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Properties
| Property Name | Value |
|---|
| Product | snf2 family helicase |
| Orig transcript id | gnl|cribi|Naga_100467g2.536.mrna |
| Orig protein id | gnl|cribi|Naga_100467g2.536 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037253.1 | supercontig | KK037253.1:278062..279179 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9434 ID=rna9434|Name=rna9434|organism=Nannochloropsis gaditana|type=mRNA|length=1724bp
GCGTGCGCCTGGTCCTACCGTTTCATCGTGCTTAGCTGAGTCTTATGCGG
GCCCGTGCGCCTGGTCCTACCGTTTCATCGTGCTTAGCTGAGTCTTATGC
GGGCCCGTGCGCCTGGTCCTACCGTTTCATCGTGCTTAGCTGAGTCTTAT
GCGGGCCCGTGCGCCTGGTCCTACCGTTTCATCGTGCTTAGCTGAGTCTT
ATGCGGGCCCGTGCGCCTGGTCCTACCGTTTCCTCGTGCTTGTCTGAGTC
TTATGCGGGCCCAAGAAAACCCCTGTCGGCTTTTTCTGTGCGTTCCCCAG
GCCCCCCTGCCAGCCGTCCTTGTCGTCGTCAAGACCATGCCCTGCATTTT
CTCGGGGGTCCTCGCCGCCTTCACCCGATCGCCCCCTCACTGTCGCCCTT
CTCCCCCCCTCCCCGCTTCCTCCTTCCTTTTCCCTCATCCCAGCAACTGC
CATGCAAACTCCTTCCGGCTAGAAGCCATCTCCTTCTTCCAAAAACACAA
CGTCACGGTCCACTCCTACGGCCGCTGCCTCAACAACCAGCCCGACATCC
ACAAGGACGACCGCCTGCCCCACGTGAAATTCTCCCTGGCCTTTGAGAAC
AGCGAGGAGGTGGACTATGTGACGGAGAAATACTTTCAAGCGCTGAATTT
CGGTGCCGTCCCCGTCGTCATTGGCGCCCCCAACATCCTCGACTACGCGC
CCAGCGAGAATTCCATCATCCACATCGAAAATTTAGCGGCCTTGCCCCGA
GTCGCCGCCCAAATGCAGGCCTTGATGGCCGACGACCACGCCTACGACGC
CATGCTCGCTTGGAAAGCCCGGGGGCCGTCCGATCAGTTCCTGGCCCTCG
TCGACGTAGGCACCGTGGCCCCCGAATGCCGGCTTTGCTTGTATTTGGCG
GACCGGGTCCGACGCGGGGAAGCATTCAAAGACCGGGCCAAGGCGAAAGA
GGATGGGTACCGGCGGCCCTGCGCCTGTCGTCCCCAGGAGGAAGGAGGGG
AGGGAGGGTCCAACGGGGTCATACACCACCTGTACGTGCGCGAGCGGTTC
ACGTTCGAATACCGGTCGCTGTTTCTCACGGAACCTTTCACGGTGGCCAC
GCTCCATGCGACCCTTCTGGCCTTGTACGGGAGCGAACACCGACCGGTGT
GGACTCGAAAGCGCCCGAGCTACCGGAAAAAAAGCCCCGATGGGTCGTGG
GACATGGCGTACGTGCCGATCAAGATCCACAAGGTTTATCCTGCGGGAAT
CACTACCAAGGAGGCCTTGTATGGCCAGATCCCGGACGCGTTTTCGGTCG
TTGGAAACAGAACCATGGACCAAGCATTGCGGAGATGGGTGAAGCAAAAT
CCGTGCGGTGAAATCGAAGTCACCTTCGTGTAGTCGCACATTTGTGAGTT
TAATGACCTGATGGGGGAATCAGAGAGAGACGCTGAGGTTGAAGGAGTGA
GCACCCATTATAGGGCAGTGATGTCATCGGATCGTTCACACATTAGTTGT
TTAGGCCATGACATTGAGAAAATTGTGGCATAAATCATCTCAGAAAGACG
GTTGCACCCAACAGTATCATTTTGTGATTTTCAGGAGTTTCCTTTTTTAA
TGATCATTTTCAATTAGAGATTGCAAGAGTGGCAACGGAATAGTTTCATC
ACGAAAATGGCTCGTGCTCTTTCCTCAACCAAGCAACAGAACCTGTCTTC
TATATCGATCCTTCCGAAAAAACG back to topprotein sequence of rna9434 >rna9434-protein ID=rna9434-protein|Name=rna9434|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MGMGKTTDWDVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGR
VVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFL
RHQPWDDPVWWRKVISEPFQGRAG back to topmRNA from alignment at KK037253.1:278062..279179+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9434 ID=rna9434|Name=rna9434|organism=Nannochloropsis gaditana|type=mRNA|length=1118bp|location=Sequence derived from alignment at KK037253.1:278062..279179+ (Nannochloropsis gaditana)
atggtgaggaggagggagggagggagggaaggagggagggaggggcggga
gggcaaggctTGGTCGGGGCTATGCACGGATGGCTTCCCCCGATGGGCTC
AACCGTCCCTCGCATCTCTCTCCCACCAATTCTGGCAGGGTATGGGGAAG
ACGGTGATGGTCCTAGCGCTCATCCTCCAGTCCAAGGCCCTCCAGGAAGG
GGGCCCtcgcccgctctcccccccgccctcgcccccgccctaccccccgc
cctcgcccccgcccgacCCTGGTCGTggtccccctttccctcctctccca
atgGCACGACGAAATCCTGCGCTTCTCCGCTCCCAAGGCCCTCTCCGTAT
GCGTCTACTACGGCTCGGATCGGGGCGCCGCCGGAAAAGGCGGGCGAGGC
TTGACTTCCGTGGCATCATCCGTCCCTCGGAAGACCGACTGGGACGTGGT
ACTCACCACGTACGGCACGCTCCAACAGGAACACGtgcggtgggaaggag
ggcgggggggagggcgggagggagggcgggagggagggggcctgTTTGGG
GTCCGGTGGGGTCGTGTCGTGTTGGACGAGGCGCACACAATCAAGAACCA
GGGCACAGAGGCCTTCCGGGCCGCCTTCGCCCTGGAAGCTTCTAGAAGGT
GGGCGTTGACCGGCACCCCCATCCAGAACGTGCTGGACGACGTCTTTTCC
CtgctccgcttcctccgccaccagccTTGGGATGATCCCGTGTGGTGGCG
GAAGGTGATTTCGGAGCCCTTCCAAGGGCGggcaggtgggaaggagggcg
ggaaggagggcgggaaggagggcgggaaggagggagaggaagaagggggg
gagggcggggcagccTTGGAACGTTTGCGGAACGTGTTGGCGCCGGTTCT
GTTGCGGCGgacgaaggaaagcagggatgaggagggaaaaaaaatcgtgC
AACTGGCTCGACGAGAGGTTCGAATCGTGGAGGTGGAATTCTCCGAGCCG
GAACGGACATTTTACGAGGCGTTACGGGCGAAGAGtaaatttgaatttga
atCTTTCGTCCGGGCAGGGACGCACCAGGAGAAATACGCGCAGATCTTGG
TGTTGTTGCTTAGGTTAA back to topCoding sequence (CDS) from alignment at KK037253.1:278062..279179+ >rna9434 ID=rna9434|Name=rna9434|organism=Nannochloropsis gaditana|type=CDS|length=1500bp|location=Sequence derived from alignment at KK037253.1:278062..279179+ (Nannochloropsis gaditana)
atgGGTATGGGGAAGACGACCGACTGGGACGTGGTACTCACCACGTACGG
CACGCTCCAACAGGAACACGtgcggtgggaaggagggcgggggggagggc
gggagggagggcgggagggagggggcctgTTTGGGGTCCGGTGGGGTCGT
GTCGTGTTGGACGAGGCGCACACAATCAAGAACCAGGGCACAGAGGCCTT
CCGGGCCGCCTTCGCCCTGGAAGCTTCTAGAAGGTGGGCGTTGACCGGCA
CCCCCATCCAGAACGTGCTGGACGACGTCTTTTCCCtgctccgcttcctc
cgccaccagccTTGGGATGATCCCGTGTGGTGGCGGAAGGTGATTTCGGA
GCCCTTCCAAGGGCGggcagGTTAAatgGGTATGGGGAAGACGACCGACT
GGGACGTGGTACTCACCACGTACGGCACGCTCCAACAGGAACACGtgcgg
tgggaaggagggcgggggggagggcgggagggagggcgggagggaggggg
cctgTTTGGGGTCCGGTGGGGTCGTGTCGTGTTGGACGAGGCGCACACAA
TCAAGAACCAGGGCACAGAGGCCTTCCGGGCCGCCTTCGCCCTGGAAGCT
TCTAGAAGGTGGGCGTTGACCGGCACCCCCATCCAGAACGTGCTGGACGA
CGTCTTTTCCCtgctccgcttcctccgccaccagccTTGGGATGATCCCG
TGTGGTGGCGGAAGGTGATTTCGGAGCCCTTCCAAGGGCGggcagGTTAA
atgGGTATGGGGAAGACGACCGACTGGGACGTGGTACTCACCACGTACGG
CACGCTCCAACAGGAACACGtgcggtgggaaggagggcgggggggagggc
gggagggagggcgggagggagggggcctgTTTGGGGTCCGGTGGGGTCGT
GTCGTGTTGGACGAGGCGCACACAATCAAGAACCAGGGCACAGAGGCCTT
CCGGGCCGCCTTCGCCCTGGAAGCTTCTAGAAGGTGGGCGTTGACCGGCA
CCCCCATCCAGAACGTGCTGGACGACGTCTTTTCCCtgctccgcttcctc
cgccaccagccTTGGGATGATCCCGTGTGGTGGCGGAAGGTGATTTCGGA
GCCCTTCCAAGGGCGggcagGTTAAatgGGTATGGGGAAGACGACCGACT
GGGACGTGGTACTCACCACGTACGGCACGCTCCAACAGGAACACGtgcgg
tgggaaggagggcgggggggagggcgggagggagggcgggagggaggggg
cctgTTTGGGGTCCGGTGGGGTCGTGTCGTGTTGGACGAGGCGCACACAA
TCAAGAACCAGGGCACAGAGGCCTTCCGGGCCGCCTTCGCCCTGGAAGCT
TCTAGAAGGTGGGCGTTGACCGGCACCCCCATCCAGAACGTGCTGGACGA
CGTCTTTTCCCtgctccgcttcctccgccaccagccTTGGGATGATCCCG
TGTGGTGGCGGAAGGTGATTTCGGAGCCCTTCCAAGGGCGggcagGTTAA back to top
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