EWM21461.1, cds9213 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|553181774|ref|XP_005853622.1| (small subunit ribosomal protein S11e [Nannochloropsis gaditana CCMP526] >gi|422295434|gb|EKU22733.1| small subunit ribosomal protein S11e [Nannochloropsis gaditana CCMP526] >gi|585101691|gb|EWM21461.1| 40s ribosomal protein [Nannochloropsis gaditana]) HSP 1 Score: 364.385 bits (934), Expect = 1.517e-127 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 Query: 1 MVAEKVSKRGGYREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176 MVAEKVSKRGGYREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF Sbjct: 1 MVAEKVSKRGGYREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|676381241|ref|XP_009033899.1| (hypothetical protein AURANDRAFT_21483 [Aureococcus anophagefferens] >gi|676397911|ref|XP_009042233.1| hypothetical protein AURANDRAFT_34507 [Aureococcus anophagefferens] >gi|323447119|gb|EGB03069.1| hypothetical protein AURANDRAFT_34507 [Aureococcus anophagefferens] >gi|323455673|gb|EGB11541.1| hypothetical protein AURANDRAFT_21483 [Aureococcus anophagefferens]) HSP 1 Score: 244.973 bits (624), Expect = 1.996e-80 Identity = 114/167 (68.26%), Postives = 137/167 (82.04%), Query Frame = 0 Query: 10 GGYREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176 G +REA+Q EKAYQ Q VF+ ++ +K+SK G R+ R VGLGFKTPK A G+YVDKKCPFTG+VSIRGRILKG+V+STKM RT++IRRDYL+W KY RFEKRHKN++ HCSP F VKEGDIVTVGQCRPL+KTVRFNVL HEP++NQ+L++KK FRVF Sbjct: 5 GTFREAEQTEKAYQKQDAVFI----GRKRALAKKSKKGMRYVRNVGLGFKTPKLALEGSYVDKKCPFTGNVSIRGRILKGMVISTKMKRTLVIRRDYLNWCGKYRRFEKRHKNMSVHCSPCFENVKEGDIVTVGQCRPLTKTVRFNVLTHEPAVNQSLNVKKVFRVF 167
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|298708385|emb|CBJ48448.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 234.572 bits (597), Expect = 4.261e-76 Identity = 115/167 (68.86%), Postives = 135/167 (80.84%), Query Frame = 0 Query: 12 YREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKH-GARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLST-KMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176 YREA+QHEKAYQ Q +F+ K R G K +K G R+ + VGLGFKTPK A+ GTYVDKKCPFTG VSIRGRILKG+V+S KM TI+IRRDYLH+VSKY RFEKRHKN+ HC+P + VKEGDIVT+GQCRPLSKTVRFNVL+HEP IN A+S++KQFR+F Sbjct: 28 YREAEQHEKAYQKQDAIFVGAK---RVLGKKVAKSKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVSVRKQFRMF 191
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|1210515325|dbj|GAX25777.1| (small subunit ribosomal protein S11e [Fistulifera solaris] >gi|1210525779|dbj|GAX15385.1| small subunit ribosomal protein S11e [Fistulifera solaris]) HSP 1 Score: 220.32 bits (560), Expect = 9.331e-71 Identity = 112/165 (67.88%), Postives = 127/165 (76.97%), Query Frame = 0 Query: 12 YREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176 Y E DQHEKAYQ Q VF+ + R G +K RW + VGLG KTP A G YVDKKCPFTG+VSIRGRILKG+V+STKM RTI++RRDYLH++ KY RFEKRHKN+A HCSPAFP VKEGDIVTVGQCRPLSKTVRFNVL HEP + ++ KK FRVF Sbjct: 8 YVECDQHEKAYQKQDAVFV---ARKRAIGGADNK-PMRWFKSVGLGIKTPAAAIEGNYVDKKCPFTGNVSIRGRILKGLVISTKMKRTIVVRRDYLHFIRKYRRFEKRHKNIAVHCSPAFP-VKEGDIVTVGQCRPLSKTVRFNVLAHEP--QRVIAGKKSFRVF 165
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|301105230|ref|XP_002901699.1| (40S ribosomal protein S11 [Phytophthora infestans T30-4] >gi|675209237|ref|XP_008913503.1| archaeal ribosomal protein S17P [Phytophthora parasitica INRA-310] >gi|695380020|ref|XP_009516691.1| hypothetical protein PHYSODRAFT_353636 [Phytophthora sojae] >gi|695380064|ref|XP_009516703.1| hypothetical protein PHYSODRAFT_353660 [Phytophthora sojae] >gi|262100703|gb|EEY58755.1| 40S ribosomal protein S11 [Phytophthora infestans T30-4] >gi|348689602|gb|EGZ29416.1| hypothetical protein PHYSODRAFT_353636 [Phytophthora sojae] >gi|348689614|gb|EGZ29428.1| hypothetical protein PHYSODRAFT_353660 [Phytophthora sojae] >gi|566011901|gb|ETI34812.1| archaeal ribosomal protein S17P [Phytophthora parasitica P1569] >gi|566011920|gb|ETI34831.1| archaeal ribosomal protein S17P [Phytophthora parasitica P1569] >gi|568086284|gb|ETN01176.1| archaeal ribosomal protein S17P [Phytophthora parasitica INRA-310] >gi|570315624|gb|ETO63572.1| archaeal ribosomal protein S17P [Phytophthora parasitica P1976] >gi|570315625|gb|ETO63573.1| archaeal ribosomal protein S17P [Phytophthora parasitica P1976] >gi|570939413|gb|ETP04670.1| archaeal ribosomal protein S17P [Phytophthora parasitica CJ01A1] >gi|570969699|gb|ETP32818.1| archaeal ribosomal protein S17P [Phytophthora parasitica P10297] >gi|953501688|emb|CEG37137.1| archaeal ribosomal protein s17p [Plasmopara halstedii]) HSP 1 Score: 219.55 bits (558), Expect = 1.323e-70 Identity = 111/163 (68.10%), Postives = 133/163 (81.60%), Query Frame = 0 Query: 15 ADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEP-SINQALSIKKQFRVF 176 DQ EKAYQ Q+GVF+ +S+K K K G R+ +EVGLGFKTPK A G YVDKKCPFTG++SIRGRILKG+VLSTKM RTII+RRDYLH+V KY RFEKRHKN+AAH SPAF +VKEGD+VT+GQCRPL+KTVRFNVL+ EP S + ++++KQFR F Sbjct: 4 VDQTEKAYQKQQGVFL----ASKKFAGK--KKGPRFYKEVGLGFKTPKSAIEGQYVDKKCPFTGNISIRGRILKGVVLSTKMKRTIIVRRDYLHFVKKYKRFEKRHKNVAAHLSPAF-RVKEGDVVTIGQCRPLAKTVRFNVLEVEPASETKPINVRKQFRQF 159
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|1214704889|gb|OWZ16673.1| (Archaeal ribosomal protein S17P [Phytophthora megakarya]) HSP 1 Score: 219.55 bits (558), Expect = 1.629e-70 Identity = 111/163 (68.10%), Postives = 133/163 (81.60%), Query Frame = 0 Query: 15 ADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEP-SINQALSIKKQFRVF 176 DQ EKAYQ Q+GVF+ +S+K K K G R+ +EVGLGFKTPK A G YVDKKCPFTG++SIRGRILKG+VLSTKM RTII+RRDYLH+V KY RFEKRHKN+AAH SPAF +VKEGD+VT+GQCRPL+KTVRFNVL+ EP S + ++++KQFR F Sbjct: 4 VDQTEKAYQKQQGVFL----ASKKFAGK--KKGPRFYKEVGLGFKTPKSAIDGQYVDKKCPFTGNISIRGRILKGVVLSTKMKRTIIVRRDYLHFVKKYKRFEKRHKNVAAHLSPAF-RVKEGDVVTIGQCRPLAKTVRFNVLEVEPASETKPINVRKQFRQF 159
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|470529918|ref|XP_004368153.1| (ribosomal protein S17, putative [Acanthamoeba castellanii str. Neff] >gi|440804521|gb|ELR25398.1| ribosomal protein S17, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 218.009 bits (554), Expect = 5.931e-70 Identity = 106/164 (64.63%), Postives = 130/164 (79.27%), Query Frame = 0 Query: 14 EADQHEKAYQVQKGVFMFGKSSSRKEGSKRSK-HGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176 EA Q E+A+Q Q V++ +R G+K K G R+T+ +GLGFKTPKEA G Y+DKKCPFTG+VSIRGRIL+G+V+STKM RTII+RRDYLH+V KY+RFEKRHKN+ AHCSPAF +KEGD+VTVGQCRPLSKT+RFNV+ H+P Q L KK FR+F Sbjct: 2 EAAQTERAFQKQPTVYV---GKARVLGTKAGKGKGVRFTKNIGLGFKTPKEAIEGKYIDKKCPFTGNVSIRGRILRGVVVSTKMKRTIIVRRDYLHYVPKYNRFEKRHKNIPAHCSPAF-TLKEGDVVTVGQCRPLSKTIRFNVIAHQPQNIQGLQKKKTFRIF 161
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|1214697622|gb|OWZ10846.1| (Archaeal ribosomal protein S17P, partial [Phytophthora megakarya]) HSP 1 Score: 217.238 bits (552), Expect = 1.118e-69 Identity = 110/161 (68.32%), Postives = 132/161 (81.99%), Query Frame = 0 Query: 17 QHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEP-SINQALSIKKQFRVF 176 Q EKAYQ Q+GVF+ +S+K K K G R+ +EVGLGFKTPK A G YVDKKCPFTG++SIRGRILKG+VLSTKM RTII+RRDYLH+V KY RFEKRHKN+AAH SPAF +VKEGD+VT+GQCRPL+KTVRFNVL+ EP S + ++++KQFR F Sbjct: 1 QTEKAYQKQQGVFL----ASKKFAGK--KKGPRFYKEVGLGFKTPKSAIEGQYVDKKCPFTGNISIRGRILKGVVLSTKMKRTIIVRRDYLHFVKKYKRFEKRHKNVAAHLSPAF-RVKEGDVVTIGQCRPLAKTVRFNVLEVEPASETKPINVRKQFRQF 154
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|678323265|emb|CDW82785.1| (40s ribosomal protein [Stylonychia lemnae]) HSP 1 Score: 214.157 bits (544), Expect = 1.785e-68 Identity = 103/160 (64.38%), Postives = 127/160 (79.38%), Query Frame = 0 Query: 17 QHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176 Q E+A+Q Q VF+ +S+K +K++ G R+ +++GLGFKTP EA G YVDKKCPFT SVSIRGRI KG+VLSTKM RTIIIRRDYLH+V KY+RFEKRH N A HCSPAFP+V+EGD+VTVGQCRPLSKTVRFNVL+ E + +++KQF +F Sbjct: 5 QTERAFQKQSAVFL----NSKKLLAKKTTAGVRYYKKIGLGFKTPAEAIEGQYVDKKCPFTSSVSIRGRIFKGVVLSTKMKRTIIIRRDYLHYVKKYNRFEKRHNNFAVHCSPAFPRVREGDVVTVGQCRPLSKTVRFNVLRVEAKRIEG-NVRKQFVLF 159
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|1072224627|gb|OEU09376.1| (40S ribosomal protein S11 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 214.157 bits (544), Expect = 2.563e-68 Identity = 109/165 (66.06%), Postives = 126/165 (76.36%), Query Frame = 0 Query: 12 YREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176 Y E DQ EKAYQ Q VF+ + R GS R K R+ + VGLG KTP A G +VDKKCPFTG+VSIRGRIL G V+STKM RT+I+RRDYLH++SKY RFEKRHKN+AAHCSPAF VK+GDIVT+GQCRPLSKTVRFNV+ HEP +A + KK FRVF Sbjct: 8 YSECDQTEKAYQKQAAVFI---ARKRAVGSARQK-PMRFVKNVGLGIKTPDAAIEGNFVDKKCPFTGNVSIRGRILNGQVISTKMKRTVIVRRDYLHYISKYRRFEKRHKNIAAHCSPAFA-VKDGDIVTIGQCRPLSKTVRFNVVAHEP--QRAKTGKKTFRVF 165 The following BLAST results are available for this feature:
BLAST of EWM21461.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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