EWM21427.1, cds9257 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|585101655|gb|EWM21427.1| (dna-directed rna polymerase ii subunit rpb11-a [Nannochloropsis gaditana]) HSP 1 Score: 204.912 bits (520), Expect = 5.536e-67 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 Query: 1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQVGSEGVRE 97 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQVGSEGVRE Sbjct: 1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQVGSEGVRE 97
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|553190928|ref|XP_005855294.1| (DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis gaditana CCMP526] >gi|422293772|gb|EKU21072.1| DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis gaditana CCMP526] >gi|585101654|gb|EWM21426.1| dna-directed rna polymerase ii subunit rpb11-a [Nannochloropsis gaditana]) HSP 1 Score: 191.43 bits (485), Expect = 2.566e-61 Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0 Query: 1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQ Sbjct: 1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQA 90
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|397616203|gb|EJK63876.1| (hypothetical protein THAOC_15445 [Thalassiosira oceanica]) HSP 1 Score: 107.071 bits (266), Expect = 5.707e-28 Identity = 46/78 (58.97%), Postives = 65/78 (83.33%), Query Frame = 0 Query: 2 NEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQT 79 N P+R+D++ L + E+K E++ + K+AN+GT +NKEDHT+GNL+RMQLLRD QVKFAGY+HPHPL+++I L+VQT Sbjct: 3 NRPERSDAFLLGDDEEKIEYQ--PDTKVANAGTFTLNKEDHTVGNLLRMQLLRDPQVKFAGYMHPHPLVNRIHLKVQT 78
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|224007319|ref|XP_002292619.1| (probable dna-directed RNA polymerase II 13.6 kDa polypeptide [Thalassiosira pseudonana CCMP1335] >gi|220971481|gb|EED89815.1| probable dna-directed RNA polymerase II 13.6 kDa polypeptide [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 104.76 bits (260), Expect = 4.198e-27 Identity = 47/97 (48.45%), Postives = 69/97 (71.13%), Query Frame = 0 Query: 1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQVGSEGVRE 97 MN P+R+ ++ L + E+K E++ + K++N+GT NKEDHT+ NL+RMQLLRD VKFAGY+HPHPLIHKI L++QT ++ P + S + + Sbjct: 1 MNAPERSSAFLLDDDEEKIEYQ--PDTKVSNAGTFTFNKEDHTVANLLRMQLLRDPAVKFAGYMHPHPLIHKIHLKIQTTTSQVA-PAETLSAAIED 94
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|301093050|ref|XP_002997374.1| (DNA-directed RNA polymerase II subunit J [Phytophthora infestans T30-4] >gi|262110772|gb|EEY68824.1| DNA-directed RNA polymerase II subunit J [Phytophthora infestans T30-4]) HSP 1 Score: 104.375 bits (259), Expect = 6.020e-27 Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0 Query: 1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90 MN P R+DSY L EG +K ++ + K++N+G I +EDHTMGNLIRMQLLRD V F+GY HPHPLIH I +RVQT D S+P++ Sbjct: 1 MNAPNRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDITVRVQTND--ASSPVEA 86
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|695445565|ref|XP_009534261.1| (hypothetical protein PHYSODRAFT_523164 [Phytophthora sojae] >gi|348669578|gb|EGZ09400.1| hypothetical protein PHYSODRAFT_523164 [Phytophthora sojae]) HSP 1 Score: 103.605 bits (257), Expect = 1.074e-26 Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0 Query: 1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90 MN P R+DSY L EG +K ++ + K++N+G I +EDHTMGNLIRMQLLRD V F+GY HPHPLIH I +RVQT D S+P++ Sbjct: 1 MNAPNRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVMFSGYRHPHPLIHDITVRVQTND--ASSPVEA 86
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|675187787|ref|XP_008902778.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566028370|gb|ETI51281.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567965674|gb|ETK91144.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567994387|gb|ETL44546.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568023665|gb|ETL97718.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568054072|gb|ETM50876.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568097103|gb|ETN11847.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570332056|gb|ETO80004.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570955982|gb|ETP21046.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570991121|gb|ETP48969.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970628471|gb|KUF76077.1| DNA-directed RNA polymerase II subunit J [Phytophthora nicotianae] >gi|970656111|gb|KUF94168.1| hypothetical protein AM588_10007596 [Phytophthora nicotianae]) HSP 1 Score: 103.605 bits (257), Expect = 1.198e-26 Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0 Query: 1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90 MN P R+DSY L EG +K ++ + K++N+G I +EDHTMGNLIRMQLLRD V F+GY HPHPLIH I +RVQT D S+P++ Sbjct: 1 MNAPNRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDIVVRVQTND--ASSPVEA 86
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|953500651|emb|CEG38360.1| (dna-directed rna polymerase ii subunit j [Plasmopara halstedii]) HSP 1 Score: 103.219 bits (256), Expect = 1.628e-26 Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0 Query: 1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90 MN P R+DSY L EG +K ++ + K++N+G I +EDHTMGNLIRMQLLRD V F+GY HPHPLIH I +RVQT D S+P++ Sbjct: 1 MNAPNRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDIIVRVQTND--ASSPVEA 86
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|1214706624|gb|OWZ18140.1| (DNA-directed RNA polymerase II subunit J [Phytophthora megakarya]) HSP 1 Score: 103.219 bits (256), Expect = 1.711e-26 Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0 Query: 1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90 MN P R+DSY L EG +K ++ + K++N+G I +EDHTMGNLIRMQLLRD V F+GY HPHPLIH I +RVQT D S+P++ Sbjct: 1 MNAPNRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDIIVRVQTND--ASSPVEA 86
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|1072235891|gb|OEU20619.1| (hypothetical protein FRACYDRAFT_224004 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 100.523 bits (249), Expect = 2.710e-25 Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 0 Query: 1 MNEPKRADSYRLSE--GEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQVGSEGVRE 97 MN P+R S+ L E GE K + D K+ N+GT NKEDHT+GNL RMQLLRD V+FAGY+HPHPL++ I L++QT + ++ P++V S + + Sbjct: 1 MNAPERTASFLLDEDSGEVKIVYSDDT--KVTNAGTFRFNKEDHTIGNLFRMQLLRDPSVRFAGYLHPHPLVYYINLKIQTNNSTVA-PVEVLSSAIED 96 The following BLAST results are available for this feature:
BLAST of EWM21427.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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