rna9380, rna9380 (mRNA) Nannochloropsis gaditana

Overview
Namerna9380
Unique Namerna9380
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1409
Alignment locationKK037253.1:114522..116113 -

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Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100214g10.6232.mrna
Orig protein idgnl|cribi|Naga_100214g10.6232
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:114522..116113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100214g10gene9098Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9380rna9380-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21317.1cds9350Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9380 ID=rna9380|Name=rna9380|organism=Nannochloropsis gaditana|type=mRNA|length=1409bp
GCAGCCTCTGGGGGGAAGACAAAGATGGTTTGTTACATCTCGCTGATCAA
TACGAACACTCAAGACCTGTGACGGATCCTCATGATATTTCATGGTAGAC
CTTATGCAGGGTCTGATACTTATATAAGGATAGAACACGGGATTTCGGGC
CCTTCTTCCGGTGGGAATCGACGTTAACCTCCCCCACCTCTCCTGTGCCT
AGTCCATGGAGCCTGCGACCAAACATGTCTCTCTTGCAGCTTCATCGATC
ACGAACGCATGTGATATGCCGTCATCAATCCAGCATCAGCCCATTGAAGA
GCAGGGAACGGGCATAGAACTTCATGACCAGCAGCAAAAGGAAGCTTTAT
GCTTCGCCATTCTCGAGCATTTCCCCACTATGGTCTTTGCAAAAGATGCC
GACCCCCGCACGCGAATGGACGATCAAACTGGCTTTTGTTACGTCTATTT
CAACGCCCTCATGGACCATGCCAGTGGATTCAATCGTTTGGACATGATTG
GGCAAAACGCCCTCAACCATTTCAATTCCGTCGATGCCAGGCAGTATTTC
TTGGACGACCGTCGTGTTATGGCATTATCGTCTCAGGACCCCGACGCCGT
TCTTGATTTCTATGAACCCTGGCAAGTCCCTTCAGGCAACCATGTCAACC
ACACCCGAAAGCGAAATTTGCAGGATGCCTTCATGCTGGGAACTTTTCTG
ATCGTGGACGAGGTGCATACAGGTAAAAAAGGGAGGCGGTGCCGACAGGC
CCTACCACCTCTTTCGACTCCTCCACCTAGCCCTAGTGACTCCTTTTTCA
GCCGTGCCTTCTACGATTTACCGGTTCCTGTTCTCGTCGTCACAAGCCGG
GCAAGGCACGCATCCTCTTCTTCCAGCTCCCTCGCTCCTCCCCCCTCGAC
TTCGACAGGCCTGATGAAGAATCGGTTGTTCTGTCACTTGTTTAGTCCTG
AAGCTGCCCATGTGTCAAATGCGGAATGCCTGGATACTTTAGTTACCTCT
CACCTCTTAGGCCTGAATCACCTGGCAGAGCCAGGACTCATCCTCGAGTG
GAGTAATGTGGTTCTCGGAGAGAGGGAGGTGGAATACAAAGCTTCGGCAA
GGGGTGCGAAGGGAGGAAAGGGAGGTCTGTGGCACATCATGCAGCGGCGC
TTAGGCGACGCCGAATTGGGCAAGGGAGGAGAGGTGGTGTCAGCGGACGG
CTTGGTTCTGGTGTATGTCCTCTGGCCTCAGGGCGACGAGGGCCAGGCAT
CTCTGGCTCGGGCGAAATCTTAAGCTCGGGCAAGGAATACTTCCGCGGGC
AGTTCTGTTCTTTCTCTCAATCTTGTTTCAGGATGTATTGTGTTCTACGC
AGACTTGCGACGTACCAGGCGCCACCCGCGCAACTTGGCCGTCAAGCCCT
CTCTTCCCC
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protein sequence of rna9380

>rna9380-protein ID=rna9380-protein|Name=rna9380|organism=Nannochloropsis gaditana|type=polypeptide|length=298bp
MAWIYAKVVSYIALPVRLVFDVNPMLDIEPFIVVGHAFFSFFAQLSLRIS
SFKTLIRRDVQAMSSSNPSSSHYYVAVPADGTKSTTSTSTATTAAASSSP
ATRVLRPKRRCFSLSRAFILLLLLGLLLFFLVPRRPIVRYQSSTLSLDES
TSSVTLSQLFSYYNPNYYTVQWNNLHIQVEDQESATPLGYGWHNASFPVR
ALSSRSSAVNITITAAFSELAPLIKAQCAEKNYVTLASYGTVNAWIWSQN
LGAIRIGPFTEVIDCGGAATMQYKRKVQDIRQEKKQERHQERLLPRWL
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mRNA from alignment at KK037253.1:114522..116113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9380 ID=rna9380|Name=rna9380|organism=Nannochloropsis gaditana|type=mRNA|length=1592bp|location=Sequence derived from alignment at KK037253.1:114522..116113- (Nannochloropsis gaditana)
CATGGGACTGGCACGTCCTAACGAGAACAGTGCGGTACAGGGTATCACCC
CGTCGATTGACCAACGCTTGAGTCCCTCTATGAATATGCGCCCATGAAAT
GTGCCCTCTTTCTTTTCAAGCGCTTCCTCTCCTCAACACTGGCCACGATG
GTCGTCCTGCCGCTCCGTGAGAGGACCAGACTTTTCGACAAGCTTTCATC
AGAAAAACGACGTGCCCATGGCATGGATCTATGCTAAAGTGGTGTCCTAT
ATAGCTTTGCCTGTACGTTTAGTTTTTGATGTCAACCCGATGTTGGACAT
TGAACCTTTCATAGTTGTGGGCCATGCGTTCTTTTCATTCTTCGCCCAAC
TTTCACTCCGGATCTCATCGTTTAAAACCCTCATACGGCGCGATGTACAG
GCGATGTCCTCCTCAAATCCTTCGTCTTCCCACTACTATGTGGCTGTGCC
GGCAGATGGGACCAAAAGCACCACTTCCACCTCCACTGCCACAACGGCAG
CTGCTTCTTCCTCACCCGCGACTCGTGTTCTCCGACCCAAGCGCCGTTGT
TTCAGCTTGAGCAGGGCATTTATCCTCCTTCTTCTCCTCGGCCTTTTGCT
CTTTTTCCTTGTACCCCGACGTCCAATCGTGCGCTACCAAAGCTCCACCC
TTTCTCTGGATGAGAGCACCTCAAGCGTCACGTTGTCGCAGCTATTTTCC
TACTACAATCCCAACTACTACACCGTGTACGTTTTATGCAGCTTGATCTC
AGCATTTCGCCTTTATGTAGTCTCTCAGCTTTGTCTGAATCTTGAACGGA
TTTTCGGGGACAATAAACGTTAAATTGTTTGTGTCTTAAGCTCTCTTCCT
TACCCCTTGTCAGGCAATGGAACAACCTGCACATTCAGGTGGAAGATCAA
GAAAGTGCGACACCGCTTGGGTATGGCTGGCACAATGCCTCTTTCCCCGT
TCGGGCCCTGTCTTCCCGCTCTTCGGCTGTGAATATCACCATCACCGCTG
CGTTCTCCGAGCTTGCGCCTCTAATAAAAGCACAGTGCGCGGAGAAAAAC
TACGTCACTTTAGCGTCGTACGGTAAGAAGGGGGAATTGTAAAGAATCCG
AAGGAGATCGGAGGATGGGCGCGGGTGGTGGAGGGAAGTCGGGGCCCTGA
AAAGCGTGAAAGTTTGTCGTTGTTACACGCACTGTTTGGAAGGTCTAGAC
GATCGATCAACCTGGCTTCCTTTCCGCTTTCTCGCACAAAAGGGACAGTC
AATGCATGGATTTGGAGTCAAAATTTGGGGGCGATTCGTATCGGCCCCTT
CACCGAAGTTATCGATTGCGGGGGGGCAGCAACCATGCAGTACAAACGCA
AAGTACAGGACATACGACAGGAGAAAAAGCAAGAAAGGCATCAGGAAAGG
CTGCTACCTCGATGGTTGTAATATGTATCCTAAATTTTGGCATCTAGTGT
GTTGTTTGTCCATAGTTTTTGTAAATACATTGCTCATTGTACGGATCGGC
GAACTGTCGAACGACAATCAAGCAGCTAGACATATGTACTTGCGGGAGCC
TTGATCTGATTCTTTAAAGGGAATAATCTGTTAATGCTGCCG
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Coding sequence (CDS) from alignment at KK037253.1:114522..116113-

>rna9380 ID=rna9380|Name=rna9380|organism=Nannochloropsis gaditana|type=CDS|length=2691bp|location=Sequence derived from alignment at KK037253.1:114522..116113- (Nannochloropsis gaditana)
GGACAGTCAATGCATGGATTTGGAGTCAAAATTTGGGGGCGATTCGTATC
GGCCCCTTCACCGAAGTTATCGATTGCGGGGGGGCAGCAACCATGCAGTA
CAAACGCAAAGTACAGGACATACGACAGGAGAAAAAGCAAGAAAGGCATC
AGGAAAGGCTGCTACCTCGATGGTTGTAAGCAATGGAACAACCTGCACAT
TCAGGTGGAAGATCAAGAAAGTGCGACACCGCTTGGGTATGGCTGGCACA
ATGCCTCTTTCCCCGTTCGGGCCCTGTCTTCCCGCTCTTCGGCTGTGAAT
ATCACCATCACCGCTGCGTTCTCCGAGCTTGCGCCTCTAATAAAAGCACA
GTGCGCGGAGAAAAACTACGTCACTTTAGCGTCGTACGATGGCATGGATC
TATGCTAAAGTGGTGTCCTATATAGCTTTGCCTGTACGTTTAGTTTTTGA
TGTCAACCCGATGTTGGACATTGAACCTTTCATAGTTGTGGGCCATGCGT
TCTTTTCATTCTTCGCCCAACTTTCACTCCGGATCTCATCGTTTAAAACC
CTCATACGGCGCGATGTACAGGCGATGTCCTCCTCAAATCCTTCGTCTTC
CCACTACTATGTGGCTGTGCCGGCAGATGGGACCAAAAGCACCACTTCCA
CCTCCACTGCCACAACGGCAGCTGCTTCTTCCTCACCCGCGACTCGTGTT
CTCCGACCCAAGCGCCGTTGTTTCAGCTTGAGCAGGGCATTTATCCTCCT
TCTTCTCCTCGGCCTTTTGCTCTTTTTCCTTGTACCCCGACGTCCAATCG
TGCGCTACCAAAGCTCCACCCTTTCTCTGGATGAGAGCACCTCAAGCGTC
ACGTTGTCGCAGCTATTTTCCTACTACAATCCCAACTACTACACCGTGGA
CAGTCAATGCATGGATTTGGAGTCAAAATTTGGGGGCGATTCGTATCGGC
CCCTTCACCGAAGTTATCGATTGCGGGGGGGCAGCAACCATGCAGTACAA
ACGCAAAGTACAGGACATACGACAGGAGAAAAAGCAAGAAAGGCATCAGG
AAAGGCTGCTACCTCGATGGTTGTAAGCAATGGAACAACCTGCACATTCA
GGTGGAAGATCAAGAAAGTGCGACACCGCTTGGGTATGGCTGGCACAATG
CCTCTTTCCCCGTTCGGGCCCTGTCTTCCCGCTCTTCGGCTGTGAATATC
ACCATCACCGCTGCGTTCTCCGAGCTTGCGCCTCTAATAAAAGCACAGTG
CGCGGAGAAAAACTACGTCACTTTAGCGTCGTACGATGGCATGGATCTAT
GCTAAAGTGGTGTCCTATATAGCTTTGCCTGTACGTTTAGTTTTTGATGT
CAACCCGATGTTGGACATTGAACCTTTCATAGTTGTGGGCCATGCGTTCT
TTTCATTCTTCGCCCAACTTTCACTCCGGATCTCATCGTTTAAAACCCTC
ATACGGCGCGATGTACAGGCGATGTCCTCCTCAAATCCTTCGTCTTCCCA
CTACTATGTGGCTGTGCCGGCAGATGGGACCAAAAGCACCACTTCCACCT
CCACTGCCACAACGGCAGCTGCTTCTTCCTCACCCGCGACTCGTGTTCTC
CGACCCAAGCGCCGTTGTTTCAGCTTGAGCAGGGCATTTATCCTCCTTCT
TCTCCTCGGCCTTTTGCTCTTTTTCCTTGTACCCCGACGTCCAATCGTGC
GCTACCAAAGCTCCACCCTTTCTCTGGATGAGAGCACCTCAAGCGTCACG
TTGTCGCAGCTATTTTCCTACTACAATCCCAACTACTACACCGTGGACAG
TCAATGCATGGATTTGGAGTCAAAATTTGGGGGCGATTCGTATCGGCCCC
TTCACCGAAGTTATCGATTGCGGGGGGGCAGCAACCATGCAGTACAAACG
CAAAGTACAGGACATACGACAGGAGAAAAAGCAAGAAAGGCATCAGGAAA
GGCTGCTACCTCGATGGTTGTAAGCAATGGAACAACCTGCACATTCAGGT
GGAAGATCAAGAAAGTGCGACACCGCTTGGGTATGGCTGGCACAATGCCT
CTTTCCCCGTTCGGGCCCTGTCTTCCCGCTCTTCGGCTGTGAATATCACC
ATCACCGCTGCGTTCTCCGAGCTTGCGCCTCTAATAAAAGCACAGTGCGC
GGAGAAAAACTACGTCACTTTAGCGTCGTACGATGGCATGGATCTATGCT
AAAGTGGTGTCCTATATAGCTTTGCCTGTACGTTTAGTTTTTGATGTCAA
CCCGATGTTGGACATTGAACCTTTCATAGTTGTGGGCCATGCGTTCTTTT
CATTCTTCGCCCAACTTTCACTCCGGATCTCATCGTTTAAAACCCTCATA
CGGCGCGATGTACAGGCGATGTCCTCCTCAAATCCTTCGTCTTCCCACTA
CTATGTGGCTGTGCCGGCAGATGGGACCAAAAGCACCACTTCCACCTCCA
CTGCCACAACGGCAGCTGCTTCTTCCTCACCCGCGACTCGTGTTCTCCGA
CCCAAGCGCCGTTGTTTCAGCTTGAGCAGGGCATTTATCCTCCTTCTTCT
CCTCGGCCTTTTGCTCTTTTTCCTTGTACCCCGACGTCCAATCGTGCGCT
ACCAAAGCTCCACCCTTTCTCTGGATGAGAGCACCTCAAGCGTCACGTTG
TCGCAGCTATTTTCCTACTACAATCCCAACTACTACACCGT
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Synonyms
Publications