EWM21362.1, cds9311 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21362.1 vs. NCBI_GenBank
Match: gi|585101549|gb|EWM21362.1| (hypothetical protein Naga_100666g1 [Nannochloropsis gaditana]) HSP 1 Score: 253.447 bits (646), Expect = 2.215e-85 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query: 1 MKNIQRCLSIAVLYCMVLISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVCVSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVAIPLALRPGTEAFEEERDRLEEMRRQRGQSEEE 126
MKNIQRCLSIAVLYCMVLISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVCVSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVAIPLALRPGTEAFEEERDRLEEMRRQRGQSEEE
Sbjct: 1 MKNIQRCLSIAVLYCMVLISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVCVSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVAIPLALRPGTEAFEEERDRLEEMRRQRGQSEEE 126
BLAST of EWM21362.1 vs. NCBI_GenBank
Match: gi|553177764|ref|XP_005852497.1| (hypothetical protein NGA_0710200 [Nannochloropsis gaditana CCMP526] >gi|422296037|gb|EKU23336.1| hypothetical protein NGA_0710200 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 184.111 bits (466), Expect = 5.890e-58 Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MKNIQRCLSIAVLYCMVLISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVCVSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVA 94
MKNIQRCLSIAVLYCM+LISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVC+SVAAAADEYEYGAVAAPGWVLPVGALLTLGLAV+
Sbjct: 1 MKNIQRCLSIAVLYCMILISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVCLSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVS 94
BLAST of EWM21362.1 vs. NCBI_GenBank
Match: gi|585112011|gb|EWM29472.1| (hypothetical protein Naga_100714g2 [Nannochloropsis gaditana]) HSP 1 Score: 60.077 bits (144), Expect = 2.290e-8 Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 0
Query: 7 CLSIAVL-YCMVLISPTLAFLPP-LSTASSKFRVASSHRAPRTTSLKA-ASFSDVCVSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVAIPLALRPGTEAFE 107
CL IA L + ++P +F P + T + ++ A T++L A +DV V A +Y +G+V APGW LPV A+ TL V IPL L+PG +AF
Sbjct: 5 CLFIASLGFASAFLAPVPSFTPTRIRTTQTSMMLSPEDIATGTSNLLAIVKENDVFVKNAG---DYPWGSVQAPGWALPVAAIATLSFGVIIPLVLKPGVDAFN 105
BLAST of EWM21362.1 vs. NCBI_GenBank
Match: gi|224007058|ref|XP_002292489.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972131|gb|EED90464.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 54.299 bits (129), Expect = 5.569e-7 Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 0
Query: 15 CMVLISPTLAFLPPLSTASSKF-RVASSHRAPRTTSLKAASF---SDVCVSVAAAADEYEYGAVAAPGWV-LPVGALLTLGLAVAIPLALRPGTEAFEEERDRLE 114
++ ++ T AF+P + ++ RV ++ + TT++ AS + V++AA D YEYGAVAAPG + L VG + L A+P+ L PG +AF E ++R E
Sbjct: 8 ALLTLATTNAFVPSTPSNTAPLTRVNATPLSKLTTAITTASIAIATSPLVAIAADEDGYEYGAVAAPGGIGLAVGLGVVAILTAAVPVILAPGEDAFNEMKERDE 112 The following BLAST results are available for this feature:
BLAST of EWM21362.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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