EWM21270.1, cds9404 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|585101424|gb|EWM21270.1| (snf2 family helicase [Nannochloropsis gaditana]) HSP 1 Score: 249.21 bits (635), Expect = 1.049e-83 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 MGMGKTTDWDVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQGRAG 124
MGMGKTTDWDVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQGRAG
Sbjct: 1 MGMGKTTDWDVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQGRAG 124
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1208509017|gb|OWM68962.1| (hypothetical protein CDL15_Pgr025149 [Punica granatum]) HSP 1 Score: 129.798 bits (325), Expect = 2.105e-32 Identity = 63/111 (56.76%), Postives = 74/111 (66.67%), Query Frame = 0
Query: 10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQ 120
DVV+TTYG L E E E GGLF VRW RVVLDEAHTIK+ + AA ALEA RRW LTGTPIQN L+D++SLLRFLR +PW + WW K+I +PF+
Sbjct: 542 DVVITTYGILASEF---------SSENAEENGGLFSVRWFRVVLDEAHTIKSSKGQISLAAAALEADRRWCLTGTPIQNSLEDIYSLLRFLRVEPWGNWAWWNKLIQKPFE 643
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1040850033|ref|XP_017236672.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Daucus carota subsp. sativus]) HSP 1 Score: 129.028 bits (323), Expect = 3.287e-32 Identity = 62/112 (55.36%), Postives = 74/112 (66.07%), Query Frame = 0
Query: 10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
DVVLTTYG L E E + GGL+ VRW RVVLDEAHTIKN ++ AA AL A RRW LTGTPIQN L+D++SLLRFLR +PW WW K++ +PF+G
Sbjct: 530 DVVLTTYGVLASEFTA---------ENAEDNGGLYSVRWFRVVLDEAHTIKNSKSQISTAAAALIADRRWCLTGTPIQNNLEDIYSLLRFLRVEPWGSWAWWNKLVQKPFEG 632
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|950954724|ref|XP_014496489.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Vigna radiata var. radiata]) HSP 1 Score: 128.257 bits (321), Expect = 6.164e-32 Identity = 62/112 (55.36%), Postives = 74/112 (66.07%), Query Frame = 0
Query: 10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
DVV+TTYG L E E + GGLF +RW RVVLDEAHTIK+ ++ AA AL A RRW LTGTPIQN L+DV+SLLRFLR +PW WW K+I +PF+G
Sbjct: 508 DVVITTYGILASEF---------SSENADDNGGLFSIRWFRVVLDEAHTIKSSKSQVSVAAAALIADRRWCLTGTPIQNSLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEG 610
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1044577676|ref|XP_017425600.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Vigna angularis] >gi|920700897|gb|KOM44122.1| hypothetical protein LR48_Vigan05g172700 [Vigna angularis] >gi|965604859|dbj|BAT92035.1| hypothetical protein VIGAN_07069300 [Vigna angularis var. angularis]) HSP 1 Score: 127.872 bits (320), Expect = 8.572e-32 Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 0
Query: 10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
DVV+TTYG L E E + GGLF +RW RVVLDEAHTIK+ ++ AA AL A RRW LTGTPIQN L+D++SLLRFLR +PW WW K+I +PF+G
Sbjct: 508 DVVITTYGILASEF---------SSENADDNGGLFSIRWFRVVLDEAHTIKSSKSQVSVAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEG 610
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|947073850|gb|KRH22741.1| (hypothetical protein GLYMA_13G320000 [Glycine max]) HSP 1 Score: 127.487 bits (319), Expect = 1.233e-31 Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 0
Query: 10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
DVV+TTYG L E E + GGLF +RW RVVLDEAHTIK+ ++ AA AL + RRW LTGTPIQN L+D++SLLRFLR +PW WW K+I +PF+G
Sbjct: 538 DVVITTYGILASEF---------SSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISFAAAALISDRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEG 640
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1012340617|gb|KYP51831.1| (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Cajanus cajan]) HSP 1 Score: 127.102 bits (318), Expect = 1.434e-31 Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 0
Query: 10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
DVV+TTYG L E E + GGLF +RW RVVLDEAHTIK+ ++ AA AL A RRW LTGTPIQN L+D++SLLRFLR +PW WW K+I +PF+G
Sbjct: 515 DVVITTYGILASEF---------SSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEG 617
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1150090568|ref|XP_020230971.1| (putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Cajanus cajan]) HSP 1 Score: 127.102 bits (318), Expect = 1.461e-31 Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 0
Query: 10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
DVV+TTYG L E E + GGLF +RW RVVLDEAHTIK+ ++ AA AL A RRW LTGTPIQN L+D++SLLRFLR +PW WW K+I +PF+G
Sbjct: 509 DVVITTYGILASEF---------SSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEG 611
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1109249629|ref|XP_019199573.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X2 [Ipomoea nil]) HSP 1 Score: 126.716 bits (317), Expect = 2.221e-31 Identity = 61/111 (54.95%), Postives = 73/111 (65.77%), Query Frame = 0
Query: 10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQ 120
DVVLTTYG L E E E GGLF VRW RVVLDEAHTIK+ ++ AA AL A RRW LTGTPIQN ++DV+SLLRFLR +PW WW +++ +PF+
Sbjct: 549 DVVLTTYGVLASEF---------SSENAEENGGLFSVRWSRVVLDEAHTIKSSKSQISIAASALIAERRWCLTGTPIQNNIEDVYSLLRFLRIEPWGSWAWWNQLVQKPFE 650
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|571533706|ref|XP_006600435.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Glycine max] >gi|947073849|gb|KRH22740.1| hypothetical protein GLYMA_13G320000 [Glycine max]) HSP 1 Score: 126.716 bits (317), Expect = 2.355e-31 Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 0
Query: 10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
DVV+TTYG L E E + GGLF +RW RVVLDEAHTIK+ ++ AA AL + RRW LTGTPIQN L+D++SLLRFLR +PW WW K+I +PF+G
Sbjct: 538 DVVITTYGILASEF---------SSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISFAAAALISDRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEG 640 The following BLAST results are available for this feature:
BLAST of EWM21270.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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