rna9269, rna9269 (mRNA) Nannochloropsis gaditana

Overview
Namerna9269
Unique Namerna9269
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2277
Alignment locationKK037252.1:250435..252269 -

Link to JBrowse

Properties
Property NameValue
ProductUncharacterized protein family UPF0406
Orig transcript idgnl|cribi|Naga_100307g3.2279.mrna
Orig protein idgnl|cribi|Naga_100307g3.2279
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:250435..252269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100307g3gene8991Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21434.1cds9239Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9269rna9269-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9269 ID=rna9269|Name=rna9269|organism=Nannochloropsis gaditana|type=mRNA|length=2277bp
CATCACTACAGATTGTCGGGCGGTGCGGGGCCAGGAATTGCTTGGGCAGA
GGGTCATAGAAAGCGGCTCCCAGTTTGAGGTGTATCAAGCAAATAGCGAT
CGAACCTTGATGAGCATGCTTTCCTCACGACGCCGCGCCGCGGTACCAAA
CTTTGTAATGCTCGGTCAACGATGGCTTGCTGTGTCCCCATCACCATACT
TGCGGGCGTTGTCGACAAAACCGCCCCTTTCCTCGCGCCCTCCCAACCTG
TACAAGGCTCCTCCTCCAGGCCCTAAAGCTCCACGAGGCAACCCCCCTCC
TCCCGCCGGCCCCGAGCCGCCCGCTCAGAAAGCATCCGGCGGATTCGGCT
TGGGCGCAGCTCTTGGCATGATTGTGCTCGCTGGCGGGACTGCCGCAACG
GGGTATTACTATGTGCTTGCGGACCAAAATGAGAAATCTCAAATGGAGGG
TTACCTCGCGAAAGTCAAGTCAACCGTAGGCCTGCCCCCCCCCTTGAGAT
CGAGACACCACCGACTGGAGATGCCACGAGCAATCGAGAAAATGAAGTGA
AGAACGCAAAAGGCGATGTTGAAGCAGCTACTGCCGGGGCTGCGGCAAGT
GTGAAGACAGAGCTTCAGAAAGCTACGACACGGGCATCACAGGCGGTGCA
TGCCGTCGAGGAAAAGGTCGCCACCGCACTGCGGGGGGGCAAAGAGGCTC
CTACGTCCGGTAGAGAAAATAGTATGGGTGCATCAGTGAAAAAGGGAGGG
GCGGAGGATGGGGATGACGGAGGTGCAGAGCTGTCGGAGAAGGTGAAGGA
GGCGGCGGGGGAGGTGGAGGGAGAGGTCCGTTCCGCCGTCGAAAATGCCG
AGCACCTTGCAGCCCAGATAATCTCTGACATCGAGGATCGTGCGAAGAAG
GAGGAAGACCCGGGCGCGGTGGCCACGGAGGAAGGAGAGAACAAGGCAGC
CGGGGCGCCCACCGAGTCGGCCCTAGGGAGGAAGCAGGCGGAAGCGGCTC
TCAAGCACTTTGCCGGCTACGAGTCTCGGGGGAAGGAGCTTCGCTTCGAC
ACGCTGACGCGTGCCGCGGAAGAGGCCTTGGCCCAGGGGGAGGCCCTCCG
CAACCACCTGGAGCAGACCCTCCTGAAGGACCTGGCAGTCTTGAGTAACG
AAGCCTTGCAACTCAGAGTCGTTCAGCTGGTGGGGGAGCTGCAGGAGCGC
ACGAAATGGGAGGCACTGCGCTTGCACGAGGCAGTGCGGAAGGCGGAGAT
GGAGGTGAGCGGGAAATACGTGGAGCTGATCCGAAAATTGCGCGAAGAAA
GCGTGGAGGAGGTAGGTCGACAAAGCCGGGCGTTAGAGGCGGAGAAGCAA
GTGGCGCTGTTGAAGGCGATGGAGGAGAAGGACAAGGCATGCAAGACGCT
CTTAGAGGAGGAGATGCGCTCTTTTACCGCCAATGTGACGGCGGCGTTCG
AGCAGGAGCGGGCGCAGGATCGGGCCCTGGTGGAGGCCCAAGCCAAGCGG
GAGCTAGAGAACGTCCTGTACGAGAGGGAGACCGGCTACCAAGCCGCCTT
GGCCGGGCGGTTGGAGGAGCTGGGGCGGCTCAAGGGAGAGGTGGAGGCGT
TGGAAGCGGTTTTTGAGACGGACACGGACTACGAACACGTGTCCTGGAAG
GTGCACAGGGTGAGCGCCGCCTTGCTGGCCTTTGAATTGGCGTTACAAAG
CTCCCAGCCGTTACGCAGGGAGATCGCGGCCCTCCAGCACGTGACCAAGG
GTGACCCTGTGCTGGACGCAGTGCTCGCCGGCCTTCCGCCCGCGGCTTCC
GAGGGTGTGCCCACCCCGTCGGAGCTCCAGGTCCGCTTCCCCATGGTGCA
AAAAGCGGCGCGAGAGGCGGCTTTCGTCCCCGAGTCGAGCCCCGGGATGG
TCGGGCACATGTTCGCCGGCCTTCTAGCGGCCGTCACCATCCAGCCACGG
GGTCTGGTGGAAGGCTCGGGGGCCGACGAGACGCTGGCACGGGCGGCCTA
CCACGTGGAGCGCGGGCACCTAGCCGAGGCAGTGCAGGAGCTGGAAGGCC
TGGGGGGGTTGGCGGGTCGGACGGTGGAGGATTGGTTGCAAGACGCGCGG
GGAAGATTGGAACTGACGCAGGCGGCGCGGGCGATGAATGCCCGCTCTGC
CTTGTTGAATGTTAGCATGGTATAGAGGGGGGATAGAGGACGGGACGCGA
GGGAGCGGGGGCGTGCGAGCGGAGGCGCTGTCGGCGGGAGGGGGAACCCC
GTAAAGAAGAAGTAGACCACATAGCGA
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protein sequence of rna9269

>rna9269-protein ID=rna9269-protein|Name=rna9269|organism=Nannochloropsis gaditana|type=polypeptide|length=290bp
MEGLLNMYDTSDEDGNNSDAEARNKAVLDDRVSYTPLFLGTAARADPPSS
PPRKQPVLNSFHRAQRALTTVQKRLRPSSNLPGLDQDFFHVSAEHVYTTV
LTNGKRRSLPARRAPSSSSSSSRSDGQPLASVSSVDWIRSVPHFEGNWAT
HVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGRQEKKELVEN
DLNPIPSADSSDEDEEEEEGAGEEEGRERRHLPSDQEASGQHLSLSRTVY
LRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGRVCS
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mRNA from alignment at KK037252.1:250435..252269-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9269 ID=rna9269|Name=rna9269|organism=Nannochloropsis gaditana|type=mRNA|length=1835bp|location=Sequence derived from alignment at KK037252.1:250435..252269- (Nannochloropsis gaditana)
CAGAGACAGCTTGAGTGTCGCTGGCCGCGCCTAGCACCGGAGGCACTGCA
ACCCAAATGGACGCAGGACACCTTGCAAAGTAGACAGCCACAAAATTCAT
ACGGAAATTCACTGCATGGCATGTGAGCCGCTGATTTGAGCACAACGCGC
GAATGACTCTCCTTTCCCGACTGTGCAGTTGGGCAAGATGATGACGTACC
CCTTTCCAATCACATTTGTTCTCCTTTCCAACAATAATATGACAAGGCAA
TACCAGCAGTTCGCATCTACCTCGAAGTACACTATTTAATTAAGCTGGTG
CTTGCCACGCAAGGAGCCAAACTTGGCTGGGTGCCTATCCCTGTACAGGA
TATTCTTTACAGCGCATGGGAAGTGATCGAAATAGCGATGGAGGGTCTGC
TGAATATGTATGACACCTCTGACGAGGACGGGAATAACAGTGATGCGGAG
GCACGCAACAAGGCCGTACTTGACGACAGGGTTTCCTATACCCCCCTTTT
CCTTGGAACTGCCGCCCGTGCTGATCCTCCCTCCTCACCTCCCCGTAAGC
AACCCGTTTTGAATTCCTTTCATCGCGCTCAAAGAGCCTTGACGACTGTC
CAGAAGCGACTCCGTCCCTCCTCCAACTTGCCAGGACTCGACCAAGACTT
CTTCCATGTCTCGGCAGAACACGTTTACACCACGGTATTGACCAACGGGA
AACGCCGAAGCCTTCCGGCCCGCCGAGCTCCGTCGTCCTCCTCCTCCTCC
TCCCGCTCCGACGGCCAGCCTCTTGCCTCGGTATCCTCCGTAGATTGGAT
TCGAAGCGTCCCGCACTTTGAAGGGAACTGGGCAACGCATGTGTACATCA
CCGTGCCCAACACCAGGGAGGTGGTGCGAATGGCGAAGGCATGCGTTCAG
GAGGCTCGGCGGCGGTTGAGGAATGTCCTCGGCACCGAGACAGGAGGCGA
GGAAGGACGGCAAGAAAAGAAGGAGCTGGTCGAGAATGACTTGAACCCGA
TCCCTTCGGCTGACTCTTCGGATGAAGACGAGGAGGAGGAGGAGGGGGCG
GGGGAGGAGGAAGGGAGAGAGCGCCGACATCTTCCTTCGGACCAGGAGGC
GTCCGGGCAGCACCTCAGCCTCTCTCGCACCGTCTATCTCCGCTCTTACC
ACATGGAGCCGTTCGTGGCCGATCTGGGCAAGGCCTTGGCGTGGGCCAGG
GCCTTCACCTTCAGGCTGGCCTGGCGCCGAGGACGAGGGGGGGGGAGGGT
TTGCTCGTGAACGATGACAGGTCACGGTCCTTCGTGACGGTGCCTGTGGA
GGAAGGGGGGGAAGGGCGGCTCCGTCAGCTGGTGGAGAGCGTGGACGAGG
TCTTGGTCAAGTATCGGCAGCCCCCTTACTACCGCGGGGCCCTTTTCCAC
ATCTCTGTGGCCGCTGTGAAGGGAGACGTGTCGGAGGCCTGGGGGGCGGG
GGCCCGGGCGGGGAAGGGGGAGGAGGAGGAGGAAGGGGAAGAGGAGGAGG
GGGAGGGGGAGGAGTACGCGGCATCGGTTAAGGTGGATAGGGTGGAGTGC
CGTATCGGACATAAACTGTACGAGGTCAAATTGAGAGAGTAGGGGGGCAG
GCCGGGATGTGTGGCTCGAGTGGCAGAAAAACGGAAAGGGAGAGAACCTA
TAAGAGGAGGTAGAAGCGGCTTGGCGGGGGGCTGAAGGAGGACTTTTGGA
TGCAGGGAGGGGGTAATATGGTCCAAAGATAGATGACATGGATGGCGACA
CAAGCACCATGTACATCGATGCCGCCAACATTGTTGGCGGTATGGAAAGA
AAGCCTATCAAGCCGCGTCACGGCCCTGCTTATTG
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Coding sequence (CDS) from alignment at KK037252.1:250435..252269-

>rna9269 ID=rna9269|Name=rna9269|organism=Nannochloropsis gaditana|type=CDS|length=873bp|location=Sequence derived from alignment at KK037252.1:250435..252269- (Nannochloropsis gaditana)
ATGGAGGGTCTGCTGAATATGTATGACACCTCTGACGAGGACGGGAATAA
CAGTGATGCGGAGGCACGCAACAAGGCCGTACTTGACGACAGGGTTTCCT
ATACCCCCCTTTTCCTTGGAACTGCCGCCCGTGCTGATCCTCCCTCCTCA
CCTCCCCGTAAGCAACCCGTTTTGAATTCCTTTCATCGCGCTCAAAGAGC
CTTGACGACTGTCCAGAAGCGACTCCGTCCCTCCTCCAACTTGCCAGGAC
TCGACCAAGACTTCTTCCATGTCTCGGCAGAACACGTTTACACCACGGTA
TTGACCAACGGGAAACGCCGAAGCCTTCCGGCCCGCCGAGCTCCGTCGTC
CTCCTCCTCCTCCTCCCGCTCCGACGGCCAGCCTCTTGCCTCGGTATCCT
CCGTAGATTGGATTCGAAGCGTCCCGCACTTTGAAGGGAACTGGGCAACG
CATGTGTACATCACCGTGCCCAACACCAGGGAGGTGGTGCGAATGGCGAA
GGCATGCGTTCAGGAGGCTCGGCGGCGGTTGAGGAATGTCCTCGGCACCG
AGACAGGAGGCGAGGAAGGACGGCAAGAAAAGAAGGAGCTGGTCGAGAAT
GACTTGAACCCGATCCCTTCGGCTGACTCTTCGGATGAAGACGAGGAGGA
GGAGGAGGGGGCGGGGGAGGAGGAAGGGAGAGAGCGCCGACATCTTCCTT
CGGACCAGGAGGCGTCCGGGCAGCACCTCAGCCTCTCTCGCACCGTCTAT
CTCCGCTCTTACCACATGGAGCCGTTCGTGGCCGATCTGGGCAAGGCCTT
GGCGTGGGCCAGGGCCTTCACCTTCAGGCTGGCCTGGCGCCGAGGACGAG
GGGGGGGGAGGGTTTGCTCGTGA
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Synonyms
Publications