rna9287, rna9287 (mRNA) Nannochloropsis gaditana

Overview
Namerna9287
Unique Namerna9287
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length895
Alignment locationKK037252.1:289188..290634 +

Link to JBrowse

Properties
Property NameValue
Productdna-directed rna polymerase ii subunit rpb11-a
Orig transcript idgnl|cribi|Naga_100147g17.4608.mrna
Orig protein idgnl|cribi|Naga_100147g17.4608
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:289188..290634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100147g17gene9006Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9287rna9287-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21427.1cds9257Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9287 ID=rna9287|Name=rna9287|organism=Nannochloropsis gaditana|type=mRNA|length=895bp
TTTTCATTTTTTGCCTTCTTGTAATGTACAACAGGTGTTAAGGCTTTGCT
TCATTTTTGAGGACTGCGTTGCATTTTGCCGTGGCTTCCGAGAACAAGGA
GCAGATACCTTCTTTCTTCTTCATCACACCACAAAATTGCGACGTGGCGT
CACACAAGCCATGGCGCGATCTTTGCACGCCTTGTTTTTCCTCGCTGTTG
TTTCCTCCATATTCAATAGCATCGTGTGCGTCTCCGCCTTCGTCCCTCCT
TTGTCCCCTTTGTCTTATATACGTCGCGAGCACCATGGCCTGGTTGATTC
GTCATTCCTCGTCGACCCCATCACAGCTCCCCAGAACTGGCCCCATGCGC
CGCAGCTATCTCGTCTACACAGCTCATCCAGCAGCAATAGCCAATCGGAC
GAAAAGAATAAACGCTCGAAACGTCGACGGCGCAAGCAAGGGGGCGCCTC
CTCTCCCTCCTCCCCCTCGGCGTTACCAAGCCCGTCTTCCTACGATGCGA
GCCTGGAGGAGCTGATCGTAGACGAACGCAAGTCCGCACTGCCTCGTCTT
GAGGACTTGAAAATGCTCAAAAGTGGGAAAGCTGTAGGGCCTGACACGGG
CAGTACGGGCGGAAAGCCCGGTATCCTGATGCCGCGAGAGCTGGAAGAAA
TGAAGCAGAAAGAAAAGGCAAAACAGGCGACTAAAGGCGCACCAGCATAT
TTTGATACAATGACGAAGGTCACATGGGCTGCGATCGCCCTGCTAATATT
GGCGGAGGTGGTGGCGCAAGTGATCCCTAAAGCCTCCACAGTCACCCCGG
GGGGGTAAGGAGGAAGCTGCCTGACCAAGGCATTTGAAAAGGCGAACTAA
ATACGCAAACCAGAAGAATTAATGACCGACACACCCCAAAATGGC
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protein sequence of rna9287

>rna9287-protein ID=rna9287-protein|Name=rna9287|organism=Nannochloropsis gaditana|type=polypeptide|length=97bp
MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRM
QLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQVGSEGVRE
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mRNA from alignment at KK037252.1:289188..290634+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9287 ID=rna9287|Name=rna9287|organism=Nannochloropsis gaditana|type=mRNA|length=1447bp|location=Sequence derived from alignment at KK037252.1:289188..290634+ (Nannochloropsis gaditana)
TGCAAATGTCCCTCCGAAAGTAGCGACACACCATGACAGCCAGAGGCCGT
TTGGGGGGACGACCGGAATTTTTAATAAACACATCAGCATTTGCAATGTC
ATTTCCCTGAATACCGTCACAATCTGTTCGACATGCAAAGTTGACCAGGC
AAATTAGGGTTacttttttcttcacgtccatccttttccttcttggcaAC
TACAGCTCCTAGTGAGTAGCAGCGTTAGTCTGGTTCTCACCACCTTGGGG
TAGAGAGGCTCCTGCAGCATTCCAAAGCGCTTTCTCCACCATCCAGGCCT
TGAGAATACAACCAGTGTTACAGCATGAATGAGCCCAAACGGTACGCGAA
CTGGAAAGCGAGGTCTTACCCAGTGTTCGATGGAGAACGGACATCGTGGT
GTTTAGAGGACCCGCAACAGCGCATTGAATGGCCTGTGGCACGTAGTGAT
TGGACCCTAGTCTACGTATACCTTTCTATTCCCTCATGTTGCGCGGCGTC
ATTACGAATTTGCGACACTCACCGCCGATGCACCACTCGCAAACATACAC
GCCTTGTACAGAGCTGACTCCTACCGCTTGTCCGAGGGCGAAAAGAAGTA
CGTGGGGGGGTCGTAGCTATCTTGGATAGAGTTTTTCATCAATTTAATGT
AAAGCATGTATGTGTCGCACTGAGCGAAGGGAGTGGAATGCGGCGCCGGT
TCAATAAGTACTCCACGCCGAGGAAGTCATGTAcgcctccctgtctcctt
gcTTTCAGGTGCGAATGGAAAGACAGCGCGAATGAAAAAATGGCGAACTC
AGGCACCCTTGTCATTAACAAGGAGGACCACACGATGGGAAACCTGATCC
GGATGCAGCTTTTGAGGGACAAACAGGTGAAGTTCGCGGGGTACATTCAC
CCGCATCCCTTGATCCATAAGATCGAGCTGCGAGTACAGACCCTGGACAG
GGCGCTCTCTACGCCCATGCAGGtagggagtgagggagtgagggagtgag
ggagggagggaggacttggggggaagaaggtagACGGACGGGAGGCAGGA
CGGCTTAGGGGTGCCTGGTGAGCAAGACGGACGCTTCCTGCGGGCGCCGG
TTGTCTGCCCCCTggcttcctgcctcccaacgcgtctctttcccttcccc
ctctttcttcttttctctttcctgcgTCCCACCCACCTCCTTTCCATGGT
CCTCGCACGGGTCCAGGCCCTGGAGAACGCCCTCTCCGATCTCAACCAAG
AATTTACAGGGCTCAAGGCTCGCTTCCAACAGGAAGTCCGACGGGTGCag
gcggagcaggcggaTAGGGAGTACAGATAgaagcaaggagaggggaagtg
aggggggggagcgagggactTGTAAACAGGCACACGCACAAATGGCATTT
AAATGCCCGTTTTTCGATCCAAAGCAAGAGACAACGATACTTGGAAT
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Coding sequence (CDS) from alignment at KK037252.1:289188..290634+

>rna9287 ID=rna9287|Name=rna9287|organism=Nannochloropsis gaditana|type=CDS|length=882bp|location=Sequence derived from alignment at KK037252.1:289188..290634+ (Nannochloropsis gaditana)
ATGAATGAGCCCAAACGAGCTGACTCCTACCGCTTGTCCGAGGGCGAAAA
GAAGTGCGAATGGAAAGACAGCGCGAATGAAAAAATGGCGAACTCAGGCA
CCCTTGTCATTAACAAGGAGGACCACACGATGGGAAACCTGATCCGGATG
CAGCTTTTGAGGGACAAACAGGTGAAGTTCGCGGGGTACATTCACCCGCA
TCCCTTGATCCATAAGATCGAGCTGCGAGTACAGACCCTGGACAGGGCGC
TCTCTACGCCCATGCAGGtagggagtgagggagtgagggagtgaATGAAT
GAGCCCAAACGAGCTGACTCCTACCGCTTGTCCGAGGGCGAAAAGAAGTG
CGAATGGAAAGACAGCGCGAATGAAAAAATGGCGAACTCAGGCACCCTTG
TCATTAACAAGGAGGACCACACGATGGGAAACCTGATCCGGATGCAGCTT
TTGAGGGACAAACAGGTGAAGTTCGCGGGGTACATTCACCCGCATCCCTT
GATCCATAAGATCGAGCTGCGAGTACAGACCCTGGACAGGGCGCTCTCTA
CGCCCATGCAGGtagggagtgagggagtgagggagtgaATGAATGAGCCC
AAACGAGCTGACTCCTACCGCTTGTCCGAGGGCGAAAAGAAGTGCGAATG
GAAAGACAGCGCGAATGAAAAAATGGCGAACTCAGGCACCCTTGTCATTA
ACAAGGAGGACCACACGATGGGAAACCTGATCCGGATGCAGCTTTTGAGG
GACAAACAGGTGAAGTTCGCGGGGTACATTCACCCGCATCCCTTGATCCA
TAAGATCGAGCTGCGAGTACAGACCCTGGACAGGGCGCTCTCTACGCCCA
TGCAGGtagggagtgagggagtgagggagtga
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Synonyms
Publications