rna9238, rna9238 (mRNA) Nannochloropsis gaditana

Overview
Namerna9238
Unique Namerna9238
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length960
Alignment locationKK037252.1:179171..180893 +

Link to JBrowse

Properties
Property NameValue
Productras-related protein rab-2-a
Orig transcript idgnl|cribi|Naga_100019g34.476.mrna
Orig protein idgnl|cribi|Naga_100019g34.476
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:179171..180893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g34gene8960Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9238rna9238-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21454.1cds9208Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9238 ID=rna9238|Name=rna9238|organism=Nannochloropsis gaditana|type=mRNA|length=960bp
ATGACCGACCTTACCAAGACTCCGCTTAAGCCAGAGGAGGATGTGACTGG
TCCTTTTTTGCCTAACGACGCTGTCCTCATCCGAGAGCTAAATTTTTCCT
ACGGTGACCGTCCAGTTTTAAAGGGTATCAATATGCGGCTTAAAAGAGGT
AGCCGATGCCTTCTTATCGGCGCGAACGGAGCGGGGAAAAGCACGCTACT
CCGTATCCTAGGAGGACGGCACTTGACTAAGCCTGACGACGCGGTGACCG
TGATGGGGATGCACGCTTTCCGAGACACCAAGCTGAACCTGATCCGGGCG
TACATGGACACGGACTGGGGAATGCGCACGGTCGCCTTCGCGGGCTACGG
GGTCCCGCTGCAGGCAGACATCCCCGTCACCGGCATGATGAGTAAGCTGC
AGAGCCAGCACCCAGAGAGACGGGACGAGCTCCTGGAGCTTCTGGGAATC
GACCCGGAGTGGCGCATGAACAGGGTCTCGGACGGACAGCGCCGACGCGT
GCAGCTCTTCTTAGGCCTGGTCCGCCCCTTCGAAATCCTTCTTCTTGATG
AAGTAACCGTGTCTCTGGATGTTGTGGTGCGCCAAGACTTGCTGCGCTGG
CTACGGCGGGAGACGGAGGTGAGGGGCGCCACGGTGATATACGCTACCCA
CATCTTCGACGGCCTCGACGACTGGCCTTCGCATCTGCACTTCATGACCA
ATCAGGGTCGTACCGGGTGGCAGGGGAAGCTGGAAGATCTCGATCACTAC
CGAGAGCTCCGCAGGGCCGGCGACCCTGGGCCTCTGCTGCGCATCGCCGA
GAGGTGGCTGCGGACAGAGACAGAGGAGCAGAAGCGGCGGAAGTTGCGGG
AGAAGGAGCTTGGGACTCAGGTGCTCGACGACAAGCTGTCCCAACCCACA
CTGTCAGGAGGAGGATTCGCAGCAGGGCGTATGTACGACCATTTCCATGA
GGGTGTCTGA
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protein sequence of rna9238

>rna9238-protein ID=rna9238-protein|Name=rna9238|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTV
QDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAER
WLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFT
ETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGG
RVAVGARGEGEGAEKAGSCAC
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mRNA from alignment at KK037252.1:179171..180893+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9238 ID=rna9238|Name=rna9238|organism=Nannochloropsis gaditana|type=mRNA|length=1723bp|location=Sequence derived from alignment at KK037252.1:179171..180893+ (Nannochloropsis gaditana)
TAATGGACAGCTTCACCAGCGCCGATAGTTATCTTATCAGGCAGCCGCTG
TGGTAGATGCACTCTAGAGCAAGAGGAGACTATAATGAAGTAATCATTGC
ATACGCATTAAGGGACATTTCACGACTGCATACCCCCGGGATCGCCTGAC
GCACCACTCGCCAGCTCGGCTGTTCGTTCCCTGCTACGGTAGCACACGTG
CTCCCCATGGCGGTTGCTGCCATGCGAAATGCGGGCTCACTTCATTTCAC
CGGCGCGACACCCTTCAAGAAAGGTACAGCGACGGCCCCCGGTCATTACA
GCACCAAGCGGCGAGTGTGAACAGGGCTAGCCACAGTCCTCGGGGTCGTC
GTCCTCACTTAGCACGCGTCTTGTCTACTAGCCGCCCGCGACTCCTCTAT
CCATTCCTTCAGCAGTGCACACCTTTTGCAGTCTCCTGCTTTCCCCAGAA
AGCATGTCACATGATTTGTTGATAAAGGTAAGGgccaaggaaagaaggcg
gggagcGCCACGCTCCCGACGAGAGAGGCTCCGAGGACACTGCCCGCGGA
CCTGCTGACAGGACGTCATTAGAACAACTCCCTAATTCCACGAGCTTTGC
ATGGTCATCACGTTGCGTGGCCCAGTCGGATCTGTCTCCAGTGCCTTGAC
TCGCACATTCCTCACGTGCCTGTATTACCCCACCTTCTAGTTGATAGTAA
TTGGCAATACCAGTGTGGGTAAAAGCTGCCTGCTTCTCCAGTTCACGGAC
AAACGCTTCTTGCCGCTGCACAACAGTACGATTGGCGTGGAGTTCGGGAG
CAAGCTGGTGACTGTGCAAGACCAGGTGCGGGTCAAGCTGCAGATATGGG
ACACGGCGGGGCAGGAGACCTTCAGGAGCATCACTCGAAGCTACTACCGC
GGGGCTATCGGCGCCTTGCTGGTCTACGACATCACACGACGGGAGAGGTG
AGCTAAGGTTGCTGGAATGTACCGATTCTCTTTTCAATCGTTGTCAaacc
cgccgcgtcctcctcttcgcttcctgTGTTTTCTGTAGCATCCGtgcctc
atcctcatccgcTGGCTACCACCCATACCCACCAAAATAATCCACtcgcc
ccatcccttccgccccATGCAGCTTTACGCACGCAGAGCGATGGCTGTCA
GAGCTGCGCGAGAACGCCAGTGGCTGCGGAGAGAAGATGGTGATCATGCT
CGTCGGCAACAAGTGCGACCGCGAGGGCCGGCGCGCCGTCtcccgagagg
agggggaggcgttCGCGCGCGagcacggcctcctcttcacggAGACCTCG
GCCAAGACCCGCGTGAACGTGGACGAAGCCTTCGTCAGGGTGGCTGAGGC
AGTGTACGAGAAGATCGAAACGGGGGTGATCGACCCCGCGGACGAGAGTG
TGGGTATCCGCTTCGTGCACAgggcggggcgcgggggagggcgggtggcg
gtgggggcgcgtggtgaaggggaaggggcggagaaggccgGAAGCTGCGC
CTGCTGAGCGCGGATGGGTTGGGgtttgatgaggagggaagaggtggcaC
GGGACCGGGCCTGTACAGGgtaagggagaggaaggaggcaggggctggGG
GGGTGAGGATGGTCAGCGGCTGGTCTGGGCCAGCCCGtgggagtgaggag
aggggcgacgcgaggaagggggaaaagctttGTACATGcagaaggaaaaa
tgaaagcaaCCACGCAGCGAAAC
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Coding sequence (CDS) from alignment at KK037252.1:179171..180893+

>rna9238 ID=rna9238|Name=rna9238|organism=Nannochloropsis gaditana|type=CDS|length=1998bp|location=Sequence derived from alignment at KK037252.1:179171..180893+ (Nannochloropsis gaditana)
ATGTCACATGATTTGTTGATAAAGTTGATAGTAATTGGCAATACCAGTGT
GGGTAAAAGCTGCCTGCTTCTCCAGTTCACGGACAAACGCTTCTTGCCGC
TGCACAACAGTACGATTGGCGTGGAGTTCGGGAGCAAGCTGGTGACTGTG
CAAGACCAGGTGCGGGTCAAGCTGCAGATATGGGACACGGCGGGGCAGGA
GACCTTCAGGAGCATCACTCGAAGCTACTACCGCGGGGCTATCGGCGCCT
TGCTGGTCTACGACATCACACGACGGGAGAGCTTTACGCACGCAGAGCGA
TGGCTGTCAGAGCTGCGCGAGAACGCCAGTGGCTGCGGAGAGAAGATGGT
GATCATGCTCGTCGGCAACAAGTGCGACCGCGAGGGCCGGCGCGCCGTCt
cccgagaggagggggaggcgttCGCGCGCGagcacggcctcctcttcacg
gAGACCTCGGCCAAGACCCGCGTGAACGTGGACGAAGCCTTCGTCAGGGT
GGCTGAGGCAGTGTACGAGAAGATCGAAACGGGGGTGATCGACCCCGCGG
ACGAGAGTGTGGGTATCCGCTTCGTGCACAgggcggggcgcgggggaggg
cgggtggcggtgggggcgcgtggtgaaggggaaggggcggagaaggccgG
AAGCTGCGCCTGCTGAATGTCACATGATTTGTTGATAAAGTTGATAGTAA
TTGGCAATACCAGTGTGGGTAAAAGCTGCCTGCTTCTCCAGTTCACGGAC
AAACGCTTCTTGCCGCTGCACAACAGTACGATTGGCGTGGAGTTCGGGAG
CAAGCTGGTGACTGTGCAAGACCAGGTGCGGGTCAAGCTGCAGATATGGG
ACACGGCGGGGCAGGAGACCTTCAGGAGCATCACTCGAAGCTACTACCGC
GGGGCTATCGGCGCCTTGCTGGTCTACGACATCACACGACGGGAGAGCTT
TACGCACGCAGAGCGATGGCTGTCAGAGCTGCGCGAGAACGCCAGTGGCT
GCGGAGAGAAGATGGTGATCATGCTCGTCGGCAACAAGTGCGACCGCGAG
GGCCGGCGCGCCGTCtcccgagaggagggggaggcgttCGCGCGCGagca
cggcctcctcttcacggAGACCTCGGCCAAGACCCGCGTGAACGTGGACG
AAGCCTTCGTCAGGGTGGCTGAGGCAGTGTACGAGAAGATCGAAACGGGG
GTGATCGACCCCGCGGACGAGAGTGTGGGTATCCGCTTCGTGCACAgggc
ggggcgcgggggagggcgggtggcggtgggggcgcgtggtgaaggggaag
gggcggagaaggccgGAAGCTGCGCCTGCTGAATGTCACATGATTTGTTG
ATAAAGTTGATAGTAATTGGCAATACCAGTGTGGGTAAAAGCTGCCTGCT
TCTCCAGTTCACGGACAAACGCTTCTTGCCGCTGCACAACAGTACGATTG
GCGTGGAGTTCGGGAGCAAGCTGGTGACTGTGCAAGACCAGGTGCGGGTC
AAGCTGCAGATATGGGACACGGCGGGGCAGGAGACCTTCAGGAGCATCAC
TCGAAGCTACTACCGCGGGGCTATCGGCGCCTTGCTGGTCTACGACATCA
CACGACGGGAGAGCTTTACGCACGCAGAGCGATGGCTGTCAGAGCTGCGC
GAGAACGCCAGTGGCTGCGGAGAGAAGATGGTGATCATGCTCGTCGGCAA
CAAGTGCGACCGCGAGGGCCGGCGCGCCGTCtcccgagaggagggggagg
cgttCGCGCGCGagcacggcctcctcttcacggAGACCTCGGCCAAGACC
CGCGTGAACGTGGACGAAGCCTTCGTCAGGGTGGCTGAGGCAGTGTACGA
GAAGATCGAAACGGGGGTGATCGACCCCGCGGACGAGAGTGTGGGTATCC
GCTTCGTGCACAgggcggggcgcgggggagggcgggtggcggtgggggcg
cgtggtgaaggggaaggggcggagaaggccgGAAGCTGCGCCTGCTGA
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Synonyms
Publications