rna9338, rna9338 (mRNA) Nannochloropsis gaditana

Overview
Namerna9338
Unique Namerna9338
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length522
Alignment locationKK037252.1:429216..430098 +

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Properties
Property NameValue
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100932g2.7813.mrna
Orig protein idgnl|cribi|Naga_100932g2.7813
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:429216..430098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100932g2gene9054Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9338rna9338-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21366.1cds9308Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9338 ID=rna9338|Name=rna9338|organism=Nannochloropsis gaditana|type=mRNA|length=522bp
ACAGGCACGCTTGCTATTTTCAGACGAAGTTTCGCCGCGCCCTCCCCAAA
ACCATTCGCCCGCCACCCTAGCGGCATCTTTGCGCCGTTGATCGGCGGGG
GAAGGAGTGGACGCACTGGGTGGTCAGTGGCCTATGCAGCAACCACGCCG
ACGGACGTCGTACCCACCGCCGCCCCCTATGTCCTATCCACGACCCCTAT
ATCACCGCTACGAAGCACGGCACCCCCATGCACCTCGACATTACCGCGTG
CCGCCACCACCACAAGCTTCCCCCGGATGGGTAACCGCCACCAGCCACGC
CCCACGGGAACTGGTTGGGCTCCCCTACCCCGACTATCCTCGCGAGGGAG
AGTGGGTACTGTCGTTGGAGCAGCTTTACCTGCAGTCTCCTTCCCGCCGA
GACGGTCTCTCCGATGCCCAAGAACGGGAGCGACGACATGATGGGGCTGC
CTTGATCGACAGAATGGCGCGTCGGCTAGATCTGTAGGGGGGGAGGGAGG
GAGGGAAGGAGGGAGGAAGGGA
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protein sequence of rna9338

>rna9338-protein ID=rna9338-protein|Name=rna9338|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MSPGLPTIGPNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEF
EQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRTRRCR
KNEVHKKEGCNRCKIRKPTKKEQRLVQRWKPLPAVCGIEILKNASSP
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mRNA from alignment at KK037252.1:429216..430098+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9338 ID=rna9338|Name=rna9338|organism=Nannochloropsis gaditana|type=mRNA|length=883bp|location=Sequence derived from alignment at KK037252.1:429216..430098+ (Nannochloropsis gaditana)
ATGTCACCGGGTCTACCCACAATAGGGCCCAATCGCGAGGCTCTTCGTCT
CTACCGAGGTAGGTaactcccccttctctctttcagGATGTTCCGATGCA
CTCCTATCTTGTCTCGGTGCTGCCtatctcccccctttcttcctttccgg
ATGGTGTCTAGGTATCTTGCTGgcatgccccttccctcacgTCGATCTGT
CCCCCCTGGCACCCGCCACGGCAGAAATTCTTCGCACCGCCCGACGCTTC
TACTGGCCCAacgacgagggagagcccTGGCGGGAGGTGCTGAGACGCGA
GGCCCGGAAGGAGTTCGAACAGGCGCGGGCCGAGAAGGATCCGTTGATCa
tcgcccgcctcctggtGGTCGGCAGGGACTGCGTCATGCAAACACAGTAT
AAGGTGCGAGCTCCGAggtggacagggagggagggagggagggagggagg
gagggagggaggaaggaaggaaggggaacggcTGGACCGGTCGTGGGCAG
AGAAGCGCCTGACATCGGAGCCCACTTACTTCCTTTATTATTGTCTACAT
TGTTTGGCCCGTAAAGTTCGACATGACCCAGCAAAAGATCAGAGAAAATG
TGGACAAGACTCGAACACGGTGAAACGGGTTTTGGGTTTCGGCTTGGCAA
CGGaattttgaaaattttgGGTCGCGCGAGCGGCCTTGCTGTGTGCAGCC
AGCGGGACTGAATAGCCATGAAAAAGGAGCCGATGCCGGAAAAACGAGGT
gcacaagaaggaagggtgTAACAGGTGTAAAATACGAAAACCCACCAAAA
AGGAACAAAGGCTTGTACAGAGGTGGAAACCGTTACCTGCGGTCTGCGGG
ATcgaaattttgaaaaatgcATCGTCCCCTTAG
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Coding sequence (CDS) from alignment at KK037252.1:429216..430098+

>rna9338 ID=rna9338|Name=rna9338|organism=Nannochloropsis gaditana|type=CDS|length=1776bp|location=Sequence derived from alignment at KK037252.1:429216..430098+ (Nannochloropsis gaditana)
ATGTCACCGGGTCTACCCACAATAGGGCCCAATCGCGAGGCTCTTCGTCT
CTACCGAGAAATTCTTCGCACCGCCCGACGCTTCTACTGGCCCAacgacg
agggagagcccTGGCGGGAGGTGCTGAGACGCGAGGCCCGGAAGGAGTTC
GAACAGGCGCGGGCCGAGAAGGATCCGTTGATCatcgcccgcctcctggt
GGTCGGCAGGGACTGCGTCATGCAAACACAGTATAAGTTCGACATGACCC
AGCAAAAGATCAGAGAAAATGTGGACAAGACTCGAACACGCCGATGCCGG
AAAAACGAGGTgcacaagaaggaagggtgTAACAGGTGTAAAATACGAAA
ACCCACCAAAAAGGAACAAAGGCTTGTACAGAGGTGGAAACCGTTACCTG
CGGTCTGCGGGATcgaaattttgaaaaatgcATCGTCCCCTTAGATGTCA
CCGGGTCTACCCACAATAGGGCCCAATCGCGAGGCTCTTCGTCTCTACCG
AGAAATTCTTCGCACCGCCCGACGCTTCTACTGGCCCAacgacgagggag
agcccTGGCGGGAGGTGCTGAGACGCGAGGCCCGGAAGGAGTTCGAACAG
GCGCGGGCCGAGAAGGATCCGTTGATCatcgcccgcctcctggtGGTCGG
CAGGGACTGCGTCATGCAAACACAGTATAAGTTCGACATGACCCAGCAAA
AGATCAGAGAAAATGTGGACAAGACTCGAACACGCCGATGCCGGAAAAAC
GAGGTgcacaagaaggaagggtgTAACAGGTGTAAAATACGAAAACCCAC
CAAAAAGGAACAAAGGCTTGTACAGAGGTGGAAACCGTTACCTGCGGTCT
GCGGGATcgaaattttgaaaaatgcATCGTCCCCTTAGATGTCACCGGGT
CTACCCACAATAGGGCCCAATCGCGAGGCTCTTCGTCTCTACCGAGAAAT
TCTTCGCACCGCCCGACGCTTCTACTGGCCCAacgacgagggagagcccT
GGCGGGAGGTGCTGAGACGCGAGGCCCGGAAGGAGTTCGAACAGGCGCGG
GCCGAGAAGGATCCGTTGATCatcgcccgcctcctggtGGTCGGCAGGGA
CTGCGTCATGCAAACACAGTATAAGTTCGACATGACCCAGCAAAAGATCA
GAGAAAATGTGGACAAGACTCGAACACGCCGATGCCGGAAAAACGAGGTg
cacaagaaggaagggtgTAACAGGTGTAAAATACGAAAACCCACCAAAAA
GGAACAAAGGCTTGTACAGAGGTGGAAACCGTTACCTGCGGTCTGCGGGA
TcgaaattttgaaaaatgcATCGTCCCCTTAGATGTCACCGGGTCTACCC
ACAATAGGGCCCAATCGCGAGGCTCTTCGTCTCTACCGAGAAATTCTTCG
CACCGCCCGACGCTTCTACTGGCCCAacgacgagggagagcccTGGCGGG
AGGTGCTGAGACGCGAGGCCCGGAAGGAGTTCGAACAGGCGCGGGCCGAG
AAGGATCCGTTGATCatcgcccgcctcctggtGGTCGGCAGGGACTGCGT
CATGCAAACACAGTATAAGTTCGACATGACCCAGCAAAAGATCAGAGAAA
ATGTGGACAAGACTCGAACACGCCGATGCCGGAAAAACGAGGTgcacaag
aaggaagggtgTAACAGGTGTAAAATACGAAAACCCACCAAAAAGGAACA
AAGGCTTGTACAGAGGTGGAAACCGTTACCTGCGGTCTGCGGGATcgaaa
ttttgaaaaatgcATCGTCCCCTTAG
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Synonyms
Publications