EWM21275.1, cds9396 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21275.1
Unique Name	cds9396
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037253.1:255108..255260 -
Alignment location	KK037253.1:254843..254938 -
Alignment location	KK037253.1:254297..254362 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21275.1
Product	ATPase inhibitor, IATP, mitochondria
Orig transcript id	gnl\|cribi\|Naga_100331g8.6026.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:255108..255260 -
KK037253.1	supercontig	KK037253.1:254843..254938 -
KK037253.1	supercontig	KK037253.1:254297..254362 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process
GO:0045980	negative regulation of nucleotide metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0030234	enzyme regulator activity
GO:0004857	enzyme inhibitor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

Vocabulary: **INTERPRO**
Term	Definition
IPR007648	ATPase_inhibitor_IATP_mt

Homology

[Close]

BLAST of EWM21275.1 vs. NCBI_GenBank
Match: gi|585101430|gb|EWM21275.1| (ATPase inhibitor, IATP, mitochondria [Nannochloropsis gaditana])

HSP 1 Score: 206.453 bits (524), Expect = 1.862e-67
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query:    1 MALRRLISSSSASMRPTLAAAVNVRSAPAMRMSGKSSFDDKEHAMEDMYIRQAEEKILKKLLKKLKEDEKPACDTTAKKELEKIMGSVPEDLAKKLMDWKKSKH 104
            MALRRLISSSSASMRPTLAAAVNVRSAPAMRMSGKSSFDDKEHAMEDMYIRQAEEKILKKLLKKLKEDEKPACDTTAKKELEKIMGSVPEDLAKKLMDWKKSKH
Sbjct:    1 MALRRLISSSSASMRPTLAAAVNVRSAPAMRMSGKSSFDDKEHAMEDMYIRQAEEKILKKLLKKLKEDEKPACDTTAKKELEKIMGSVPEDLAKKLMDWKKSKH 104

[Close]

BLAST of EWM21275.1 vs. NCBI_GenBank
Match: gi|553187740|ref|XP_005854669.1| (hypothetical protein NGA_0199100 [Nannochloropsis gaditana CCMP526] >gi|422294386|gb|EKU21686.1| hypothetical protein NGA_0199100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 202.216 bits (513), Expect = 8.878e-66
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0

Query:    1 MALRRLISSSSASMRPTLAAAVNVRSAPAMRMSGKSSFDDKEHAMEDMYIRQAEEKILKKLLKKLKEDEKPACDTTAKKELEKIMGSVPEDLAKKLMDWKKSKH 104
            MALRRLISSSSASMRPTLAAAV VRSAPAMRMSGKSSFDDKEHAMEDMYIRQAEEKILKKLLKKLKE+EKPACDTTAKKELEKIMGSVPEDLAKKLMDWKKSKH
Sbjct:    1 MALRRLISSSSASMRPTLAAAVTVRSAPAMRMSGKSSFDDKEHAMEDMYIRQAEEKILKKLLKKLKEEEKPACDTTAKKELEKIMGSVPEDLAKKLMDWKKSKH 104

The following BLAST results are available for this feature:

BLAST of EWM21275.1 vs. NCBI_GenBank

BLAST of EWM21275.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585101430\|gb\|EWM21275.1\|	1.862e-67	100.00	ATPase inhibitor, IATP, mitochondria [Nannochlorop...	[more]
gi\|553187740\|ref\|XP_005854669.1\|	8.878e-66	98.08	hypothetical protein NGA_0199100 [Nannochloropsis ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9426	rna9426	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications