EWM21362.1, cds9311 (CDS) Nannochloropsis gaditana

Overview
NameEWM21362.1
Unique Namecds9311
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:7109..7247 -
Alignment locationKK037253.1:6922..7014 -
Alignment locationKK037253.1:6802..6845 -
Alignment locationKK037253.1:6515..6619 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21362.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100666g1.10299.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:7109..7247 -
KK037253.1supercontigKK037253.1:6922..7014 -
KK037253.1supercontigKK037253.1:6802..6845 -
KK037253.1supercontigKK037253.1:6515..6619 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21362.1 vs. NCBI_GenBank
Match: gi|585101549|gb|EWM21362.1| (hypothetical protein Naga_100666g1 [Nannochloropsis gaditana])

HSP 1 Score: 253.447 bits (646), Expect = 2.215e-85
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query:    1 MKNIQRCLSIAVLYCMVLISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVCVSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVAIPLALRPGTEAFEEERDRLEEMRRQRGQSEEE 126
            MKNIQRCLSIAVLYCMVLISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVCVSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVAIPLALRPGTEAFEEERDRLEEMRRQRGQSEEE
Sbjct:    1 MKNIQRCLSIAVLYCMVLISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVCVSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVAIPLALRPGTEAFEEERDRLEEMRRQRGQSEEE 126          
BLAST of EWM21362.1 vs. NCBI_GenBank
Match: gi|553177764|ref|XP_005852497.1| (hypothetical protein NGA_0710200 [Nannochloropsis gaditana CCMP526] >gi|422296037|gb|EKU23336.1| hypothetical protein NGA_0710200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 184.111 bits (466), Expect = 5.890e-58
Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 0
Query:    1 MKNIQRCLSIAVLYCMVLISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVCVSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVA 94
            MKNIQRCLSIAVLYCM+LISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVC+SVAAAADEYEYGAVAAPGWVLPVGALLTLGLAV+
Sbjct:    1 MKNIQRCLSIAVLYCMILISPTLAFLPPLSTASSKFRVASSHRAPRTTSLKAASFSDVCLSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVS 94          
BLAST of EWM21362.1 vs. NCBI_GenBank
Match: gi|585112011|gb|EWM29472.1| (hypothetical protein Naga_100714g2 [Nannochloropsis gaditana])

HSP 1 Score: 60.077 bits (144), Expect = 2.290e-8
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 0
Query:    7 CLSIAVL-YCMVLISPTLAFLPP-LSTASSKFRVASSHRAPRTTSLKA-ASFSDVCVSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVAIPLALRPGTEAFE 107
            CL IA L +    ++P  +F P  + T  +   ++    A  T++L A    +DV V  A    +Y +G+V APGW LPV A+ TL   V IPL L+PG +AF 
Sbjct:    5 CLFIASLGFASAFLAPVPSFTPTRIRTTQTSMMLSPEDIATGTSNLLAIVKENDVFVKNAG---DYPWGSVQAPGWALPVAAIATLSFGVIIPLVLKPGVDAFN 105          
BLAST of EWM21362.1 vs. NCBI_GenBank
Match: gi|224007058|ref|XP_002292489.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972131|gb|EED90464.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 54.299 bits (129), Expect = 5.569e-7
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 0
Query:   15 CMVLISPTLAFLPPLSTASSKF-RVASSHRAPRTTSLKAASF---SDVCVSVAAAADEYEYGAVAAPGWV-LPVGALLTLGLAVAIPLALRPGTEAFEEERDRLE 114
             ++ ++ T AF+P   + ++   RV ++  +  TT++  AS    +   V++AA  D YEYGAVAAPG + L VG  +   L  A+P+ L PG +AF E ++R E
Sbjct:    8 ALLTLATTNAFVPSTPSNTAPLTRVNATPLSKLTTAITTASIAIATSPLVAIAADEDGYEYGAVAAPGGIGLAVGLGVVAILTAAVPVILAPGEDAFNEMKERDE 112          
The following BLAST results are available for this feature:
BLAST of EWM21362.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585101549|gb|EWM21362.1|2.215e-85100.00hypothetical protein Naga_100666g1 [Nannochloropsi... [more]
gi|553177764|ref|XP_005852497.1|5.890e-5896.81hypothetical protein NGA_0710200 [Nannochloropsis ... [more]
gi|585112011|gb|EWM29472.1|2.290e-837.50hypothetical protein Naga_100714g2 [Nannochloropsi... [more]
gi|224007058|ref|XP_002292489.1|5.569e-736.19predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9341rna9341Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications