rna9452, rna9452 (mRNA) Nannochloropsis gaditana

Overview
Namerna9452
Unique Namerna9452
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length602
Alignment locationKK037253.1:324844..326017 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101184g2.2343.mrna
Orig protein idgnl|cribi|Naga_101184g2.2343
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:324844..326017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101184g2gene9173Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9452rna9452-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21252.1cds9422Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9452 ID=rna9452|Name=rna9452|organism=Nannochloropsis gaditana|type=mRNA|length=602bp
AATATAGCTACCGATAGCTGATTTTTGTGCTTTCACGTGATTTTGCAGGG
CATACGCAGCGGTTCATTTTACGACAGCAGCGGGTCGTCATGTCGCAGTC
TTTGTTCAACAAACTCCAATCTGGTCTCAATTACCTGGATGGGGCTTTCA
AGGAGACCATGGAGGGCGAAGAGGAGGCGACCGAGGAGATGCTGCTAGAG
CAGCGACGACAGCGCCAACTTCGCATGACCGCAGTCCAACAGCAAGCCGC
CTTTGGGAGTGCCCTGTACCCCTCGGACTCGGGGACACAGGAGAGCGGCT
TTCCTCCGGGGATGGTGGCGCGGAAAGAAGATGCGGCCACGGGAAAGGGG
AATGAGATCCCCGTCAAGGAGGAGAAAGGTCATGAACATTTGGCAGGTAC
TGCACGGAAGCCCGCCCCGCCAGCACCTTCGAGACGCTCGCCTCCTCCTC
CCCACCCCGGCGTCCACATTCGAAGGGAGGGGGGAAGCGCGGAGGAAGAG
GTTGCCGAGACCCCTGCCTGCTTGCTGGGCATGTCCTCTCCGTTAGCGGC
GGGGCCCCTGGTCCGGGAAAGCGAGGTGTGGAAAGAGGAAGCGGGGGAGT
GA
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protein sequence of rna9452

>rna9452-protein ID=rna9452-protein|Name=rna9452|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MARDEEEGMLLAPCVALQVTRQGLDRATSAAVLAPFHGREESNEAEGEGG
RAKQTSTRWHLTIFQVPENDQLSCLDSMLVQTGPAHAYFPCEPSSKKKET
GGSKAEKGDQRKLQHILERQGIDASPLPQKGSAFRPPPEDFESNLLPRLL
TPQSRDLLQYKKELDYTQAMACVHALVTALDLRDGAMEGTGGGWKGRTRG
VTKKHGEQEE
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mRNA from alignment at KK037253.1:324844..326017+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9452 ID=rna9452|Name=rna9452|organism=Nannochloropsis gaditana|type=mRNA|length=1174bp|location=Sequence derived from alignment at KK037253.1:324844..326017+ (Nannochloropsis gaditana)
ATGGCacgcgacgaggaggaaggcatgctCTTGGCGCCTTGCGTCGCTCT
GCAGGTGCGTGGCTTGTGTCCTTGCTTCTGTCCTTTTGTCTTCCTTCCAa
gcggcctcctctcccgccttttccttgccttcAGGTGACGCGCCAAGGCC
TCGACCGGGCCACGTCTGCCGCAGTGCTCGCTCCTTTtcatggcagggag
gagtcCAACGaagcagagggagaaggaggaagggcgaagcAGACGTCCAC
GCGGTGGCATTTGACGATCTTTCAGGTTCCCGAGAATGACCAGGTCAGGG
CGTAGTCAGAAAGGAAATGGATGAGGTGAAGAGAAGGGTATTCCGGTCAA
TTTAGGGCTCGGGAATAGAGCACTCATTTCCCGGTGGGGGAAACGTTCAG
CAGGCCTTGCGTAGCCACCTGCTGGGTATTCTCTCCTGGGCTCTtacatc
cctctcccctcctttccccttcagcTCAGCTGCTTGGACAGCATGCTGGT
ACAGACTGGTCCAGCACATGCTTACTTTCCGTGCGAACCTTCCTctaaaa
aaaaagagacggGGGGTTCCAAGGCAGAAAAGGGGGATCAGCGCAAGCTA
CAACACATCTTGGAGCGGcaggtgagggaaggagggagggagggaagagg
ggaataTGGAAGATGGCCACCTGCGCCCGGCACAATTCTGTAGCCAAGAG
GACTGGATTCTACCCTTGTAATCCGTGGTGCTTGGTCTGGGGGGGCGCCA
TCCGAGCGTCTCCCCCGCCGGTCTCGGGGTCTCGTCCCGATCCGTTCCAC
ATGCCCGGGCCCTCCGCTCATTATTGGCTCGGTCCACCCGCCGATctacc
gccctcccctctctacTGCTCACATACgcggccttcccttcctcccttta
gGGCATCGATGCGTCTCCTCTACCCCAAAAGGGTAGtgccttccgccccc
ctccggaGGACTTCGaatccaacctcctccctcgcctcctcaccccccag
AGCCGCGATTTGTTGCAGTATAAAAAAGAGCTGGATTACACACAGGCCAT
GGCCTGTGTGCACGCCCTTGTCACCGCGTTGGACCTCCGAGACGGTGCGA
TGGAGGGCACCGGGGgcgggtggaaaggaaggacgcggggggTGACCAAA
AAGCATGGGGAACAAGAAGAATAA
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Coding sequence (CDS) from alignment at KK037253.1:324844..326017+

>rna9452 ID=rna9452|Name=rna9452|organism=Nannochloropsis gaditana|type=CDS|length=2532bp|location=Sequence derived from alignment at KK037253.1:324844..326017+ (Nannochloropsis gaditana)
ATGGCacgcgacgaggaggaaggcatgctCTTGGCGCCTTGCGTCGCTCT
GCAGGTGACGCGCCAAGGCCTCGACCGGGCCACGTCTGCCGCAGTGCTCG
CTCCTTTtcatggcagggaggagtcCAACGaagcagagggagaaggagga
agggcgaagcAGACGTCCACGCGGTGGCATTTGACGATCTTTCAGGTTCC
CGAGAATGACCAGcTCAGCTGCTTGGACAGCATGCTGGTACAGACTGGTC
CAGCACATGCTTACTTTCCGTGCGAACCTTCCTctaaaaaaaaagagacg
gGGGGTTCCAAGGCAGAAAAGGGGGATCAGCGCAAGCTACAACACATCTT
GGAGCGGcagGGCATCGATGCGTCTCCTCTACCCCAAAAGGGTAGtgcct
tccgcccccctccggaGGACTTCGaatccaacctcctccctcgcctcctc
accccccagAGCCGCGATTTGTTGCAGTATAAAAAAGAGCTGGATTACAC
ACAGGCCATGGCCTGTGTGCACGCCCTTGTCACCGCGTTGGACCTCCGAG
ACGGTGCGATGGAGGGCACCGGGGgcgggtggaaaggaaggacgcggggg
gTGACCAAAAAGCATGGGGAACAAGAAGAATAAATGGCacgcgacgagga
ggaaggcatgctCTTGGCGCCTTGCGTCGCTCTGCAGGTGACGCGCCAAG
GCCTCGACCGGGCCACGTCTGCCGCAGTGCTCGCTCCTTTtcatggcagg
gaggagtcCAACGaagcagagggagaaggaggaagggcgaagcAGACGTC
CACGCGGTGGCATTTGACGATCTTTCAGGTTCCCGAGAATGACCAGcTCA
GCTGCTTGGACAGCATGCTGGTACAGACTGGTCCAGCACATGCTTACTTT
CCGTGCGAACCTTCCTctaaaaaaaaagagacggGGGGTTCCAAGGCAGA
AAAGGGGGATCAGCGCAAGCTACAACACATCTTGGAGCGGcagGGCATCG
ATGCGTCTCCTCTACCCCAAAAGGGTAGtgccttccgcccccctccggaG
GACTTCGaatccaacctcctccctcgcctcctcaccccccagAGCCGCGA
TTTGTTGCAGTATAAAAAAGAGCTGGATTACACACAGGCCATGGCCTGTG
TGCACGCCCTTGTCACCGCGTTGGACCTCCGAGACGGTGCGATGGAGGGC
ACCGGGGgcgggtggaaaggaaggacgcggggggTGACCAAAAAGCATGG
GGAACAAGAAGAATAAATGGCacgcgacgaggaggaaggcatgctCTTGG
CGCCTTGCGTCGCTCTGCAGGTGACGCGCCAAGGCCTCGACCGGGCCACG
TCTGCCGCAGTGCTCGCTCCTTTtcatggcagggaggagtcCAACGaagc
agagggagaaggaggaagggcgaagcAGACGTCCACGCGGTGGCATTTGA
CGATCTTTCAGGTTCCCGAGAATGACCAGcTCAGCTGCTTGGACAGCATG
CTGGTACAGACTGGTCCAGCACATGCTTACTTTCCGTGCGAACCTTCCTc
taaaaaaaaagagacggGGGGTTCCAAGGCAGAAAAGGGGGATCAGCGCA
AGCTACAACACATCTTGGAGCGGcagGGCATCGATGCGTCTCCTCTACCC
CAAAAGGGTAGtgccttccgcccccctccggaGGACTTCGaatccaacct
cctccctcgcctcctcaccccccagAGCCGCGATTTGTTGCAGTATAAAA
AAGAGCTGGATTACACACAGGCCATGGCCTGTGTGCACGCCCTTGTCACC
GCGTTGGACCTCCGAGACGGTGCGATGGAGGGCACCGGGGgcgggtggaa
aggaaggacgcggggggTGACCAAAAAGCATGGGGAACAAGAAGAATAAA
TGGCacgcgacgaggaggaaggcatgctCTTGGCGCCTTGCGTCGCTCTG
CAGGTGACGCGCCAAGGCCTCGACCGGGCCACGTCTGCCGCAGTGCTCGC
TCCTTTtcatggcagggaggagtcCAACGaagcagagggagaaggaggaa
gggcgaagcAGACGTCCACGCGGTGGCATTTGACGATCTTTCAGGTTCCC
GAGAATGACCAGcTCAGCTGCTTGGACAGCATGCTGGTACAGACTGGTCC
AGCACATGCTTACTTTCCGTGCGAACCTTCCTctaaaaaaaaagagacgg
GGGGTTCCAAGGCAGAAAAGGGGGATCAGCGCAAGCTACAACACATCTTG
GAGCGGcagGGCATCGATGCGTCTCCTCTACCCCAAAAGGGTAGtgcctt
ccgcccccctccggaGGACTTCGaatccaacctcctccctcgcctcctca
ccccccagAGCCGCGATTTGTTGCAGTATAAAAAAGAGCTGGATTACACA
CAGGCCATGGCCTGTGTGCACGCCCTTGTCACCGCGTTGGACCTCCGAGA
CGGTGCGATGGAGGGCACCGGGGgcgggtggaaaggaaggacgcgggggg
TGACCAAAAAGCATGGGGAACAAGAAGAATAA
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Synonyms
Publications