPEDFESNLLPRLLTPQSRDLLQYKKELDYTQAMACVHALVTALDLRDGAMEGTGGGWKGRTRGVTKKHGEQEE 210
[Close]
BLAST of EWM21252.1 vs. NCBI_GenBank
Match: gi|553195723|ref|XP_005856191.1| (dna mismatch repair protein msh2, partial [Nannochloropsis gaditana CCMP526] >gi|422292869|gb|EKU20171.1| dna mismatch repair protein msh2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 381.333 bits (978), Expect = 9.018e-133
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 
Query:    1 MARDEEEGMLLAPCVALQVTRQGLDRATSAAVLAPFHGREESNEAEGEGGRAKQTSTRWHLTIFQVPENDQLSCLDSMLVQTGPAHAYFPCEPSSKKKETGGSKAEKGDQRKLQHILERQGIDASPLPQKGSAFRPPPEDFESNLLPRLLTPQSRDLLQYKKELDYTQAMACVHALVTALDLRD 184
            MARDEEEGMLLAPCVALQVTRQGLDRATSAAVLAPFHGREESNEAEGEGGRAKQTSTRWHLTIFQVPENDQLSCLDSMLVQTGPAHAYFPCEPSSKKKETGGSKAEKGDQRKLQHILERQGIDASPLPQKGSAFRPPPEDFESNLLPRLLTPQSRDLLQYKKELDYTQAMACVHALVTALDLRD
Sbjct:    1 MARDEEEGMLLAPCVALQVTRQGLDRATSAAVLAPFHGREESNEAEGEGGRAKQTSTRWHLTIFQVPENDQLSCLDSMLVQTGPAHAYFPCEPSSKKKETGGSKAEKGDQRKLQHILERQGIDASPLPQKGSAFRPPPEDFESNLLPRLLTPQSRDLLQYKKELDYTQAMACVHALVTALDLRD 184
The following BLAST results are available for this feature:
BLAST of EWM21252.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101387|gb|EWM21252.1|7.353e-154100.00hypothetical protein Naga_101184g2 [Nannochloropsi... [more]
gi|553195723|ref|XP_005856191.1|9.018e-133100.00dna mismatch repair protein msh2, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9452rna9452Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications