EWM21265.1, cds9408 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|585101417|gb|EWM21265.1| (Ribosomal protein/NADH dehydrogenase domain protein [Nannochloropsis gaditana]) HSP 1 Score: 248.054 bits (632), Expect = 1.920e-83 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query: 1 MGVRPLLRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELEA 119
MGVRPLLRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELEA
Sbjct: 1 MGVRPLLRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELEA 119
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|224000992|ref|XP_002290168.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973590|gb|EED91920.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 75.485 bits (184), Expect = 2.268e-15 Identity = 39/112 (34.82%), Postives = 66/112 (58.93%), Query Frame = 0
Query: 7 LRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
L+V+K ++HL ++I V+IS NP+ + R S RE R I+V R R+ANPK I + AP V ++DG+ + F+ ++ E++ D+ + A ++ +E EGK +E
Sbjct: 3 LKVTKDMSSHLIKYIRTVDISFNPF-DMRTRSARELLRQINVDRYRRANPKLKIKTNILSTPHAPSVKFAFVDGTDKNFDSKEFLADEMLMDVWRTAMKMDDDFELEGKNVE 113
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|1072232073|gb|OEU16805.1| (hypothetical protein FRACYDRAFT_186261 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 74.3294 bits (181), Expect = 7.128e-15 Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 0
Query: 7 LRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
++ +K ++ LF+++ V+I NP+ R AS RE WR + R KANPK IN E AP V K +D + + F+ EI D+H +N ++E GK L+
Sbjct: 3 IKFTKETSSRLFKYVKTVDIRFNPFDN-RTASAREIWRQMQSTRYYKANPKLKINTEVLGTAAAPEVVFKLIDDTVKRFDSRHYTANEIFFDVHLSLENLNNEFEMSGKSLD 113
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|1214710417|gb|OWZ21508.1| (hypothetical protein PHMEG_0003923 [Phytophthora megakarya]) HSP 1 Score: 59.6918 bits (143), Expect = 3.003e-9 Identity = 31/105 (29.52%), Postives = 52/105 (49.52%), Query Frame = 0
Query: 14 ATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
A ++ RF+ +S + + R EF+R ++ + RK NPK IN ET P + + +++GS E +V EI ++ H I +YE +GK +E
Sbjct: 3 ARNVVRFLKSANVSFSSFDR-RATGACEFYRQLTAEKTRKMNPKAEINQETTLTGTLPTIKLDFINGSKHVMEVPNKNVREIFEEVDFHCSQIETEYEKQGKSIE 106
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|544209816|ref|XP_005535310.1| (hypothetical protein CYME_CMC090C [Cyanidioschyzon merolae strain 10D] >gi|449015622|dbj|BAM79024.1| hypothetical protein CYME_CMC090C [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 59.3066 bits (142), Expect = 6.340e-9 Identity = 29/94 (30.85%), Postives = 52/94 (55.32%), Query Frame = 0
Query: 16 HLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVI--NVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVIN 107
+LFR I +++ +P+ ++R S REF R ++ PR+R+ANP+ V+ V + + +LDG + T +P +DV I +I + V+
Sbjct: 16 NLFRAIAKCQVAFDPY-DYRSVSAREFLRRVNSPRVRRANPRLVVEATVRDGGGSGGAELVISFLDGRTLTLQPLDVDVKTIEREIALNIPVLT 108
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|673036790|ref|XP_008872356.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|673036792|ref|XP_008872357.1| hypothetical protein H310_08416 [Aphanomyces invadans] >gi|574471922|gb|ETV98928.1| hypothetical protein H310_08416 [Aphanomyces invadans] >gi|574471923|gb|ETV98929.1| hypothetical protein, variant [Aphanomyces invadans]) HSP 1 Score: 57.3806 bits (137), Expect = 2.105e-8 Identity = 31/107 (28.97%), Postives = 54/107 (50.47%), Query Frame = 0
Query: 14 ATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKC--VINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
A + RF+ EIS + + R EF+R ++ + +K NPKC V NV H K P++ + +++ + + DV +I +DI H I + E +GK ++
Sbjct: 3 ARDVIRFLKKAEISFSSFDS-RATGACEFYRQLNATKTKKVNPKCEVVYNVAVHGKS-DPLIKLTFINDKQEKYHVPGRDVRDIFNDIEYHCSQIESDLEAQGKSMD 107
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|675204551|ref|XP_008911160.1| (hypothetical protein PPTG_15641 [Phytophthora parasitica INRA-310] >gi|566015161|gb|ETI38072.1| hypothetical protein F443_16086 [Phytophthora parasitica P1569] >gi|567952620|gb|ETK78292.1| hypothetical protein L915_15631 [Phytophthora parasitica] >gi|567981279|gb|ETL31722.1| hypothetical protein L916_15527 [Phytophthora parasitica] >gi|568010767|gb|ETL84950.1| hypothetical protein L917_15349 [Phytophthora parasitica] >gi|568040671|gb|ETM38119.1| hypothetical protein L914_15482 [Phytophthora parasitica] >gi|568088530|gb|ETN03387.1| hypothetical protein PPTG_15641 [Phytophthora parasitica INRA-310] >gi|570318895|gb|ETO66843.1| hypothetical protein F444_16071 [Phytophthora parasitica P1976] >gi|570942700|gb|ETP07957.1| hypothetical protein F441_15915 [Phytophthora parasitica CJ01A1] >gi|570973341|gb|ETP36002.1| hypothetical protein F442_15937 [Phytophthora parasitica P10297] >gi|970658135|gb|KUF95936.1| hypothetical protein AM587_10010812 [Phytophthora nicotianae] >gi|970658779|gb|KUF96503.1| hypothetical protein AM588_10006714 [Phytophthora nicotianae]) HSP 1 Score: 56.9954 bits (136), Expect = 3.597e-8 Identity = 30/105 (28.57%), Postives = 53/105 (50.48%), Query Frame = 0
Query: 14 ATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
A ++ RF+ ++S + + R EF+R ++ + RK NPK I +T AP + + +++GS E +V EI ++ H I +YE +GK +E
Sbjct: 3 ARNVVRFLKSAKVSFSSFDR-RATGACEFYRQLTAEKTRKVNPKAEIVYQTSLTGSAPTIKLDFINGSKHLMEVPDKNVREIFEEVDFHCSQIETEYEKQGKTIE 106
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|301093488|ref|XP_002997590.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110553|gb|EEY68605.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 56.225 bits (134), Expect = 6.631e-8 Identity = 29/105 (27.62%), Postives = 53/105 (50.48%), Query Frame = 0
Query: 14 ATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
A ++ RF+ ++S + + R EF+R ++ + RK NPK I +T + P + + ++ GS E +V EI ++ H I +YE++GK +E
Sbjct: 3 ARNVVRFLKSAKVSFSSFDR-RATGACEFYRQLTAEKTRKVNPKAEIAHQTSLAGILPTIKLDFISGSKHVMEVPDKNVREIFEEVDFHCSQIETEYENQGKTIE 106
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|953490765|emb|CEG46419.1| (hypothetical protein PHALS_02822 [Plasmopara halstedii]) HSP 1 Score: 55.4546 bits (132), Expect = 1.498e-7 Identity = 28/105 (26.67%), Postives = 54/105 (51.43%), Query Frame = 0
Query: 14 ATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
A +L RF+ +S + + + R EF+R ++ + RK NPK I + P + +++++GS+Q E +V++I D+ I +YE+ GK ++
Sbjct: 3 ARNLVRFLKSANVSFSSFDK-RATGACEFYRQLAAEKTRKVNPKAEIAFQPSLTGSLPTIKLEFINGSTQLMEVPDKNVLDIFEDVDFFCSQIETEYEELGKTID 106
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|397640215|gb|EJK73997.1| (hypothetical protein THAOC_04358 [Thalassiosira oceanica]) HSP 1 Score: 56.9954 bits (136), Expect = 1.598e-7 Identity = 28/84 (33.33%), Postives = 48/84 (57.14%), Query Frame = 0
Query: 35 RLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
R S RE R RL +ANPK + + H++ AP V V ++DG+ TF+ ++ +++ DI + A ++ ++E EGK +E
Sbjct: 108 RTRSAREVMRQFEAQRLVRANPKLKVKADVHSRPSAPEVKVSFVDGTDLTFDSQEYIAADMLMDIWRAAMKLDDEFELEGKNVE 191 The following BLAST results are available for this feature:
BLAST of EWM21265.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|