EWM21454.1, cds9208 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|585101684|gb|EWM21454.1| (ras-related protein rab-2-a [Nannochloropsis gaditana]) HSP 1 Score: 448.358 bits (1152), Expect = 2.139e-159 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSCAC 221
MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSCAC
Sbjct: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSCAC 221
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1050560287|ref|XP_017644330.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium arboreum] >gi|728834837|gb|KHG14280.1| Ras-related RABB1c -like protein [Gossypium arboreum]) HSP 1 Score: 264.618 bits (675), Expect = 6.932e-87 Identity = 131/219 (59.82%), Postives = 163/219 (74.43%), Query Frame = 0
Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSC 219
MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++L+ + D +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H WL + R++A+ M +ML+GNKCD RRAVS EEGE FA+EHGL+F E SAKT NV+EAF+ A +Y+KI+ GVID ++ES GI+ H++G G +RG A +AGSC
Sbjct: 1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARLIGI-DNNPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHANA---NMTVMLIGNKCDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFISTAAKIYKKIQDGVIDISNESYGIKLGHQSGAG------LSRGRDGSASQAGSC 209
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1137224821|gb|OMO89586.1| (Small GTPase superfamily [Corchorus olitorius]) HSP 1 Score: 263.462 bits (672), Expect = 2.259e-86 Identity = 129/222 (58.11%), Postives = 164/222 (73.87%), Query Frame = 0
Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHR--AGRGGGRVAVGARGEGEGAEKAGSCA 220
MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T++++ +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H WL + R++A+ M +ML+GNKCD RRAVS EEGE FA+EHGL+F E SAKT NV+EAF+ A +Y+KI+ GVID A+ES GI+ H A GGR +G ++ G C+
Sbjct: 1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIENK-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---NMTVMLIGNKCDLSHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFISTASKIYKKIQDGVIDVANESYGIKLGHDAFAASSGGR-------DGTASQAGGCCS 211
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1029139634|ref|XP_016747804.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum]) HSP 1 Score: 263.462 bits (672), Expect = 2.284e-86 Identity = 132/221 (59.73%), Postives = 162/221 (73.30%), Query Frame = 0
Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRG--GGRVAVGARGEGEGAEKAGSC 219
MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++L+ + D +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H WL + R++A+ M +ML+GNKCD RRAVS EEGE FA+EHGL+F E SAKT NV+EAF+ A +Y+KI+ GVID ++ES GI+ H+ G G GGR A +AGSC
Sbjct: 1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARLIGI-DNNPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHANA---NMTVMLIGNKCDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFISTAAKIYKKIQDGVIDISNESYGIKLGHQTGAGLSGGR--------DSSASQAGSC 209
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1091785114|ref|XP_018686727.1| (PREDICTED: ras-related protein RABB1c [Musa acuminata subsp. malaccensis]) HSP 1 Score: 263.462 bits (672), Expect = 2.576e-86 Identity = 131/220 (59.55%), Postives = 161/220 (73.18%), Query Frame = 0
Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSCA 220
MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T+ D +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H WL E R++A+ M IML+GNKCD RRAVS EEGE FA+EHGL+F E SAKT NV+EAF+ A +Y+KI+ GV D ++ES GI + G GG G R +G A+ G C+
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEEARQHAN---SNMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFISTAATIYKKIQDGVFDVSNESYGI----KVGYGGTAAPSGGR-DGSSAQAGGCCS 211
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|823266744|ref|XP_012466071.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium raimondii] >gi|763817166|gb|KJB84013.1| hypothetical protein B456_N000100 [Gossypium raimondii]) HSP 1 Score: 263.077 bits (671), Expect = 2.842e-86 Identity = 130/222 (58.56%), Postives = 165/222 (74.32%), Query Frame = 0
Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVH--RAGRGGGRVAVGARGEGEGAEKAGSCA 220
MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T++++ +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H WL E R++A+ M +ML+GNKCD RRAVS EEGE FAREHGL+F E SAKT NV+EAF+ A +Y+KI+ GVID ++ES GI+ H +A GGR +G ++ G C+
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIENK-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEEARQHANA---NMTVMLIGNKCDLSHRRAVSTEEGEQFAREHGLIFMEASAKTAQNVEEAFLSTASKIYKKIQDGVIDISNESYGIKIGHLSQASSFGGR-------DGSASQPGGCCS 211
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1029058562|ref|XP_016679337.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum] >gi|1029135513|ref|XP_016745871.1| PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum] >gi|1029135515|ref|XP_016745872.1| PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum] >gi|1050557554|ref|XP_017627348.1| PREDICTED: ras-related protein RABB1c-like [Gossypium arboreum] >gi|728837944|gb|KHG17387.1| Ras-related RABB1c -like protein [Gossypium arboreum]) HSP 1 Score: 263.077 bits (671), Expect = 2.873e-86 Identity = 130/222 (58.56%), Postives = 165/222 (74.32%), Query Frame = 0
Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVH--RAGRGGGRVAVGARGEGEGAEKAGSCA 220
MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T++++ +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H WL E R++A+ M +ML+GNKCD RRAVS EEGE FAREHGL+F E SAKT NV+EAF+ A +Y+KI+ GVID ++ES GI+ H +A GGR +G ++ G C+
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIENK-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEEARQHANA---NMTVMLIGNKCDLSHRRAVSTEEGEQFAREHGLIFMEASAKTAQNVEEAFLSTASKIYKKIQDGVIDISNESYGIKIGHVSQASSFGGR-------DGSASQPGGCCS 211
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|702352283|ref|XP_010058003.1| (PREDICTED: ras-related protein RABB1c [Eucalyptus grandis] >gi|629110316|gb|KCW75462.1| hypothetical protein EUGRSUZ_E04227 [Eucalyptus grandis]) HSP 1 Score: 263.077 bits (671), Expect = 3.276e-86 Identity = 131/219 (59.82%), Postives = 163/219 (74.43%), Query Frame = 0
Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSC 219
MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T+ D +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H WL + R++A+ M IML+GNKCD RRAVS EEGE FA+EHGL+F E SAKT NV+EAF++ A A+Y+KIE G +D ++ES GI + G GG + G R +G A+ G C
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAAIYKKIEDGALDVSNESYGI----KVGYGGVQGPPGGR-DGAPAQSGGCC 210
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1029068770|ref|XP_016694633.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum] >gi|1029139737|ref|XP_016747843.1| PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum]) HSP 1 Score: 262.692 bits (670), Expect = 4.752e-86 Identity = 132/221 (59.73%), Postives = 162/221 (73.30%), Query Frame = 0
Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRG--GGRVAVGARGEGEGAEKAGSC 219
MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++L+ + D +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H WL + R++A+ M +ML+GNKCD RRAVS EEGE FA+EHGL+F E SAKT NV+EAF+ A +Y+KI+ GVID ++ES GI+ H+ G G GGR A +AGSC
Sbjct: 1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARLIGI-DNNPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHANA---NMTVMLIGNKCDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFISTAAKIYKKIQDGVIDISNESYGIKLGHQTGAGLSGGRDG--------SASQAGSC 209
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|823126899|ref|XP_012491610.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium raimondii] >gi|763743288|gb|KJB10787.1| hypothetical protein B456_001G224400 [Gossypium raimondii]) HSP 1 Score: 262.307 bits (669), Expect = 5.244e-86 Identity = 132/221 (59.73%), Postives = 162/221 (73.30%), Query Frame = 0
Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRG--GGRVAVGARGEGEGAEKAGSC 219
MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++L+ + D +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H WL + R++A+ M +ML+GNKCD RRAVS EEGE FA+EHGL+F E SAKT NV+EAF+ A +Y+KI+ GVID ++ES GI+ H+ G G GGR A +AGSC
Sbjct: 1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARLIGI-DNNPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHANA---NMTVMLIGNKCDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFISTAAKIYKKIQDGVIDISNESCGIKLGHQTGAGLSGGRDG--------SASQAGSC 209 The following BLAST results are available for this feature:
BLAST of EWM21454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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