|
|
Properties
| Property Name | Value |
|---|
| Product | retinoblastoma binding protein 4 |
| Orig transcript id | gnl|cribi|Naga_100307g2.2280.mrna |
| Orig protein id | gnl|cribi|Naga_100307g2.2280 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037252.1 | supercontig | KK037252.1:252447..254804 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9270 ID=rna9270|Name=rna9270|organism=Nannochloropsis gaditana|type=mRNA|length=1835bp
CAGAGACAGCTTGAGTGTCGCTGGCCGCGCCTAGCACCGGAGGCACTGCA
ACCCAAATGGACGCAGGACACCTTGCAAAGTAGACAGCCACAAAATTCAT
ACGGAAATTCACTGCATGGCATGTGAGCCGCTGATTTGAGCACAACGCGC
GAATGACTCTCCTTTCCCGACTGTGCAGTTGGGCAAGATGATGACGTACC
CCTTTCCAATCACATTTGTTCTCCTTTCCAACAATAATATGACAAGGCAA
TACCAGCAGTTCGCATCTACCTCGAAGTACACTATTTAATTAAGCTGGTG
CTTGCCACGCAAGGAGCCAAACTTGGCTGGGTGCCTATCCCTGTACAGGA
TATTCTTTACAGCGCATGGGAAGTGATCGAAATAGCGATGGAGGGTCTGC
TGAATATGTATGACACCTCTGACGAGGACGGGAATAACAGTGATGCGGAG
GCACGCAACAAGGCCGTACTTGACGACAGGGTTTCCTATACCCCCCTTTT
CCTTGGAACTGCCGCCCGTGCTGATCCTCCCTCCTCACCTCCCCGTAAGC
AACCCGTTTTGAATTCCTTTCATCGCGCTCAAAGAGCCTTGACGACTGTC
CAGAAGCGACTCCGTCCCTCCTCCAACTTGCCAGGACTCGACCAAGACTT
CTTCCATGTCTCGGCAGAACACGTTTACACCACGGTATTGACCAACGGGA
AACGCCGAAGCCTTCCGGCCCGCCGAGCTCCGTCGTCCTCCTCCTCCTCC
TCCCGCTCCGACGGCCAGCCTCTTGCCTCGGTATCCTCCGTAGATTGGAT
TCGAAGCGTCCCGCACTTTGAAGGGAACTGGGCAACGCATGTGTACATCA
CCGTGCCCAACACCAGGGAGGTGGTGCGAATGGCGAAGGCATGCGTTCAG
GAGGCTCGGCGGCGGTTGAGGAATGTCCTCGGCACCGAGACAGGAGGCGA
GGAAGGACGGCAAGAAAAGAAGGAGCTGGTCGAGAATGACTTGAACCCGA
TCCCTTCGGCTGACTCTTCGGATGAAGACGAGGAGGAGGAGGAGGGGGCG
GGGGAGGAGGAAGGGAGAGAGCGCCGACATCTTCCTTCGGACCAGGAGGC
GTCCGGGCAGCACCTCAGCCTCTCTCGCACCGTCTATCTCCGCTCTTACC
ACATGGAGCCGTTCGTGGCCGATCTGGGCAAGGCCTTGGCGTGGGCCAGG
GCCTTCACCTTCAGGCTGGCCTGGCGCCGAGGACGAGGGGGGGGGAGGGT
TTGCTCGTGAACGATGACAGGTCACGGTCCTTCGTGACGGTGCCTGTGGA
GGAAGGGGGGGAAGGGCGGCTCCGTCAGCTGGTGGAGAGCGTGGACGAGG
TCTTGGTCAAGTATCGGCAGCCCCCTTACTACCGCGGGGCCCTTTTCCAC
ATCTCTGTGGCCGCTGTGAAGGGAGACGTGTCGGAGGCCTGGGGGGCGGG
GGCCCGGGCGGGGAAGGGGGAGGAGGAGGAGGAAGGGGAAGAGGAGGAGG
GGGAGGGGGAGGAGTACGCGGCATCGGTTAAGGTGGATAGGGTGGAGTGC
CGTATCGGACATAAACTGTACGAGGTCAAATTGAGAGAGTAGGGGGGCAG
GCCGGGATGTGTGGCTCGAGTGGCAGAAAAACGGAAAGGGAGAGAACCTA
TAAGAGGAGGTAGAAGCGGCTTGGCGGGGGGCTGAAGGAGGACTTTTGGA
TGCAGGGAGGGGGTAATATGGTCCAAAGATAGATGACATGGATGGCGACA
CAAGCACCATGTACATCGATGCCGCCAACATTGTTGGCGGTATGGAAAGA
AAGCCTATCAAGCCGCGTCACGGCCCTGCTTATTG back to topprotein sequence of rna9270 >rna9270-protein ID=rna9270-protein|Name=rna9270|organism=Nannochloropsis gaditana|type=polypeptide|length=532bp
MAETDAPDQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTV
QWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDA
KKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGP
SADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLS
GSDDARVCLWDMTQAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSD
DKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSV
RLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIA
KIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNI
LQIWQMADNIYMMEEEEEEMGVGAGAACATRIWRDRGAESREGRREGGRE
GGRYGKDGLGGVRGDWDSKFVRTHAWHASRGRRGGMRGARGEGRARRARQ
GGVRRPTVRGIGRETPCLKKWSQGTQTRTKYA back to topmRNA from alignment at KK037252.1:252447..254804+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9270 ID=rna9270|Name=rna9270|organism=Nannochloropsis gaditana|type=mRNA|length=2358bp|location=Sequence derived from alignment at KK037252.1:252447..254804+ (Nannochloropsis gaditana)
aaaaaaggcaaaggaagTGCGTGCGAAGAGCCAGGAGGCAGCACCATGGC
GGAGACGGACGCTCCAGACCAGGAGAGGCAAGACGAGGCTCAAGACAAGA
TGATTGCCGAGGAGTACAAGTACGTTTTTTCAGTAGGATGACTGATCCGT
ACAATTGGCTTGGAGGCTCGCGTGGTTGGGGCGGAGCACGCGGTGTTGtc
tcctacccctccctttcctcaaccTTTCTGCTTTATCCCACCGTGCACCT
GTCAATGTACGCTCTTTCGTCTATTGTTATGGTCTGGTATTTCTCGTCGT
GATTTCCTTGTTACCTTGTCGTGGCCTTTGACCCTGTACgacatcctttt
cctcctctcccgggtGCCTGCAGGATCTGGAAAAAGAACTCCCCATTTCT
TTACGACCTAGTCATGACACACGCCCTGGAATGGCCGTCACTGACCGTGC
AATGGCTTCCTGGTGTAAAAACGGCGGAGAACAACCCTGAATACGCGACG
CACAAGCTCTTGTTTGGGACGCACACTGCGGCGGGGGAACAGAACTACCT
AATTCAAGCCAACGTGAACTTGCCCTTACCGGACACAGAGATCGACGCCA
AGAAGTACGAGGACGAAcgcggggaggtggggggctTCGGAGGTATGAAC
TgcaaggtggaggtgaaggtgAAGATCGCgcacgagggggaggtgaacCG
GGCCCGATACATGCCGCAGAACCCCTTCGTGGTCGCCACCAAGGGCCCGA
GCGCCGacgtcttcgtcttcgaCATCACCAAACACCCGTCCGCCCCCGGA
CCCAACGACAGCTTCCGGCCCGAGCACGTTTGCAAAGGGCACGCGCGCGA
GGGCTACGGGTTGGCCTGGTCGCCTGCGGCCCCCGGGCAGCTCTTGAGCG
GGAGCGACGACGCGCGCGTCTGTCTCTGGGACATGAcccaggcggggagg
gtggtggaggaggtgcgagTCTTCCGGGGGCACAcctcggtggtggagga
cgtggcatGGCACAGCGCCCACCCGCATCTCTTCGGCTCCGTCAGCGACG
ACAAGAGCCTGGCGCTCTGGGACGTCCGGGAAAGCGGGAGCcagccctcc
cacgcccgggCAGGGGCCCACGAGGACTTTGTCaactgcctctccttctc
cccccactCGGACTTCTTGTTCCTGACGGGCTCGGCGGATCGGAGCGTGC
GGCTCTGGGACCTTCGGAGTCTGAGTGCCCCTCTGCATACTTTCGAGGGc
cacgaggacgaggtcttCCAGGTCAAGTGGGCACCATTCCACGAGAACGT
CTTCGCCTCCTGCGGCGCGGACCGACGTGTGAACGTGTGGGATATTGCCA
AGATTGGGGAGGAACAGTCTCAGGAGGACGCCGCGGACGGCCCGCCCGAG
TTGCTCTTCATCCACGGGGGGCACACGGCCAAGGTCAGCGACTTGGCCTg
gaacgaggaggacccCTGGGTGGTGGCgagcgtggcggaggacaacATAC
TGCAGATATGGCAGATGGCCGACAACATATatatgatggaggaggaggag
gaggaaatgggggtgggggcgggggcggcttGCGCGACGAGGATTTGGAG
GGACCGGGGGGCGGaaagtagggagggaagaagggagggagggagggagg
gagggagatatgGAAAGGATGGGCTTGGTGGAGTGAGAGGGGACTGGGAC
AGTAAGTTTGTAAGGACTCACGCGTGGCATGCATCCAGGGGACGGCGGGG
TGGGATGAGAGGGGctaggggggagggaagggcacgGAGAGCGCGCCAGG
GGGGGGTCCGGCGTCCCACGGTGAGAGGGATCGGGAGAGAAACGCCCTGT
CTGAAGAAGTGGAGTCAGGGTACACAGACACGAACCAAGTACGCATAGCT
CTTGGTTTTCTCATAGTCGCACACCCTGTGCCTGCCGCCCAGCCCACGAC
GGCGTCCTTGacgtgccttcctcctcttgcctgGCCGCCTCGGTCCGCCC
CTtttgcccctctctccccccccctcgtccttcccagcctccctcccagc
tcctCATTCCTAGACATGTCCAGGTGCTTTGAACACGCTCCTCCAAGAGA
AAACGACGCGCGCGCTGTGACTGTAGCTGTCTCAATCGCCTTCattgccc
tctctctttacccttcccctccatcgctcctgctcctctgccGTTCCTTG
CCCACCACGAACGCGTAGACGCCAAAGCGCCACCGAAACTTTTGTGACAC
AATTTGCTCCGTTTTGACtcggcttcttccttcccgggcGCCTCATGCTG
CTGAGTCCGAGGGCCACGGGCAAGGCTTTCAccaagccctcccccggccc
ttccttcc back to topCoding sequence (CDS) from alignment at KK037252.1:252447..254804+ >rna9270 ID=rna9270|Name=rna9270|organism=Nannochloropsis gaditana|type=CDS|length=3198bp|location=Sequence derived from alignment at KK037252.1:252447..254804+ (Nannochloropsis gaditana)
ATGGCGGAGACGGACGCTCCAGACCAGGAGAGGCAAGACGAGGCTCAAGA
CAAGATGATTGCCGAGGAGTACAAGATCTGGAAAAAGAACTCCCCATTTC
TTTACGACCTAGTCATGACACACGCCCTGGAATGGCCGTCACTGACCGTG
CAATGGCTTCCTGGTGTAAAAACGGCGGAGAACAACCCTGAATACGCGAC
GCACAAGCTCTTGTTTGGGACGCACACTGCGGCGGGGGAACAGAACTACC
TAATTCAAGCCAACGTGAACTTGCCCTTACCGGACACAGAGATCGACGCC
AAGAAGTACGAGGACGAAcgcggggaggtggggggctTCGGAGGTATGAA
CTgcaaggtggaggtgaaggtgAAGATCGCgcacgagggggaggtgaacC
GGGCCCGATACATGCCGCAGAACCCCTTCGTGGTCGCCACCAAGGGCCCG
AGCGCCGacgtcttcgtcttcgaCATCACCAAACACCCGTCCGCCCCCGG
ACCCAACGACAGCTTCCGGCCCGAGCACGTTTGCAAAGGGCACGCGCGCG
AGGGCTACGGGTTGGCCTGGTCGCCTGCGGCCCCCGGGCAGCTCTTGAGC
GGGAGCGACGACGCGCGCGTCTGTCTCTGGGACATGAcccaggcggggag
ggtggtggaggaggtgcgagTCTTCCGGGGGCACAcctcggtggtggagg
acgtggcatGGCACAGCGCCCACCCGCATCTCTTCGGCTCCGTCAGCGAC
GACAAGAGCCTGGCGCTCTGGGACGTCCGGGAAAGCGGGAGCcagccctc
ccacgcccgggCAGGGGCCCACGAGGACTTTGTCaactgcctctccttct
ccccccactCGGACTTCTTGTTCCTGACGGGCTCGGCGGATCGGAGCGTG
CGGCTCTGGGACCTTCGGAGTCTGAGTGCCCCTCTGCATACTTTCGAGGG
ccacgaggacgaggtcttCCAGGTCAAGTGGGCACCATTCCACGAGAACG
TCTTCGCCTCCTGCGGCGCGGACCGACGTGTGAACGTGTGGGATATTGCC
AAGATTGGGGAGGAACAGTCTCAGGAGGACGCCGCGGACGGCCCGCCCGA
GTTGCTCTTCATCCACGGGGGGCACACGGCCAAGGTCAGCGACTTGGCCT
ggaacgaggaggacccCTGGGTGGTGGCgagcgtggcggaggacaacATA
CTGCAGATATGGCAGATGGCCGACAACATATatatgatggaggaggagga
ggaggaaatgggggtgggggcgggggcggcttGCGCGACGAGGATTTGGA
GGGACCGGGGGGCGGaaagtagggagggaagaagggagggagggagggag
ggagggagatatgGAAAGGATGGGCTTGGTGGAGTGAGAGGGGACTGGGA
CAGTAAGTTTGTAAGGACTCACGCGTGGCATGCATCCAGGGGACGGCGGG
GTGGGATGAGAGGGGctaggggggagggaagggcacgGAGAGCGCGCCAG
GGGGGGGTCCGGCGTCCCACGGTGAGAGGGATCGGGAGAGAAACGCCCTG
TCTGAAGAAGTGGAGTCAGGGTACACAGACACGAACCAAGTACGCATAGA
TGGCGGAGACGGACGCTCCAGACCAGGAGAGGCAAGACGAGGCTCAAGAC
AAGATGATTGCCGAGGAGTACAAGATCTGGAAAAAGAACTCCCCATTTCT
TTACGACCTAGTCATGACACACGCCCTGGAATGGCCGTCACTGACCGTGC
AATGGCTTCCTGGTGTAAAAACGGCGGAGAACAACCCTGAATACGCGACG
CACAAGCTCTTGTTTGGGACGCACACTGCGGCGGGGGAACAGAACTACCT
AATTCAAGCCAACGTGAACTTGCCCTTACCGGACACAGAGATCGACGCCA
AGAAGTACGAGGACGAAcgcggggaggtggggggctTCGGAGGTATGAAC
TgcaaggtggaggtgaaggtgAAGATCGCgcacgagggggaggtgaacCG
GGCCCGATACATGCCGCAGAACCCCTTCGTGGTCGCCACCAAGGGCCCGA
GCGCCGacgtcttcgtcttcgaCATCACCAAACACCCGTCCGCCCCCGGA
CCCAACGACAGCTTCCGGCCCGAGCACGTTTGCAAAGGGCACGCGCGCGA
GGGCTACGGGTTGGCCTGGTCGCCTGCGGCCCCCGGGCAGCTCTTGAGCG
GGAGCGACGACGCGCGCGTCTGTCTCTGGGACATGAcccaggcggggagg
gtggtggaggaggtgcgagTCTTCCGGGGGCACAcctcggtggtggagga
cgtggcatGGCACAGCGCCCACCCGCATCTCTTCGGCTCCGTCAGCGACG
ACAAGAGCCTGGCGCTCTGGGACGTCCGGGAAAGCGGGAGCcagccctcc
cacgcccgggCAGGGGCCCACGAGGACTTTGTCaactgcctctccttctc
cccccactCGGACTTCTTGTTCCTGACGGGCTCGGCGGATCGGAGCGTGC
GGCTCTGGGACCTTCGGAGTCTGAGTGCCCCTCTGCATACTTTCGAGGGc
cacgaggacgaggtcttCCAGGTCAAGTGGGCACCATTCCACGAGAACGT
CTTCGCCTCCTGCGGCGCGGACCGACGTGTGAACGTGTGGGATATTGCCA
AGATTGGGGAGGAACAGTCTCAGGAGGACGCCGCGGACGGCCCGCCCGAG
TTGCTCTTCATCCACGGGGGGCACACGGCCAAGGTCAGCGACTTGGCCTg
gaacgaggaggacccCTGGGTGGTGGCgagcgtggcggaggacaacATAC
TGCAGATATGGCAGATGGCCGACAACATATatatgatggaggaggaggag
gaggaaatgggggtgggggcgggggcggcttGCGCGACGAGGATTTGGAG
GGACCGGGGGGCGGaaagtagggagggaagaagggagggagggagggagg
gagggagatatgGAAAGGATGGGCTTGGTGGAGTGAGAGGGGACTGGGAC
AGTAAGTTTGTAAGGACTCACGCGTGGCATGCATCCAGGGGACGGCGGGG
TGGGATGAGAGGGGctaggggggagggaagggcacgGAGAGCGCGCCAGG
GGGGGGTCCGGCGTCCCACGGTGAGAGGGATCGGGAGAGAAACGCCCTGT
CTGAAGAAGTGGAGTCAGGGTACACAGACACGAACCAAGTACGCATAG back to top
|