EWM21317.1, cds9350 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21317.1
Unique Name	cds9350
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037253.1:115388..115896 -
Alignment location	KK037253.1:115042..115250 -
Alignment location	KK037253.1:114693..114871 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21317.1
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100214g10.6232.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:115388..115896 -
KK037253.1	supercontig	KK037253.1:115042..115250 -
KK037253.1	supercontig	KK037253.1:114693..114871 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR009790	DUF1356_TMEM106

Homology

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BLAST of EWM21317.1 vs. NCBI_GenBank
Match: gi|585101500|gb|EWM21317.1| (uncharacterized protein Naga_100214g10 [Nannochloropsis gaditana])

HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0

Query:    1 MAWIYAKVVSYIALPVRLVFDVNPMLDIEPFIVVGHAFFSFFAQLSLRISSFKTLIRRDVQAMSSSNPSSSHYYVAVPADGTKSTTSTSTATTAAASSSPATRVLRPKRRCFSLSRAFILLLLLGLLLFFLVPRRPIVRYQSSTLSLDESTSSVTLSQLFSYYNPNYYTVQWNNLHIQVEDQESATPLGYGWHNASFPVRALSSRSSAVNITITAAFSELAPLIKAQCAEKNYVTLASYGTVNAWIWSQNLGAIRIGPFTEVIDCGGAATMQYKRKVQDIRQEKKQERHQERLLPRWL 298
            MAWIYAKVVSYIALPVRLVFDVNPMLDIEPFIVVGHAFFSFFAQLSLRISSFKTLIRRDVQAMSSSNPSSSHYYVAVPADGTKSTTSTSTATTAAASSSPATRVLRPKRRCFSLSRAFILLLLLGLLLFFLVPRRPIVRYQSSTLSLDESTSSVTLSQLFSYYNPNYYTVQWNNLHIQVEDQESATPLGYGWHNASFPVRALSSRSSAVNITITAAFSELAPLIKAQCAEKNYVTLASYGTVNAWIWSQNLGAIRIGPFTEVIDCGGAATMQYKRKVQDIRQEKKQERHQERLLPRWL
Sbjct:    1 MAWIYAKVVSYIALPVRLVFDVNPMLDIEPFIVVGHAFFSFFAQLSLRISSFKTLIRRDVQAMSSSNPSSSHYYVAVPADGTKSTTSTSTATTAAASSSPATRVLRPKRRCFSLSRAFILLLLLGLLLFFLVPRRPIVRYQSSTLSLDESTSSVTLSQLFSYYNPNYYTVQWNNLHIQVEDQESATPLGYGWHNASFPVRALSSRSSAVNITITAAFSELAPLIKAQCAEKNYVTLASYGTVNAWIWSQNLGAIRIGPFTEVIDCGGAATMQYKRKVQDIRQEKKQERHQERLLPRWL 298

The following BLAST results are available for this feature:

BLAST of EWM21317.1 vs. NCBI_GenBank

BLAST of EWM21317.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585101500\|gb\|EWM21317.1\|	0.000e+0	100.00	uncharacterized protein Naga_100214g10 [Nannochlor...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9380	rna9380	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications