rna9340, rna9340 (mRNA) Nannochloropsis gaditana

Overview
Namerna9340
Unique Namerna9340
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length836
Alignment locationKK037253.1:1981..3437 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101560g2.9851.mrna
Orig protein idgnl|cribi|Naga_101560g2.9851
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:1981..3437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101560g2gene9057Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9340rna9340-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21363.1cds9310Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9340 ID=rna9340|Name=rna9340|organism=Nannochloropsis gaditana|type=mRNA|length=836bp
TCGACTTACATCGAGCATACCATCGCACAAACAGAGGATCCCATACACGC
ACGTCATGATGACCACCTTTTGCACTTTGTTCCTGGACGATGCAATGTGA
TCATTTTCCGGGCGGGGAGGGGGGAGAGAAGGATGATGACGCCATCACTT
TTCATGTTGATAATAGAAAGACATCCGTCCTCAACTTCCCTGATTTATGT
GAACAATAGCATGGCCGAACATCGTTGATTGTCCCCTTTTGTGTGGTGTC
GGGATGATTCACATCCGCAAAAAGAATGGGTGTGGCTGGGTTCAGCCCGT
GCACGTGAAACGCGCCGTCTTTCCTGCTGATGCTAAAAAGGACACTGTGA
GAGAGCATTTTATCGACCCACAGGTTGCCCACAGCAACCGACCGATTCAC
GGCGTAAGTCGTCGGATGCAACGTGACCATGTTCAGCCGTCTCCACGACC
GTGTGAAGGAGGCACTCGTGGAGGAAAGTGCGAGTGAGTACGAGGACGCG
TTGGAGGAGGGGGCTGAGGAGGAAGAGGGATGGGAGGAACAGTCATGGAC
AATCCAGGGCAAGCTCGCGTCCACCGGCTCCGACCACCCTCCCTGGACGT
CGTCGCCCGTTGCAACCGGGGTGACGCCGGGAAAAAAAAGCGACGGCTGG
GGCGGAGGGTGGGGGGAGGCTTGTCGGGCGGCTGAGAATCCGAAGAGTCC
CAGCATGGAGAGGGGGATAGAGAGGAAGCGAGGGCGGTGGCGTGGTGTCG
AGCGACTTGTCCCGGCCTTTGACGACCCATCGAGGAAGAGCCCGTTGTCG
GTGGCGGTGGTGAACGTGGTGGCCACGGTCGTGGGT
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protein sequence of rna9340

>rna9340-protein ID=rna9340-protein|Name=rna9340|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MTQLNHHNTQTAKRIMGTQPMDPGHPKKVLCSGGLPPPFSACKWTLEELL
VKQREPISSSASSCTSRALLLTLEFADKRSMTHMLGRISAFSEGKANKGL
KSEAKAGDASRGYYGHNFPLTVLEDFSQIQGASGGKNGARKGGEEGGLAR
GEQDLVDLCQKLGLMKKTKGDGPRGSKGHGALGGKGGQASSSYLIAHLKH
DLGTRQHELCHARYFLDPTYRQACLTAWEALSEKHRDYLSAFLSRLGYHE
AVHADEFQAFALTEKANFWGVRIDVAWPDVIGGGEGRK
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mRNA from alignment at KK037253.1:1981..3437+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9340 ID=rna9340|Name=rna9340|organism=Nannochloropsis gaditana|type=mRNA|length=1457bp|location=Sequence derived from alignment at KK037253.1:1981..3437+ (Nannochloropsis gaditana)
ACGCAACTGATGAAGACAGGGCATTAATCTGTTCCTATGCCATTGTATGC
CTACATGCTCGCGCCGCTTGGGCACGTCTTGAGTGGATTAGGGTTGGGAC
TGCACGTTTTTCCTACCTCACAGTGTCCTTTTTAGCATCAGCAGGAAAGA
CGGCGCGTTTCACGTGCACGGGCTGAACCCAGCCACACCCATTCTTTTTG
CGGATGTGAATCATCCCGACACCACACAAAAGGGGACAATCAACGATGTT
CGGCCATGCTATTGTTCACATAAATCAGGGAAGTTGAGGACGGATGTCTT
TCTATTATCAACATGAAAAGTGATGGCGTCAtcatccttctctcccccct
ccccgcccggaAAATGATCACATTGCATCGTCCAGGAACAAAGTGCAAAA
GGTGGTCATCATGACGTGCGTGTATGGGATCCTCTGTTTGTGCGATGGTA
TGCTCGATGTAAGTCGATTCCTTCTTTGTCAGGCTTTTATCGCAGGAAAT
ACTTGGCTCCGAGGCCCCTCTCGCATGGCGTTCAGAGGATACGACACGAT
GCTGGCTGGCCCGCATTGTGCGtgagaaagaaagcacaAAATGACGCAGC
TAAACCACCACAACACACAAACAGCAAAAAGGATAATGGGAACGCAGCCC
ATGGACCCGGGCCACCCCAAGAAAGTGCTCTGCAGTggtggcctccctcc
accctttaGTGCATGTAAATGGACGCTTGAAGAGCTTCTCGTAAAACAAA
GAGAGccaatttcctcctccgcctcctcgtgcaCCTCGAGAGCACTCCTC
CTCACACTGGAATTCGCCGACAAGCGGAGCATGACGCACATGTTGGGCCG
CATCAGCGCTTTCAGTGAGGGGAAAGCGAACAAAGGTCTCAAAAGTgagg
ccaaggcgggcgACGCCAGCCGCGGTTATTACGGGCATAATTTCCCCTTG
ACAGTGCTGGAGGATTTCTCCCAGATCCAGGGGGCGAGCGGTGGGAAGAA
CGGGgcgcgaaagggaggggaggagggcggtctGGCCCGGGGCGAGCAGG
ATCTGGTCGACTTATGCCAAAAGCTGGGTTTGATGAAGAAAACAAAGGGT
GACGGGCCcagaggaagcaaggggcACGGcgcgctgggagggaagggcgg
acaAGCATCTTCTTCCTACCTGATCGCGCATCTAAAGCACGACCTCGGCA
CCCGGCAGCACGAGCTTTGTCATGCCCGTTACTTTTTAGACCCGACCTAC
CGCCAGGCCTGCCTAACGGCTTGGGAAGCTCTCTCCGAAAAACACCGAGA
CTACCTGTCGGCGTTTTTGTCCCGGCTGGGTTACCACGAGGCGGTGCACG
CGGACGAGTTCCAGGCTTTTGCCTTGACGGAAAAAGCGAATTTTTGGGGG
GTGCGCATTGATGTGGCGTGGCCCGATGTgattggagggggggaggggag
gaagtga
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Coding sequence (CDS) from alignment at KK037253.1:1981..3437+

>rna9340 ID=rna9340|Name=rna9340|organism=Nannochloropsis gaditana|type=CDS|length=867bp|location=Sequence derived from alignment at KK037253.1:1981..3437+ (Nannochloropsis gaditana)
ATGACGCAGCTAAACCACCACAACACACAAACAGCAAAAAGGATAATGGG
AACGCAGCCCATGGACCCGGGCCACCCCAAGAAAGTGCTCTGCAGTggtg
gcctccctccaccctttaGTGCATGTAAATGGACGCTTGAAGAGCTTCTC
GTAAAACAAAGAGAGccaatttcctcctccgcctcctcgtgcaCCTCGAG
AGCACTCCTCCTCACACTGGAATTCGCCGACAAGCGGAGCATGACGCACA
TGTTGGGCCGCATCAGCGCTTTCAGTGAGGGGAAAGCGAACAAAGGTCTC
AAAAGTgaggccaaggcgggcgACGCCAGCCGCGGTTATTACGGGCATAA
TTTCCCCTTGACAGTGCTGGAGGATTTCTCCCAGATCCAGGGGGCGAGCG
GTGGGAAGAACGGGgcgcgaaagggaggggaggagggcggtctGGCCCGG
GGCGAGCAGGATCTGGTCGACTTATGCCAAAAGCTGGGTTTGATGAAGAA
AACAAAGGGTGACGGGCCcagaggaagcaaggggcACGGcgcgctgggag
ggaagggcggacaAGCATCTTCTTCCTACCTGATCGCGCATCTAAAGCAC
GACCTCGGCACCCGGCAGCACGAGCTTTGTCATGCCCGTTACTTTTTAGA
CCCGACCTACCGCCAGGCCTGCCTAACGGCTTGGGAAGCTCTCTCCGAAA
AACACCGAGACTACCTGTCGGCGTTTTTGTCCCGGCTGGGTTACCACGAG
GCGGTGCACGCGGACGAGTTCCAGGCTTTTGCCTTGACGGAAAAAGCGAA
TTTTTGGGGGGTGCGCATTGATGTGGCGTGGCCCGATGTgattggagggg
gggaggggaggaagtga
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Synonyms
Publications