EWM21434.1, cds9239 (CDS) Nannochloropsis gaditana

Overview
NameEWM21434.1
Unique Namecds9239
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:251010..251882 -

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Properties
Property NameValue
Protein idEWM21434.1
ProductUncharacterized protein family UPF0406
Orig transcript idgnl|cribi|Naga_100307g3.2279.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:251010..251882 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0034477U6 snRNA 3'-end processing
Vocabulary: INTERPRO
TermDefinition
IPR027521Usb1
Homology
[Close]
BLAST of EWM21434.1 vs. NCBI_GenBank
Match: gi|585101663|gb|EWM21434.1| (Uncharacterized protein family UPF0406 [Nannochloropsis gaditana])

HSP 1 Score: 594.734 bits (1532), Expect = 0.000e+0
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0 
Query:    1 MEGLLNMYDTSDEDGNNSDAEARNKAVLDDRVSYTPLFLGTAARADPPSSPPRKQPVLNSFHRAQRALTTVQKRLRPSSNLPGLDQDFFHVSAEHVYTTVLTNGKRRSLPARRAPSSSSSSSRSDGQPLASVSSVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGRQEKKELVENDLNPIPSADSSDEDEEEEEGAGEEEGRERRHLPSDQEASGQHLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGRVCS 290
            MEGLLNMYDTSDEDGNNSDAEARNKAVLDDRVSYTPLFLGTAARADPPSSPPRKQPVLNSFHRAQRALTTVQKRLRPSSNLPGLDQDFFHVSAEHVYTTVLTNGKRRSLPARRAPSSSSSSSRSDGQPLASVSSVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGRQEKKELVENDLNPIPSADSSDEDEEEEEGAGEEEGRERRHLPSDQEASGQHLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGRVCS
Sbjct:    1 MEGLLNMYDTSDEDGNNSDAEARNKAVLDDRVSYTPLFLGTAARADPPSSPPRKQPVLNSFHRAQRALTTVQKRLRPSSNLPGLDQDFFHVSAEHVYTTVLTNGKRRSLPARRAPSSSSSSSRSDGQPLASVSSVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGRQEKKELVENDLNPIPSADSSDEDEEEEEGAGEEEGRERRHLPSDQEASGQHLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGRVCS 290
[Close]
BLAST of EWM21434.1 vs. NCBI_GenBank
Match: gi|298708847|emb|CBJ30805.1| (similar to Chromosome 16 open reading frame 57 [Ectocarpus siliculosus])

HSP 1 Score: 73.559 bits (179), Expect = 1.955e-11
Identity = 49/146 (33.56%), Postives = 76/146 (52.05%), Query Frame = 0 
Query:  134 SVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRL----RNVLGTETGGEEGRQEKKELVENDLNPIPSADSSDEDEEEEEGAGEEEGRERRHLPSDQEASG-QHLSLSRTVYLRSYHMEPFVADLGKALAWARAFT 274
            ++ W+R  PH  GNW THV+I VPN+     MA+A V   R+RL    R   G   GG+ G++  ++                 ++     AG+ +  E   + +D + SG QHLSLS+T  LR++ + PFV  L +A+  +R+FT
Sbjct:   70 NIRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWREGHGRAEGGKGGKKRTRD------------GRQRSNQASASSAGKLDPPEV--VMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFT 201
The following BLAST results are available for this feature:
BLAST of EWM21434.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101663|gb|EWM21434.1|0.000e+0100.00Uncharacterized protein family UPF0406 [Nannochlor... [more]
gi|298708847|emb|CBJ30805.1|1.955e-1133.56similar to Chromosome 16 open reading frame 57 [Ec... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9269rna9269Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications