EWM21461.1, cds9213 (CDS) Nannochloropsis gaditana

Overview
NameEWM21461.1
Unique Namecds9213
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:185219..185356 -
Alignment locationKK037252.1:184654..185046 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21461.1
Product40s ribosomal protein
Orig transcript idgnl|cribi|Naga_100019g28.483.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:185219..185356 -
KK037252.1supercontigKK037252.1:184654..185046 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR019979Ribosomal_S17_CS
IPR012340NA-bd_OB-fold
IPR000266Ribosomal_S17
Homology
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|553181774|ref|XP_005853622.1| (small subunit ribosomal protein S11e [Nannochloropsis gaditana CCMP526] >gi|422295434|gb|EKU22733.1| small subunit ribosomal protein S11e [Nannochloropsis gaditana CCMP526] >gi|585101691|gb|EWM21461.1| 40s ribosomal protein [Nannochloropsis gaditana])

HSP 1 Score: 364.385 bits (934), Expect = 1.517e-127
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:    1 MVAEKVSKRGGYREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176
            MVAEKVSKRGGYREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF
Sbjct:    1 MVAEKVSKRGGYREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176          
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|676381241|ref|XP_009033899.1| (hypothetical protein AURANDRAFT_21483 [Aureococcus anophagefferens] >gi|676397911|ref|XP_009042233.1| hypothetical protein AURANDRAFT_34507 [Aureococcus anophagefferens] >gi|323447119|gb|EGB03069.1| hypothetical protein AURANDRAFT_34507 [Aureococcus anophagefferens] >gi|323455673|gb|EGB11541.1| hypothetical protein AURANDRAFT_21483 [Aureococcus anophagefferens])

HSP 1 Score: 244.973 bits (624), Expect = 1.996e-80
Identity = 114/167 (68.26%), Postives = 137/167 (82.04%), Query Frame = 0
Query:   10 GGYREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176
            G +REA+Q EKAYQ Q  VF+      ++  +K+SK G R+ R VGLGFKTPK A  G+YVDKKCPFTG+VSIRGRILKG+V+STKM RT++IRRDYL+W  KY RFEKRHKN++ HCSP F  VKEGDIVTVGQCRPL+KTVRFNVL HEP++NQ+L++KK FRVF
Sbjct:    5 GTFREAEQTEKAYQKQDAVFI----GRKRALAKKSKKGMRYVRNVGLGFKTPKLALEGSYVDKKCPFTGNVSIRGRILKGMVISTKMKRTLVIRRDYLNWCGKYRRFEKRHKNMSVHCSPCFENVKEGDIVTVGQCRPLTKTVRFNVLTHEPAVNQSLNVKKVFRVF 167          
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|298708385|emb|CBJ48448.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 234.572 bits (597), Expect = 4.261e-76
Identity = 115/167 (68.86%), Postives = 135/167 (80.84%), Query Frame = 0
Query:   12 YREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKH-GARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLST-KMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176
            YREA+QHEKAYQ Q  +F+  K   R  G K +K  G R+ + VGLGFKTPK A+ GTYVDKKCPFTG VSIRGRILKG+V+S  KM  TI+IRRDYLH+VSKY RFEKRHKN+  HC+P +  VKEGDIVT+GQCRPLSKTVRFNVL+HEP IN A+S++KQFR+F
Sbjct:   28 YREAEQHEKAYQKQDAIFVGAK---RVLGKKVAKSKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVSVRKQFRMF 191          
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|1210515325|dbj|GAX25777.1| (small subunit ribosomal protein S11e [Fistulifera solaris] >gi|1210525779|dbj|GAX15385.1| small subunit ribosomal protein S11e [Fistulifera solaris])

HSP 1 Score: 220.32 bits (560), Expect = 9.331e-71
Identity = 112/165 (67.88%), Postives = 127/165 (76.97%), Query Frame = 0
Query:   12 YREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176
            Y E DQHEKAYQ Q  VF+   +  R  G   +K   RW + VGLG KTP  A  G YVDKKCPFTG+VSIRGRILKG+V+STKM RTI++RRDYLH++ KY RFEKRHKN+A HCSPAFP VKEGDIVTVGQCRPLSKTVRFNVL HEP   + ++ KK FRVF
Sbjct:    8 YVECDQHEKAYQKQDAVFV---ARKRAIGGADNK-PMRWFKSVGLGIKTPAAAIEGNYVDKKCPFTGNVSIRGRILKGLVISTKMKRTIVVRRDYLHFIRKYRRFEKRHKNIAVHCSPAFP-VKEGDIVTVGQCRPLSKTVRFNVLAHEP--QRVIAGKKSFRVF 165          
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|301105230|ref|XP_002901699.1| (40S ribosomal protein S11 [Phytophthora infestans T30-4] >gi|675209237|ref|XP_008913503.1| archaeal ribosomal protein S17P [Phytophthora parasitica INRA-310] >gi|695380020|ref|XP_009516691.1| hypothetical protein PHYSODRAFT_353636 [Phytophthora sojae] >gi|695380064|ref|XP_009516703.1| hypothetical protein PHYSODRAFT_353660 [Phytophthora sojae] >gi|262100703|gb|EEY58755.1| 40S ribosomal protein S11 [Phytophthora infestans T30-4] >gi|348689602|gb|EGZ29416.1| hypothetical protein PHYSODRAFT_353636 [Phytophthora sojae] >gi|348689614|gb|EGZ29428.1| hypothetical protein PHYSODRAFT_353660 [Phytophthora sojae] >gi|566011901|gb|ETI34812.1| archaeal ribosomal protein S17P [Phytophthora parasitica P1569] >gi|566011920|gb|ETI34831.1| archaeal ribosomal protein S17P [Phytophthora parasitica P1569] >gi|568086284|gb|ETN01176.1| archaeal ribosomal protein S17P [Phytophthora parasitica INRA-310] >gi|570315624|gb|ETO63572.1| archaeal ribosomal protein S17P [Phytophthora parasitica P1976] >gi|570315625|gb|ETO63573.1| archaeal ribosomal protein S17P [Phytophthora parasitica P1976] >gi|570939413|gb|ETP04670.1| archaeal ribosomal protein S17P [Phytophthora parasitica CJ01A1] >gi|570969699|gb|ETP32818.1| archaeal ribosomal protein S17P [Phytophthora parasitica P10297] >gi|953501688|emb|CEG37137.1| archaeal ribosomal protein s17p [Plasmopara halstedii])

HSP 1 Score: 219.55 bits (558), Expect = 1.323e-70
Identity = 111/163 (68.10%), Postives = 133/163 (81.60%), Query Frame = 0
Query:   15 ADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEP-SINQALSIKKQFRVF 176
             DQ EKAYQ Q+GVF+    +S+K   K  K G R+ +EVGLGFKTPK A  G YVDKKCPFTG++SIRGRILKG+VLSTKM RTII+RRDYLH+V KY RFEKRHKN+AAH SPAF +VKEGD+VT+GQCRPL+KTVRFNVL+ EP S  + ++++KQFR F
Sbjct:    4 VDQTEKAYQKQQGVFL----ASKKFAGK--KKGPRFYKEVGLGFKTPKSAIEGQYVDKKCPFTGNISIRGRILKGVVLSTKMKRTIIVRRDYLHFVKKYKRFEKRHKNVAAHLSPAF-RVKEGDVVTIGQCRPLAKTVRFNVLEVEPASETKPINVRKQFRQF 159          
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|1214704889|gb|OWZ16673.1| (Archaeal ribosomal protein S17P [Phytophthora megakarya])

HSP 1 Score: 219.55 bits (558), Expect = 1.629e-70
Identity = 111/163 (68.10%), Postives = 133/163 (81.60%), Query Frame = 0
Query:   15 ADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEP-SINQALSIKKQFRVF 176
             DQ EKAYQ Q+GVF+    +S+K   K  K G R+ +EVGLGFKTPK A  G YVDKKCPFTG++SIRGRILKG+VLSTKM RTII+RRDYLH+V KY RFEKRHKN+AAH SPAF +VKEGD+VT+GQCRPL+KTVRFNVL+ EP S  + ++++KQFR F
Sbjct:    4 VDQTEKAYQKQQGVFL----ASKKFAGK--KKGPRFYKEVGLGFKTPKSAIDGQYVDKKCPFTGNISIRGRILKGVVLSTKMKRTIIVRRDYLHFVKKYKRFEKRHKNVAAHLSPAF-RVKEGDVVTIGQCRPLAKTVRFNVLEVEPASETKPINVRKQFRQF 159          
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|470529918|ref|XP_004368153.1| (ribosomal protein S17, putative [Acanthamoeba castellanii str. Neff] >gi|440804521|gb|ELR25398.1| ribosomal protein S17, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 218.009 bits (554), Expect = 5.931e-70
Identity = 106/164 (64.63%), Postives = 130/164 (79.27%), Query Frame = 0
Query:   14 EADQHEKAYQVQKGVFMFGKSSSRKEGSKRSK-HGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176
            EA Q E+A+Q Q  V++     +R  G+K  K  G R+T+ +GLGFKTPKEA  G Y+DKKCPFTG+VSIRGRIL+G+V+STKM RTII+RRDYLH+V KY+RFEKRHKN+ AHCSPAF  +KEGD+VTVGQCRPLSKT+RFNV+ H+P   Q L  KK FR+F
Sbjct:    2 EAAQTERAFQKQPTVYV---GKARVLGTKAGKGKGVRFTKNIGLGFKTPKEAIEGKYIDKKCPFTGNVSIRGRILRGVVVSTKMKRTIIVRRDYLHYVPKYNRFEKRHKNIPAHCSPAF-TLKEGDVVTVGQCRPLSKTIRFNVIAHQPQNIQGLQKKKTFRIF 161          
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|1214697622|gb|OWZ10846.1| (Archaeal ribosomal protein S17P, partial [Phytophthora megakarya])

HSP 1 Score: 217.238 bits (552), Expect = 1.118e-69
Identity = 110/161 (68.32%), Postives = 132/161 (81.99%), Query Frame = 0
Query:   17 QHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEP-SINQALSIKKQFRVF 176
            Q EKAYQ Q+GVF+    +S+K   K  K G R+ +EVGLGFKTPK A  G YVDKKCPFTG++SIRGRILKG+VLSTKM RTII+RRDYLH+V KY RFEKRHKN+AAH SPAF +VKEGD+VT+GQCRPL+KTVRFNVL+ EP S  + ++++KQFR F
Sbjct:    1 QTEKAYQKQQGVFL----ASKKFAGK--KKGPRFYKEVGLGFKTPKSAIEGQYVDKKCPFTGNISIRGRILKGVVLSTKMKRTIIVRRDYLHFVKKYKRFEKRHKNVAAHLSPAF-RVKEGDVVTIGQCRPLAKTVRFNVLEVEPASETKPINVRKQFRQF 154          
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|678323265|emb|CDW82785.1| (40s ribosomal protein [Stylonychia lemnae])

HSP 1 Score: 214.157 bits (544), Expect = 1.785e-68
Identity = 103/160 (64.38%), Postives = 127/160 (79.38%), Query Frame = 0
Query:   17 QHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176
            Q E+A+Q Q  VF+    +S+K  +K++  G R+ +++GLGFKTP EA  G YVDKKCPFT SVSIRGRI KG+VLSTKM RTIIIRRDYLH+V KY+RFEKRH N A HCSPAFP+V+EGD+VTVGQCRPLSKTVRFNVL+ E    +  +++KQF +F
Sbjct:    5 QTERAFQKQSAVFL----NSKKLLAKKTTAGVRYYKKIGLGFKTPAEAIEGQYVDKKCPFTSSVSIRGRIFKGVVLSTKMKRTIIIRRDYLHYVKKYNRFEKRHNNFAVHCSPAFPRVREGDVVTVGQCRPLSKTVRFNVLRVEAKRIEG-NVRKQFVLF 159          
BLAST of EWM21461.1 vs. NCBI_GenBank
Match: gi|1072224627|gb|OEU09376.1| (40S ribosomal protein S11 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 214.157 bits (544), Expect = 2.563e-68
Identity = 109/165 (66.06%), Postives = 126/165 (76.36%), Query Frame = 0
Query:   12 YREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTIIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176
            Y E DQ EKAYQ Q  VF+   +  R  GS R K   R+ + VGLG KTP  A  G +VDKKCPFTG+VSIRGRIL G V+STKM RT+I+RRDYLH++SKY RFEKRHKN+AAHCSPAF  VK+GDIVT+GQCRPLSKTVRFNV+ HEP   +A + KK FRVF
Sbjct:    8 YSECDQTEKAYQKQAAVFI---ARKRAVGSARQK-PMRFVKNVGLGIKTPDAAIEGNFVDKKCPFTGNVSIRGRILNGQVISTKMKRTVIVRRDYLHYISKYRRFEKRHKNIAAHCSPAFA-VKDGDIVTIGQCRPLSKTVRFNVVAHEP--QRAKTGKKTFRVF 165          
The following BLAST results are available for this feature:
BLAST of EWM21461.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553181774|ref|XP_005853622.1|1.517e-127100.00small subunit ribosomal protein S11e [Nannochlorop... [more]
gi|676381241|ref|XP_009033899.1|1.996e-8068.26hypothetical protein AURANDRAFT_21483 [Aureococcus... [more]
gi|298708385|emb|CBJ48448.1|4.261e-7668.86conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210515325|dbj|GAX25777.1|9.331e-7167.88small subunit ribosomal protein S11e [Fistulifera ... [more]
gi|301105230|ref|XP_002901699.1|1.323e-7068.1040S ribosomal protein S11 [Phytophthora infestans ... [more]
gi|1214704889|gb|OWZ16673.1|1.629e-7068.10Archaeal ribosomal protein S17P [Phytophthora mega... [more]
gi|470529918|ref|XP_004368153.1|5.931e-7064.63ribosomal protein S17, putative [Acanthamoeba cast... [more]
gi|1214697622|gb|OWZ10846.1|1.118e-6968.32Archaeal ribosomal protein S17P, partial [Phytopht... [more]
gi|678323265|emb|CDW82785.1|1.785e-6864.3840s ribosomal protein [Stylonychia lemnae][more]
gi|1072224627|gb|OEU09376.1|2.563e-6866.0640S ribosomal protein S11 [Fragilariopsis cylindru... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9243rna9243Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications