EWM21366.1, cds9308 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|585101559|gb|EWM21366.1| (Complex 1 LYR protein [Nannochloropsis gaditana]) HSP 1 Score: 300.056 bits (767), Expect = 3.861e-103 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 Query: 1 MSPGLPTIGPNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRTRRCRKNEVHKKEGCNRCKIRKPTKKEQRLVQRWKPLPAVCGIEILKNASSP 147 MSPGLPTIGPNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRTRRCRKNEVHKKEGCNRCKIRKPTKKEQRLVQRWKPLPAVCGIEILKNASSP Sbjct: 1 MSPGLPTIGPNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRTRRCRKNEVHKKEGCNRCKIRKPTKKEQRLVQRWKPLPAVCGIEILKNASSP 147
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|168024109|ref|XP_001764579.1| (predicted protein [Physcomitrella patens] >gi|162684157|gb|EDQ70561.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 93.9745 bits (232), Expect = 8.115e-22 Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 0 Query: 2 SPGLPTIGPNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKI 87 S GL T REAL LYREILRT R F W N+ G PWR++LR R EFEQAR E DP +IARLLVVGRD V KF + +++ Sbjct: 38 SAGLTT--SRREALALYREILRTTRLFTWTNEHGVPWRDLLRDSTRLEFEQARYETDPEVIARLLVVGRDAVQAAIEKFSVKAEEL 121
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|242042317|ref|XP_002468553.1| (uncharacterized protein LOC8085662 [Sorghum bicolor] >gi|92429672|gb|ABE77205.1| putative complex 1 protein, LYR family [Sorghum bicolor] >gi|241922407|gb|EER95551.1| hypothetical protein SORBI_3001G513100 [Sorghum bicolor]) HSP 1 Score: 93.2041 bits (230), Expect = 2.345e-21 Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 0 Query: 12 REALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKF-DMTQQKI 87 REAL LYR+ILR AR F WP+D G PWREVLR AR+EFE+AR E+DP ++ARLL+ GRD V Q + D +++ I Sbjct: 73 REALALYRDILRAARLFAWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQALDRLADASRRAI 149
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|573923567|ref|XP_006649359.1| (PREDICTED: uncharacterized protein LOC102714990 [Oryza brachyantha]) HSP 1 Score: 92.0485 bits (227), Expect = 6.415e-21 Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 0 Query: 12 REALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRE 89 REAL LYR+ILR R F WP+D G PWREVLR AR+EFE+AR E+DP ++ARLL+ GRD V Q + +++ E Sbjct: 71 REALGLYRDILRVTRLFEWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQALDRLAEASRRVVE 148
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|1002253018|ref|XP_015630745.1| (PREDICTED: uncharacterized protein LOC4331544 [Oryza sativa Japonica Group] >gi|108706063|gb|ABF93858.1| Complex 1 protein containing protein, expressed [Oryza sativa Japonica Group] >gi|113547366|dbj|BAF10809.1| Os03g0136600 [Oryza sativa Japonica Group] >gi|125542313|gb|EAY88452.1| hypothetical protein OsI_09917 [Oryza sativa Indica Group] >gi|125584836|gb|EAZ25500.1| hypothetical protein OsJ_09323 [Oryza sativa Japonica Group] >gi|215692999|dbj|BAG88419.1| unnamed protein product [Oryza sativa Japonica Group] >gi|937907266|dbj|BAS82186.1| Os03g0136600 [Oryza sativa Japonica Group]) HSP 1 Score: 92.0485 bits (227), Expect = 7.904e-21 Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 0 Query: 12 REALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRE 89 REAL LYR+ILR R F WP+D G PWREVLR AR+EFE+AR E+DP ++ARLL+ GRD V Q + +++ E Sbjct: 72 REALGLYRDILRVTRLFEWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQALDRLAEASRRMVE 149
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|118360513|ref|XP_001013490.1| (complex 1 protein, LYR family protein [Tetrahymena thermophila SB210] >gi|89295257|gb|EAR93245.1| complex 1 protein, LYR family protein [Tetrahymena thermophila SB210]) HSP 1 Score: 90.5077 bits (223), Expect = 9.149e-21 Identity = 38/87 (43.68%), Postives = 61/87 (70.11%), Query Frame = 0 Query: 10 PNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRT 96 PN+EAL+LYREIL+ + FYW N +GE W E++R+ AR+EFE ++E DPLI ++++ R+ + +T+ K + K+ + VD+TR Sbjct: 28 PNKEALKLYREILKFSNYFYWNNTKGENWGEIIRKSARREFEIGKSESDPLIAMKMIMTTRESLQKTKEKMNDAYFKLHQTVDETRN 114
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|514822246|ref|XP_004985792.1| (PREDICTED: uncharacterized protein LOC101759733 [Setaria italica] >gi|944228280|gb|KQK92684.1| hypothetical protein SETIT_037858mg [Setaria italica]) HSP 1 Score: 91.2781 bits (225), Expect = 1.261e-20 Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0 Query: 12 REALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQT 76 REAL LYR+ILR R F WP+D G PWREVLR AR+EFE+AR E+DP ++ARLL+ GRD V Q Sbjct: 70 REALGLYRDILRATRLFAWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQA 134
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|219129434|ref|XP_002184894.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403679|gb|EEC43630.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 88.1965 bits (217), Expect = 1.953e-20 Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 0 Query: 13 EALRLYREILRTARRFYWPN-DEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQ 77 E L LYRE LRTAR F+W + D G+PW LR AR+EF+QAR E DPL+IARLLV GRDCV Q Q Sbjct: 3 EVLSLYRECLRTARHFHWADPDTGQPWNARLRDAARQEFQQARNETDPLVIARLLVTGRDCVQQVQ 68
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|1072234277|gb|OEU19007.1| (hypothetical protein FRACYDRAFT_155567, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 87.8113 bits (216), Expect = 3.173e-20 Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0 Query: 13 EALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQ 77 EAL LYREILRTA+ F+W +++G PW L+ EARKEF A+ E DPLI+ARLLV GRDCV Q Q Sbjct: 3 EALSLYREILRTAKHFHWCDEKGIPWNIRLKEEARKEFMVAKDETDPLILARLLVTGRDCVQQVQ 67
BLAST of EWM21366.1 vs. NCBI_GenBank
Match: gi|670361916|ref|XP_008650788.1| (uncharacterized protein LOC103631682 [Zea mays] >gi|1142624353|gb|ONL93415.1| LYR family of Fe/S cluster biogenesis protein [Zea mays]) HSP 1 Score: 89.7373 bits (221), Expect = 4.716e-20 Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 0 Query: 12 REALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKF-DMTQQKI 87 REAL LYR+ILR AR F W +D G PWREVLR AR+EFE AR E+DP ++ARLL+ GRD V Q + D +++ I Sbjct: 68 REALALYRDILRAARLFAWTDDRGVPWREVLRANARREFEDARGERDPEVVARLLIGGRDAVQQALDRLADASRRAI 144 The following BLAST results are available for this feature:
BLAST of EWM21366.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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