EWM21366.1, cds9308 (CDS) Nannochloropsis gaditana

Overview
NameEWM21366.1
Unique Namecds9308
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:429216..429273 +
Alignment locationKK037252.1:429440..429618 +
Alignment locationKK037252.1:429782..429834 +
Alignment locationKK037252.1:429945..430098 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21366.1
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100932g2.7813.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:429216..429273 +
KK037252.1supercontigKK037252.1:429440..429618 +
KK037252.1supercontigKK037252.1:429782..429834 +
KK037252.1supercontigKK037252.1:429945..430098 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|585101559|gb|EWM21366.1| (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 300.056 bits (767), Expect = 3.861e-103
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query:    1 MSPGLPTIGPNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRTRRCRKNEVHKKEGCNRCKIRKPTKKEQRLVQRWKPLPAVCGIEILKNASSP 147
            MSPGLPTIGPNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRTRRCRKNEVHKKEGCNRCKIRKPTKKEQRLVQRWKPLPAVCGIEILKNASSP
Sbjct:    1 MSPGLPTIGPNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRTRRCRKNEVHKKEGCNRCKIRKPTKKEQRLVQRWKPLPAVCGIEILKNASSP 147          
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|168024109|ref|XP_001764579.1| (predicted protein [Physcomitrella patens] >gi|162684157|gb|EDQ70561.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 93.9745 bits (232), Expect = 8.115e-22
Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 0
Query:    2 SPGLPTIGPNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKI 87
            S GL T    REAL LYREILRT R F W N+ G PWR++LR   R EFEQAR E DP +IARLLVVGRD V     KF +  +++
Sbjct:   38 SAGLTT--SRREALALYREILRTTRLFTWTNEHGVPWRDLLRDSTRLEFEQARYETDPEVIARLLVVGRDAVQAAIEKFSVKAEEL 121          
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|242042317|ref|XP_002468553.1| (uncharacterized protein LOC8085662 [Sorghum bicolor] >gi|92429672|gb|ABE77205.1| putative complex 1 protein, LYR family [Sorghum bicolor] >gi|241922407|gb|EER95551.1| hypothetical protein SORBI_3001G513100 [Sorghum bicolor])

HSP 1 Score: 93.2041 bits (230), Expect = 2.345e-21
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 0
Query:   12 REALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKF-DMTQQKI 87
            REAL LYR+ILR AR F WP+D G PWREVLR  AR+EFE+AR E+DP ++ARLL+ GRD V Q   +  D +++ I
Sbjct:   73 REALALYRDILRAARLFAWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQALDRLADASRRAI 149          
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|573923567|ref|XP_006649359.1| (PREDICTED: uncharacterized protein LOC102714990 [Oryza brachyantha])

HSP 1 Score: 92.0485 bits (227), Expect = 6.415e-21
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 0
Query:   12 REALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRE 89
            REAL LYR+ILR  R F WP+D G PWREVLR  AR+EFE+AR E+DP ++ARLL+ GRD V Q   +     +++ E
Sbjct:   71 REALGLYRDILRVTRLFEWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQALDRLAEASRRVVE 148          
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|1002253018|ref|XP_015630745.1| (PREDICTED: uncharacterized protein LOC4331544 [Oryza sativa Japonica Group] >gi|108706063|gb|ABF93858.1| Complex 1 protein containing protein, expressed [Oryza sativa Japonica Group] >gi|113547366|dbj|BAF10809.1| Os03g0136600 [Oryza sativa Japonica Group] >gi|125542313|gb|EAY88452.1| hypothetical protein OsI_09917 [Oryza sativa Indica Group] >gi|125584836|gb|EAZ25500.1| hypothetical protein OsJ_09323 [Oryza sativa Japonica Group] >gi|215692999|dbj|BAG88419.1| unnamed protein product [Oryza sativa Japonica Group] >gi|937907266|dbj|BAS82186.1| Os03g0136600 [Oryza sativa Japonica Group])

HSP 1 Score: 92.0485 bits (227), Expect = 7.904e-21
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 0
Query:   12 REALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRE 89
            REAL LYR+ILR  R F WP+D G PWREVLR  AR+EFE+AR E+DP ++ARLL+ GRD V Q   +     +++ E
Sbjct:   72 REALGLYRDILRVTRLFEWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQALDRLAEASRRMVE 149          
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|118360513|ref|XP_001013490.1| (complex 1 protein, LYR family protein [Tetrahymena thermophila SB210] >gi|89295257|gb|EAR93245.1| complex 1 protein, LYR family protein [Tetrahymena thermophila SB210])

HSP 1 Score: 90.5077 bits (223), Expect = 9.149e-21
Identity = 38/87 (43.68%), Postives = 61/87 (70.11%), Query Frame = 0
Query:   10 PNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRT 96
            PN+EAL+LYREIL+ +  FYW N +GE W E++R+ AR+EFE  ++E DPLI  ++++  R+ + +T+ K +    K+ + VD+TR 
Sbjct:   28 PNKEALKLYREILKFSNYFYWNNTKGENWGEIIRKSARREFEIGKSESDPLIAMKMIMTTRESLQKTKEKMNDAYFKLHQTVDETRN 114          
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|514822246|ref|XP_004985792.1| (PREDICTED: uncharacterized protein LOC101759733 [Setaria italica] >gi|944228280|gb|KQK92684.1| hypothetical protein SETIT_037858mg [Setaria italica])

HSP 1 Score: 91.2781 bits (225), Expect = 1.261e-20
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0
Query:   12 REALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQT 76
            REAL LYR+ILR  R F WP+D G PWREVLR  AR+EFE+AR E+DP ++ARLL+ GRD V Q 
Sbjct:   70 REALGLYRDILRATRLFAWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQA 134          
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|219129434|ref|XP_002184894.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403679|gb|EEC43630.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 88.1965 bits (217), Expect = 1.953e-20
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 0
Query:   13 EALRLYREILRTARRFYWPN-DEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQ 77
            E L LYRE LRTAR F+W + D G+PW   LR  AR+EF+QAR E DPL+IARLLV GRDCV Q Q
Sbjct:    3 EVLSLYRECLRTARHFHWADPDTGQPWNARLRDAARQEFQQARNETDPLVIARLLVTGRDCVQQVQ 68          
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|1072234277|gb|OEU19007.1| (hypothetical protein FRACYDRAFT_155567, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 87.8113 bits (216), Expect = 3.173e-20
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0
Query:   13 EALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQ 77
            EAL LYREILRTA+ F+W +++G PW   L+ EARKEF  A+ E DPLI+ARLLV GRDCV Q Q
Sbjct:    3 EALSLYREILRTAKHFHWCDEKGIPWNIRLKEEARKEFMVAKDETDPLILARLLVTGRDCVQQVQ 67          
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|670361916|ref|XP_008650788.1| (uncharacterized protein LOC103631682 [Zea mays] >gi|1142624353|gb|ONL93415.1| LYR family of Fe/S cluster biogenesis protein [Zea mays])

HSP 1 Score: 89.7373 bits (221), Expect = 4.716e-20
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 0
Query:   12 REALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKF-DMTQQKI 87
            REAL LYR+ILR AR F W +D G PWREVLR  AR+EFE AR E+DP ++ARLL+ GRD V Q   +  D +++ I
Sbjct:   68 REALALYRDILRAARLFAWTDDRGVPWREVLRANARREFEDARGERDPEVVARLLIGGRDAVQQALDRLADASRRAI 144          
The following BLAST results are available for this feature:
BLAST of EWM21366.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101559|gb|EWM21366.1|3.861e-103100.00Complex 1 LYR protein [Nannochloropsis gaditana][more]
gi|168024109|ref|XP_001764579.1|8.115e-2256.98predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|242042317|ref|XP_002468553.1|2.345e-2158.44uncharacterized protein LOC8085662 [Sorghum bicolo... [more]
gi|573923567|ref|XP_006649359.1|6.415e-2155.13PREDICTED: uncharacterized protein LOC102714990 [O... [more]
gi|1002253018|ref|XP_015630745.1|7.904e-2155.13PREDICTED: uncharacterized protein LOC4331544 [Ory... [more]
gi|118360513|ref|XP_001013490.1|9.149e-2143.68complex 1 protein, LYR family protein [Tetrahymena... [more]
gi|514822246|ref|XP_004985792.1|1.261e-2064.62PREDICTED: uncharacterized protein LOC101759733 [S... [more]
gi|219129434|ref|XP_002184894.1|1.953e-2065.15predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1072234277|gb|OEU19007.1|3.173e-2064.62hypothetical protein FRACYDRAFT_155567, partial [F... [more]
gi|670361916|ref|XP_008650788.1|4.716e-2057.14uncharacterized protein LOC103631682 [Zea mays] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9338rna9338Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications