rna9438, rna9438 (mRNA) Nannochloropsis gaditana

Overview
Namerna9438
Unique Namerna9438
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length402
Alignment locationKK037253.1:289098..290240 -

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Properties
Property NameValue
ProductRibosomal protein/NADH dehydrogenase domain protein
Orig transcript idgnl|cribi|Naga_100538g2.4543.mrna
Orig protein idgnl|cribi|Naga_100538g2.4543
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:289098..290240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100538g2gene9159Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9438rna9438-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21265.1cds9408Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9438 ID=rna9438|Name=rna9438|organism=Nannochloropsis gaditana|type=mRNA|length=402bp
ATGTGGGATCTGAGTAACCGCATTGGAGAGGTTTGGTGCACGGGGAGCGC
CGATCCTGTCAATTTGCATCATCCACAAGACCGCTTTAAAAGAAGAGTCG
TCGCGTCGCATATCATGCCCGCTGCCGCTATCAATGGCCATGGGCCCAGT
GCCGGTGCCGGCGGCGGAGACATGGACCCCGAGCTCGCCCATGCGGAAGA
AACGCTGCTCATGATGAAAAAAGCCCCTGCTGGGACGTCGGCCAGCTCCG
TGGGCCGCCGGAGTGGTTTCCACATCCCTCCCATGACCCCCACGGGTGCT
ACCTTCCATGGCCGTCGCGGGGGAGTGGGCCGGAGCGGAGGGAAGGGCAG
CCCCTCGATTTGTGCCAACGGTGCTCGGCGGAGGGTTTGCAGCGAGGCAT
AA
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protein sequence of rna9438

>rna9438-protein ID=rna9438-protein|Name=rna9438|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
MGVRPLLRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPR
LRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIH
QHAHVINAKYEDEGKELEA
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mRNA from alignment at KK037253.1:289098..290240-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9438 ID=rna9438|Name=rna9438|organism=Nannochloropsis gaditana|type=mRNA|length=1143bp|location=Sequence derived from alignment at KK037253.1:289098..290240- (Nannochloropsis gaditana)
TACAGGAAAAGGGAGTGGGTGCTCAAGACATACCGGCGTGGAGGGTTGAT
AGCATAACCGAGGTACAAGGGGGAGGCTGCGTAATAAATACATACACCCC
TCAAGTACACTACCCTGCAAATTAAAACCCCAGCATCTCTACAATGATAT
AGACTTCAAAGCTGTCGCGTAGCGCTTTATCGACCACGGCGAATGTCGAA
CTAACCATTTGCGACCTGTCTCTTCCCTCCCAGGCATCATTACCTCAGGC
ACCTCCCTACCATGGGTGTTCGTCCCCTCCTGCGTGTCAGCAAGGCGCAA
GCCACGCATCTTTTCCGCTTTATCACCCACGTCGAAATCAGGTAAAAGCA
AAACGCGTTGGGTTGTTGGACTGGATGCTTTCAAAGCGCCTAGCTCCTCC
TCGGGCTATTAATTAGCGCTGGGATGGTACCGGTCAAGTGGTTCACTTGG
CATCGAATGGCATGCCCCGCCGCGGTAAAACAGGCGGCACGTATCCCATA
ACCTGACCAGTGTCCCTTCTCCCCTTGATCCCACCCTTTTCTTTCCTCTC
CCATATACCCCTTCCTTCAGTCTGAACCCGTGGTCCGAGTTTCGACTGGC
CAGCACGCGCGAATTCTGGCGCGCCATTTCCGTACCACGTTTGCGCAAAG
CCAACCCAAAATGCGTGATCAATGTAGAGACGCATAACAAGAAGGTGGCT
CCCATGGTGGCCGTCAAGTGAGGGAGGGGGGGAAGGGGGAAGGGGGAAGG
GGGAAGGGAGGGAGGATACGAGGGAGGGAGGGACAGAGGGTGGGAAGGTG
GGAGGTCGACTGGAGGCCCTGGTGGTGCTCTAGTAGATATAGCCAAGACA
AATATGAATCGTGGGTTAAATCCAAGGACGTGGTCATTGTGAGATTTGAA
TGCGTCGCGAACTCTTGACGCCTCTGTCCTTTTTTTTCCTTACACATCTT
GACAGGTATTTAGATGGAAGCTCACAGACGTTCGAGCCGGAGAAGCTTGA
TGTGGTGGAGATTATGAGTGATATTCACCAGCATGCACATGTAATCAATG
CCAAATATGAGGATGAAGGGAAAGAGCTCGAGGCATAAAAAAAGGGGGAA
AAAATCAGTAAAAGTACGAAAAACTCTCCCGGGCACCTCCTTG
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Coding sequence (CDS) from alignment at KK037253.1:289098..290240-

>rna9438 ID=rna9438|Name=rna9438|organism=Nannochloropsis gaditana|type=CDS|length=1080bp|location=Sequence derived from alignment at KK037253.1:289098..290240- (Nannochloropsis gaditana)
GTATTTAGATGGAAGCTCACAGACGTTCGAGCCGGAGAAGCTTGATGTGG
TGGAGATTATGAGTGATATTCACCAGCATGCACATGTAATCAATGCCAAA
TATGAGGATGAAGGGAAAGAGCTCGAGGCATAATCTGAACCCGTGGTCCG
AGTTTCGACTGGCCAGCACGCGCGAATTCTGGCGCGCCATTTCCGTACCA
CGTTTGCGCAAAGCCAACCCAAAATGCGTGATCAATGTAGAGACGCATAA
CAAGAAGGTGGCTCCCATGGTGGCCGTCAAATGGGTGTTCGTCCCCTCCT
GCGTGTCAGCAAGGCGCAAGCCACGCATCTTTTCCGCTTTATCACCCACG
TCGAAATCAGGTATTTAGATGGAAGCTCACAGACGTTCGAGCCGGAGAAG
CTTGATGTGGTGGAGATTATGAGTGATATTCACCAGCATGCACATGTAAT
CAATGCCAAATATGAGGATGAAGGGAAAGAGCTCGAGGCATAATCTGAAC
CCGTGGTCCGAGTTTCGACTGGCCAGCACGCGCGAATTCTGGCGCGCCAT
TTCCGTACCACGTTTGCGCAAAGCCAACCCAAAATGCGTGATCAATGTAG
AGACGCATAACAAGAAGGTGGCTCCCATGGTGGCCGTCAAATGGGTGTTC
GTCCCCTCCTGCGTGTCAGCAAGGCGCAAGCCACGCATCTTTTCCGCTTT
ATCACCCACGTCGAAATCAGGTATTTAGATGGAAGCTCACAGACGTTCGA
GCCGGAGAAGCTTGATGTGGTGGAGATTATGAGTGATATTCACCAGCATG
CACATGTAATCAATGCCAAATATGAGGATGAAGGGAAAGAGCTCGAGGCA
TAATCTGAACCCGTGGTCCGAGTTTCGACTGGCCAGCACGCGCGAATTCT
GGCGCGCCATTTCCGTACCACGTTTGCGCAAAGCCAACCCAAAATGCGTG
ATCAATGTAGAGACGCATAACAAGAAGGTGGCTCCCATGGTGGCCGTCAA
ATGGGTGTTCGTCCCCTCCTGCGTGTCAGCAAGGCGCAAGCCACGCATCT
TTTCCGCTTTATCACCCACGTCGAAATCAG
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Synonyms
Publications