rna9243, rna9243 (mRNA) Nannochloropsis gaditana

Overview
Namerna9243
Unique Namerna9243
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length762
Alignment locationKK037252.1:184444..185706 -

Link to JBrowse

Properties
Property NameValue
Product40s ribosomal protein
Orig transcript idgnl|cribi|Naga_100019g28.483.mrna
Orig protein idgnl|cribi|Naga_100019g28.483
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:184444..185706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g28gene8965Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9243rna9243-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21461.1cds9213Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9243 ID=rna9243|Name=rna9243|organism=Nannochloropsis gaditana|type=mRNA|length=762bp
ATGGAGGAGGGAAACTCTTTGGCCTCGGGTGTCGGGGCCAAGGTAAGCGC
GGCCGTGGCCCCTCCATTGGGCGCTGGACGGACCCAGCCTGCGGGCTTGT
TGGAGGCCCCCCGTCTGCTCGCGAATGGCATCGAGGTCTCCCTTCACGCG
TGCACACGCTCCATGGTCCGCGAGGTCCGTCACATTTTCCCACACCTGTC
GGCGGCTAGCGTCGGGGGCGGGGCGTTGCAGGGGGCTGGGTCTCTAGGGG
CGGAGGGCAGACTTCAGCGGGCGCAGGACGCCGCGGCGCCGATTCCGGAC
TCTGAGCAAAGCGCTGCGGGGTGCGAGGAGGGACGAGGGGGGGGGGGGAG
AAGACGGGCCCCTGCTCATAATGCCCACCATGCAGAAATCTCGGCTGGAC
ACTGTCCGCTTCGGACCGGAGGTAGAGGAGGAGAAGGACCGGTGCCTGGA
GCGCTTCGTGGCCTTCGCGCGGCCCCTCTGCCAGGGCCTGCGAGGCCAAG
GCTTCTGGGCCGACTTCATCGATCCCTGCTCGGGCCTGCCCATGCTAACC
CCGCACTGCACGCGCCCCTACAGCGAAGTCGCCGGCTTCGAGCACCTGCT
GCGCTACAAGACACAAAACGCAGGCTGCTGCAAGATCCTCCTCCACCCCC
GCTGGGGTTCGTCGTGCTACCCGGCCACCATTTTCACGACCGCGCCGGTG
AAGACGGTGCGGGCGGCGATTCAAATGCTGGAGCGCGAAGTAGAGAGGAT
GGGGGAGAGTAG
back to top

protein sequence of rna9243

>rna9243-protein ID=rna9243-protein|Name=rna9243|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MVAEKVSKRGGYREADQHEKAYQVQKGVFMFGKSSSRKEGSKRSKHGARW
TREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLSTKMNRTI
IIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSK
TVRFNVLQHEPSINQALSIKKQFRVF
back to top

mRNA from alignment at KK037252.1:184444..185706-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9243 ID=rna9243|Name=rna9243|organism=Nannochloropsis gaditana|type=mRNA|length=1263bp|location=Sequence derived from alignment at KK037252.1:184444..185706- (Nannochloropsis gaditana)
CGTGCCTCTGTGGCCTCATGGACGCGTCATTCTCCCTTAGCATGCTCTGT
AATATGTTTCTTTCGAATTCTGTGTGACTCTATCTTTCGTTGACACACGA
ATGGCGATGAAGATGCTCTCCTTGTGGGGCGCTACCGCTTTCGACGAGAC
GAGCGGTACCGTCATGCCCGTCTTGTTCAGTAATCCAGAAATTATACTTT
CGAGGAAATTCCAGCGGCATGATTGGAGTGGTATAGAAGTCTAAAAGAGG
TGCACGACAGCCTAACCCCCCACGCCGGAGTGCGTTGATACCCATTGCTC
TGTTTTCTCCATCTCATCTCCTCCCCTTCCTCCTCCATCAGGCATCCACT
ATGGTTGCGGAGAAAGTTTCCAAGCGCGGTGGTTACCGTGAAGCCGATCA
ACATGAAAAGGCTTATCAAGTGCAGAAAGGTGTATTTATGTTTGGAAAGT
CCTCATCCCGCAAGGAGGGGTCCAAGCGCTCAAAGCATGTACGTGTGGAG
ATAGTAGGCTGGGAAGGATGCAGTTTTGGGGAGGGGCGTTTTCAATATAC
TCCAGTCATACATGAGACAACTATGAAGTATCTGTCGGAGACGACATGTG
TTTATCACGATTTTCAGACGTCTTAACGAGCACACTGTCGCATCCTCCCA
TGCTCCTCAGGGTGCGCGATGGACCAGGGAGGTGGGCCTGGGCTTCAAGA
CCCCGAAGGAGGCGAAGGCCGGGACCTACGTCGACAAGAAGTGCCCCTTT
ACGGGATCCGTCTCCATTCGTGGCCGTATTCTCAAGGGCATCGTCCTTTC
CACGAAAATGAACCGCACCATCATCATCCGACGGGACTACTTGCACTGGG
TCTCCAAGTACAGCCGTTTCGAGAAGCGCCACAAGAACTTGGCAGCGCAC
TGTTCGCCCGCCTTCCCGCAGGTGAAGGAGGGCGACATTGTGACGGTCGG
CCAGTGCCGCCCTCTGAGCAAGACAGTCCGTTTCAATGTACTTCAGCATG
AACCCTCCATCAATCAGGCGTTAAGCATCAAGAAGCAGTTCCGCGTCTTT
TGAGCAGGCCAGAGCTACGGGCGATGGAGGCGTGTCCATGCTCTGCATTG
AGAGTGGGAATGGGTTACCGACACCGGAAGGAGGAGGGGAAATTCAGGGT
GAAAGTTGTTCAATAATGCGCCACCTCGATCATGCAAGGGCTCCTGAGCG
CGTCGGGCAGCACTGTGGTAGCTGAAAGAAGAAAAAGAATGCCCCACGGG
TTCTGTCTCCCTG
back to top

Coding sequence (CDS) from alignment at KK037252.1:184444..185706-

>rna9243 ID=rna9243|Name=rna9243|organism=Nannochloropsis gaditana|type=CDS|length=1062bp|location=Sequence derived from alignment at KK037252.1:184444..185706- (Nannochloropsis gaditana)
GGTGCGCGATGGACCAGGGAGGTGGGCCTGGGCTTCAAGACCCCGAAGGA
GGCGAAGGCCGGGACCTACGTCGACAAGAAGTGCCCCTTTACGGGATCCG
TCTCCATTCGTGGCCGTATTCTCAAGGGCATCGTCCTTTCCACGAAAATG
AACCGCACCATCATCATCCGACGGGACTACTTGCACTGGGTCTCCAAGTA
CAGCCGTTTCGAGAAGCGCCACAAGAACTTGGCAGCGCACTGTTCGCCCG
CCTTCCCGCAGGTGAAGGAGGGCGACATTGTGACGGTCGGCCAGTGCCGC
CCTCTGAGCAAGACAGTCCGTTTCAATGTACTTCAGCATGAACCCTCCAT
CAATCAGGCGTTAAGCATCAAGAAGCAGTTCCGCGTCTTTTGAATGGTTG
CGGAGAAAGTTTCCAAGCGCGGTGGTTACCGTGAAGCCGATCAACATGAA
AAGGCTTATCAAGTGCAGAAAGGTGTATTTATGTTTGGAAAGTCCTCATC
CCGCAAGGAGGGGTCCAAGCGCTCAAAGCATGGTGCGCGATGGACCAGGG
AGGTGGGCCTGGGCTTCAAGACCCCGAAGGAGGCGAAGGCCGGGACCTAC
GTCGACAAGAAGTGCCCCTTTACGGGATCCGTCTCCATTCGTGGCCGTAT
TCTCAAGGGCATCGTCCTTTCCACGAAAATGAACCGCACCATCATCATCC
GACGGGACTACTTGCACTGGGTCTCCAAGTACAGCCGTTTCGAGAAGCGC
CACAAGAACTTGGCAGCGCACTGTTCGCCCGCCTTCCCGCAGGTGAAGGA
GGGCGACATTGTGACGGTCGGCCAGTGCCGCCCTCTGAGCAAGACAGTCC
GTTTCAATGTACTTCAGCATGAACCCTCCATCAATCAGGCGTTAAGCATC
AAGAAGCAGTTCCGCGTCTTTTGAATGGTTGCGGAGAAAGTTTCCAAGCG
CGGTGGTTACCGTGAAGCCGATCAACATGAAAAGGCTTATCAAGTGCAGA
AAGGTGTATTTATGTTTGGAAAGTCCTCATCCCGCAAGGAGGGGTCCAAG
CGCTCAAAGCAT
back to top
Synonyms
Publications