EWM21435.1, cds9240 (CDS) Nannochloropsis gaditana

Overview
NameEWM21435.1
Unique Namecds9240
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:252492..252565 +
Alignment locationKK037252.1:252820..254344 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21435.1
Productretinoblastoma binding protein 4
Orig transcript idgnl|cribi|Naga_100307g2.2280.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:252492..252565 +
KK037252.1supercontigKK037252.1:252820..254344 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR015943WD40/YVTN_repeat-like_dom
IPR022052Histone-bd_RBBP4_N
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
BLAST of EWM21435.1 vs. NCBI_GenBank
Match: gi|585101664|gb|EWM21435.1| (retinoblastoma binding protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 1099.35 bits (2842), Expect = 0.000e+0
Identity = 532/532 (100.00%), Postives = 532/532 (100.00%), Query Frame = 0
Query:    1 MAETDAPDQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYMMEEEEEEMGVGAGAACATRIWRDRGAESREGRREGGREGGRYGKDGLGGVRGDWDSKFVRTHAWHASRGRRGGMRGARGEGRARRARQGGVRRPTVRGIGRETPCLKKWSQGTQTRTKYA 532
            MAETDAPDQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYMMEEEEEEMGVGAGAACATRIWRDRGAESREGRREGGREGGRYGKDGLGGVRGDWDSKFVRTHAWHASRGRRGGMRGARGEGRARRARQGGVRRPTVRGIGRETPCLKKWSQGTQTRTKYA
Sbjct:    1 MAETDAPDQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYMMEEEEEEMGVGAGAACATRIWRDRGAESREGRREGGREGGRYGKDGLGGVRGDWDSKFVRTHAWHASRGRRGGMRGARGEGRARRARQGGVRRPTVRGIGRETPCLKKWSQGTQTRTKYA 532          
BLAST of EWM21435.1 vs. NCBI_GenBank
Match: gi|553183552|ref|XP_005853921.1| (retinoblastoma binding protein 4, partial [Nannochloropsis gaditana CCMP526] >gi|422295142|gb|EKU22441.1| retinoblastoma binding protein 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 874.774 bits (2259), Expect = 0.000e+0
Identity = 420/421 (99.76%), Postives = 421/421 (100.00%), Query Frame = 0
Query:    1 MAETDAPDQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYMMEEEEEEMG 421
            MAETDAPDQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGR+VEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYMMEEEEEEMG
Sbjct:    1 MAETDAPDQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRMVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYMMEEEEEEMG 421          
BLAST of EWM21435.1 vs. NCBI_GenBank
Match: gi|1173952939|gb|OQS00514.1| (histone-binding protein RBBP4 [Achlya hypogyna])

HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0
Identity = 251/407 (61.67%), Postives = 311/407 (76.41%), Query Frame = 0
Query:    5 DAPDQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIY 411
            ++P  + +D AQ+++IAEEYKIWKKN+PFLYDLVMTHALEWPSL+VQWLP   T+ +  +Y++HKLL GTHT+ G QNYL+ A V LPL DTEIDA+ Y+DE  E+GGFGG++ KVEV++KI HEGEVNRARYMP N  +VATK  S++V+VFDI+KHPS P       P++   GH +EGYGL W P     L+SGSDD  VC WD+  AG+ VE +  + GHT V+EDVAWH  H  LFGSV DDK L +WD+R            AH+  VNCLSFSP S++L  TGS+D++V LWD+R+LS+ LHTF GH D VFQV+W+P +E + ASC  DRR++VWD++KIGEEQS EDA DGPPELLFIHGGHTAK+SD +WN  DPWVVASVAEDN+LQIWQMA+NIY
Sbjct:    6 ESPASDTEDAAQERVIAEEYKIWKKNTPFLYDLVMTHALEWPSLSVQWLPTAHTS-SGKDYSSHKLLLGTHTSDGAQNYLMVAEVRLPLEDTEIDARNYDDESAELGGFGGVSGKVEVQIKINHEGEVNRARYMPSNELIVATKTVSSEVYVFDISKHPSTPAEGTGCNPDYRLLGHTKEGYGLCWDPHQAHHLISGSDDGIVCEWDLANAGKTVEPLNKYTGHTDVIEDVAWHMHHQKLFGSVGDDKKLLIWDMRLKSYDKPMTSINAHDGEVNCLSFSPFSEYLLATGSSDQTVNLWDMRNLSSKLHTFSGHSDGVFQVEWSPHNETILASCSQDRRMHVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNDPWVVASVAEDNVLQIWQMAENIY 411          
BLAST of EWM21435.1 vs. NCBI_GenBank
Match: gi|1173957558|gb|OQS04059.1| (histone-binding protein RBBP4 [Thraustotheca clavata])

HSP 1 Score: 540.036 bits (1390), Expect = 0.000e+0
Identity = 251/420 (59.76%), Postives = 313/420 (74.52%), Query Frame = 0
Query:    3 ETDAPDQE-RQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYMMEEEEEEMG 421
            E+ A D E      Q+++IAEEYKIWKKN+PFLYDLVMTHALEWPSLTVQWLP   T+  N +Y++HKLL GTHT+   QNYL+ A V LPL DTEIDA+ Y+DE  E+GGFGG + KVEV++KI H+GEVNRARYMP N  +VATK  S++V+VFDI+KHPS P       P+    GH +EGYGL W+P     L+SGSDD  VC WD+  AG+ V+ +  + GHT V+EDVAWH  H  LFGSV DDK L +WD+R            AH+  VNCL+FSP S++L  TGS+D++V LWD+R+LS+ LHTF GH D V+QV+W+P +E + ASC  DRR++VWD++KIGEEQS EDA DGPPELLFIHGGHT+K+SD +WN  DPWVVASVAEDN+LQIWQMA+NIY  E +E+E+ 
Sbjct:    6 ESPASDAEDTTSSTQERVIAEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPSFHTSSGN-DYSSHKLLLGTHTSGDAQNYLMVAEVRLPLEDTEIDARNYDDESAELGGFGGASGKVEVQIKINHDGEVNRARYMPSNELIVATKTISSEVYVFDISKHPSTPAEGTGCNPDFCLLGHTKEGYGLCWNPHQAHHLISGSDDGVVCEWDLANAGKQVQPLNKYTGHTDVIEDVAWHMHHQKLFGSVGDDKKLLIWDMRHKSYDKPMTSINAHDGEVNCLAFSPFSEYLLATGSSDQTVNLWDMRNLSSKLHTFSGHSDGVYQVEWSPHNETILASCSQDRRMHVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTSKISDFSWNSNDPWVVASVAEDNVLQIWQMAENIYNEEADEDEVA 424          
BLAST of EWM21435.1 vs. NCBI_GenBank
Match: gi|813173752|ref|XP_012204901.1| (histone-binding protein RBBP4 [Saprolegnia parasitica CBS 223.65] >gi|641530167|gb|KDO24304.1| histone-binding protein RBBP4 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 537.724 bits (1384), Expect = 0.000e+0
Identity = 247/410 (60.24%), Postives = 310/410 (75.61%), Query Frame = 0
Query:    5 DAPDQERQD---EAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIY 411
            ++P  + +D    AQ+++IAEEYKIWKKN+PFLYDLVMTHALEWPSL+VQWLP   T+    +Y++HKLL GTHT+ G QNYL+ A V LPL DTEIDA+ Y+DE  E+GGFGG++ KVEV++KI H+GEVNRARYMP N  +VATK  S++V+VFDI+KHPS P       P++   GH +EGYGL W P     L+SGSDD  VC WD+  AG+ V+ +  + GHT ++EDVAWH  H  LFGSV DDK L +WD+R            AH+  VNC+SFSP S++L  TGS+D++V LWD+R+LS+ LHTF GH D VFQV+W+P +E + ASC  DRR++VWD++KIGEEQS EDA DGPPELLFIHGGHTAK+SD +WN  DPWVVASVAEDN+LQIWQMA+NIY
Sbjct:    6 ESPTSDAEDASTSAQERVIAEEYKIWKKNTPFLYDLVMTHALEWPSLSVQWLPSSHTSSGQ-DYSSHKLLLGTHTSDGAQNYLMVAEVRLPLEDTEIDARNYDDESAELGGFGGVSGKVEVQIKINHDGEVNRARYMPSNELIVATKTVSSEVYVFDISKHPSTPAEGTGCNPDYRLLGHTKEGYGLCWDPHQAHHLISGSDDGVVCEWDLANAGKTVQPLNKYTGHTDIIEDVAWHMHHQKLFGSVGDDKKLLIWDMRLKSYDKPMTSINAHDSEVNCVSFSPFSEYLLATGSSDKTVNLWDMRNLSSKLHTFSGHSDGVFQVEWSPHNETILASCSQDRRMHVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNDPWVVASVAEDNVLQIWQMAENIY 414          
BLAST of EWM21435.1 vs. NCBI_GenBank
Match: gi|669172485|ref|XP_008621591.1| (histone-binding protein RBBP4 [Saprolegnia diclina VS20] >gi|530726744|gb|EQC24986.1| histone-binding protein RBBP4 [Saprolegnia diclina VS20])

HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 247/410 (60.24%), Postives = 310/410 (75.61%), Query Frame = 0
Query:    5 DAPDQERQD---EAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIY 411
            ++P  + +D    AQ+++IAEEYKIWKKN+PFLYDLVMTHALEWPSL+VQWLP   T+    +Y++HKLL GTHT+ G QNYL+ A V LPL DTEIDA+ Y+DE  E+GGFGG++ KVEV++KI H+GEVNRARYMP N  +VATK  S++V+VFDI+KHPS P       P++   GH +EGYGL W P     L+SGSDD  VC WD+  AG+ V+ +  + GHT ++EDVAWH  H  LFGSV DDK L +WD+R            AH+  VNC+SFSP S++L  TGS+D++V LWD+R+LS+ LHTF GH D VFQV+W+P +E + ASC  DRR++VWD++KIGEEQS EDA DGPPELLFIHGGHTAK+SD +WN  DPWVVASVAEDN+LQIWQMA+NIY
Sbjct:    6 ESPTSDAEDASTSAQERVIAEEYKIWKKNTPFLYDLVMTHALEWPSLSVQWLPSSHTSSGQ-DYSSHKLLLGTHTSDGAQNYLMVAEVRLPLEDTEIDARNYDDESAELGGFGGVSGKVEVQIKINHDGEVNRARYMPSNELIVATKTVSSEVYVFDISKHPSTPAEGTGCNPDYRLLGHTKEGYGLCWDPHQAHHLISGSDDGVVCEWDLANAGKTVQPLNKYTGHTDIIEDVAWHMHHQKLFGSVGDDKKLLIWDMRLKSYDKPMTSINAHDGEVNCVSFSPFSEYLLATGSSDKTVNLWDMRNLSSKLHTFSGHSDGVFQVEWSPHNETILASCSQDRRMHVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNDPWVVASVAEDNVLQIWQMAENIY 414          
BLAST of EWM21435.1 vs. NCBI_GenBank
Match: gi|698818629|ref|XP_009842343.1| (histone-binding protein RBBP4, variant [Aphanomyces astaci] >gi|574102494|gb|ETV68044.1| histone-binding protein RBBP4, variant [Aphanomyces astaci])

HSP 1 Score: 531.561 bits (1368), Expect = 0.000e+0
Identity = 247/414 (59.66%), Postives = 307/414 (74.15%), Query Frame = 0
Query:    2 AETDAPDQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMTQAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYMMEE 415
            A  D  + + ++ AQ+++IAEEYKIWKKN+PFLYDLVMTHAL+WP+LTVQWLP V T   N +Y++HKLL GTHT    QNYL+ A V LPL DTEIDA+ Y+D+  E+GGFGG + KVEV++KI H GEVNRARYMPQN  +VATK  S+DV++FDI+KHPS P       P+  C GH +EGYGL W P     L+SGSDD  VC WD+  AG+ V  +  + GHT V+ DVAWH  H  LFGSV DDK L +WD+R            AH+  VN LSFSP S++L  TGS+D++V LWD+R+LS+ LHTF GH +EV+QV+W+P +E +  SC  DRR++VWD++KIGEEQS EDA DGPPELLFIHGGHTAK+SD +WN  DPWVVASV+EDNILQIWQMA+NIY  E+
Sbjct:    9 AHADDNESDVEETAQERVIAEEYKIWKKNTPFLYDLVMTHALDWPALTVQWLPNVHTHSGN-DYSSHKLLLGTHTDNESQNYLMVAEVRLPLEDTEIDARNYDDDSSELGGFGGASGKVEVQIKINHAGEVNRARYMPQNDLIVATKTVSSDVYIFDISKHPSTPAEGSGCNPDFRCIGHTKEGYGLCWDPHQTHHLISGSDDGIVCEWDLANAGKQVHPLNKYTGHTDVIGDVAWHMHHQKLFGSVGDDKKLLIWDMRLKSFDKPLTSVNAHDAPVNSLSFSPFSEYLLATGSSDKTVNLWDMRNLSSKLHTFAGHSEEVYQVEWSPHNETILGSCSQDRRLHVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNDPWVVASVSEDNILQIWQMAENIYNEEQ 421          
BLAST of EWM21435.1 vs. NCBI_GenBank
Match: gi|1143364531|ref|XP_019935515.1| (PREDICTED: histone-binding protein RBBP7 isoform X2 [Paralichthys olivaceus])

HSP 1 Score: 529.25 bits (1362), Expect = 0.000e+0
Identity = 243/412 (58.98%), Postives = 316/412 (76.70%), Query Frame = 0
Query:    8 DQERQDEA-QDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDM---TQAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGSQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYMMEE 415
            D+E  D+A ++++I EEYKIWKKN+PFLYDLVMTHALEWPSLTVQWLP V+  E   +YA H+L+ GTHT+  EQN+L+ A+V +P  D ++DA  Y+ E+GE GGFG ++ K+E+++KI HEGEVNRARYMPQNPF++ATK P+ DV VFD TKHP  P P+    P+   KGH +EGYGL+W+P   G LLS SDD  +CLWD+    + G+VV+   +F GHT+VVEDV+WH  H  LFGSV+DD+ L +WD R + +  +     AH   VNCLSF+P+S+F+  TGSAD++V LWDLR+L   LH+FE H+DE+FQV+W+P +E + AS G DRR+NVWD++KIGEEQS EDA DGPPELLFIHGGHTAK+SD +WN  +PWV+ SV+EDNI+Q+WQMA+NIY  EE
Sbjct:    3 DKEVYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVRRPEGK-DYAVHRLVLGTHTS-DEQNHLVIASVQVPNDDAQLDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPFIIATKTPTCDVLVFDYTKHPPKPDPSGECNPDMRLKGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDIGSGPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKASHAVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEE 412          
BLAST of EWM21435.1 vs. NCBI_GenBank
Match: gi|919067901|ref|XP_013415473.1| (PREDICTED: histone-binding protein RBBP7 isoform X1 [Lingula anatina])

HSP 1 Score: 529.25 bits (1362), Expect = 0.000e+0
Identity = 246/412 (59.71%), Postives = 315/412 (76.46%), Query Frame = 0
Query:    8 DQERQDEAQDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMT---QAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESG-SQPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYMMEE 415
            DQ   D  ++++I EEYKIWKKN+PFLYDLVMTHALEWPSLT QWLP V   E   +Y+ H+L+ GTHT+  EQN+L+ A+V LP  + + DA  Y+ E+GE GGFG ++ K+E+++KI HEGEVNRARYMPQNP V+ATK PS+DV VFD TKHPS P P+   +PE   KGH +EGYGL+W+P   G LLS SDD  +CLWD+    + GRV++   +F GHTSVVEDV+WH  H  LFGSV+DD+ L +WD R +  S+PSH    AH   VNCLSF+P+S+F+  TGSAD++V LWDLR+L   LH+FE H+DE+FQV+W+P +E + AS G DRR++VWD++KIGE+QS EDA DGPPELLFIHGGHTAK+SD +WN  +PWV+ SV+EDNI+Q+WQMA+NIY  EE
Sbjct:   21 DQSFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGK-DYSIHRLILGTHTS-DEQNHLLIASVQLPNDNAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPSGECQPELRLKGHQKEGYGLSWNPNLNGNLLSASDDHTICLWDINANPKEGRVIDAQTIFTGHTSVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHT-VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEE 429          
BLAST of EWM21435.1 vs. NCBI_GenBank
Match: gi|831287632|ref|XP_012675183.1| (PREDICTED: histone-binding protein RBBP7 isoform X3 [Clupea harengus])

HSP 1 Score: 529.25 bits (1362), Expect = 0.000e+0
Identity = 244/415 (58.80%), Postives = 322/415 (77.59%), Query Frame = 0
Query:    8 DQERQDEA-QDKMIAEEYKIWKKNSPFLYDLVMTHALEWPSLTVQWLPGVKTAENNPEYATHKLLFGTHTAAGEQNYLIQANVNLPLPDTEIDAKKYEDERGEVGGFGGMNCKVEVKVKIAHEGEVNRARYMPQNPFVVATKGPSADVFVFDITKHPSAPGPNDSFRPEHVCKGHAREGYGLAWSPAAPGQLLSGSDDARVCLWDMT---QAGRVVEEVRVFRGHTSVVEDVAWHSAHPHLFGSVSDDKSLALWDVRESGS-QPSHARAGAHEDFVNCLSFSPHSDFLFLTGSADRSVRLWDLRSLSAPLHTFEGHEDEVFQVKWAPFHENVFASCGADRRVNVWDIAKIGEEQSQEDAADGPPELLFIHGGHTAKVSDLAWNEEDPWVVASVAEDNILQIWQMADNIYMMEEEE 417
            D+E  D+A ++++I EEYKIWKKN+PFLYDLVMTHALEWPSLTVQWLP V   E   +YA H+L+ GTHT+  EQN+L+ A+V +P  D + DA  Y+ E+GE GGFG ++ K+E+++KI HEGEVNRARYMPQNP ++ATK P++DV VFD TKHPS P P+    P+   +GH +EGYGL+W+P   G LLS SDD  +CLWD++   + G++++   +F GHT+VVEDV+WH  H  LFGSV+DD+ L +WD R + + +PSHA   AH   VNCLSF+P+S+F+  TGSAD++V LWDLR+L   LH+FE H+DE+FQV+W+P +E + AS G DRR+NVWD++KIGEEQS EDA DGPPELLFIHGGHTAK+SD +WN  +PWV+ SV+EDNI+Q+WQMA+NIY  EE++
Sbjct:    3 DKEVYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVNRPEGK-DYAVHRLVLGTHTS-DEQNHLVIASVQIPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISASPKEGKIIDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTAKPSHA-VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEQD 414          
The following BLAST results are available for this feature:
BLAST of EWM21435.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101664|gb|EWM21435.1|0.000e+0100.00retinoblastoma binding protein 4 [Nannochloropsis ... [more]
gi|553183552|ref|XP_005853921.1|0.000e+099.76retinoblastoma binding protein 4, partial [Nannoch... [more]
gi|1173952939|gb|OQS00514.1|0.000e+061.67histone-binding protein RBBP4 [Achlya hypogyna][more]
gi|1173957558|gb|OQS04059.1|0.000e+059.76histone-binding protein RBBP4 [Thraustotheca clava... [more]
gi|813173752|ref|XP_012204901.1|0.000e+060.24histone-binding protein RBBP4 [Saprolegnia parasit... [more]
gi|669172485|ref|XP_008621591.1|0.000e+060.24histone-binding protein RBBP4 [Saprolegnia diclina... [more]
gi|698818629|ref|XP_009842343.1|0.000e+059.66histone-binding protein RBBP4, variant [Aphanomyce... [more]
gi|1143364531|ref|XP_019935515.1|0.000e+058.98PREDICTED: histone-binding protein RBBP7 isoform X... [more]
gi|919067901|ref|XP_013415473.1|0.000e+059.71PREDICTED: histone-binding protein RBBP7 isoform X... [more]
gi|831287632|ref|XP_012675183.1|0.000e+058.80PREDICTED: histone-binding protein RBBP7 isoform X... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9270rna9270Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications