EWM21454.1, cds9208 (CDS) Nannochloropsis gaditana

Overview
NameEWM21454.1
Unique Namecds9208
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:179624..179647 +
Alignment locationKK037252.1:179861..180117 +
Alignment locationKK037252.1:180293..180677 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21454.1
Productras-related protein rab-2-a
Orig transcript idgnl|cribi|Naga_100019g34.476.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:179624..179647 +
KK037252.1supercontigKK037252.1:179861..180117 +
KK037252.1supercontigKK037252.1:180293..180677 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006913nucleocytoplasmic transport
GO:0006886intracellular protein transport
GO:0015031protein transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0005622intracellular
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom
IPR002041Ran_GTPase
IPR003579Small_GTPase_Rab_type
IPR003578Small_GTPase_Rho
IPR020849Small_GTPase_Ras
IPR001806Small_GTPase
Homology
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|585101684|gb|EWM21454.1| (ras-related protein rab-2-a [Nannochloropsis gaditana])

HSP 1 Score: 448.358 bits (1152), Expect = 2.139e-159
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSCAC 221
            MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSCAC
Sbjct:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSCAC 221          
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1050560287|ref|XP_017644330.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium arboreum] >gi|728834837|gb|KHG14280.1| Ras-related RABB1c -like protein [Gossypium arboreum])

HSP 1 Score: 264.618 bits (675), Expect = 6.932e-87
Identity = 131/219 (59.82%), Postives = 163/219 (74.43%), Query Frame = 0
Query:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSC 219
            MS+  L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++L+ + D   +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H   WL + R++A+     M +ML+GNKCD   RRAVS EEGE FA+EHGL+F E SAKT  NV+EAF+  A  +Y+KI+ GVID ++ES GI+  H++G G       +RG    A +AGSC
Sbjct:    1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARLIGI-DNNPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHANA---NMTVMLIGNKCDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFISTAAKIYKKIQDGVIDISNESYGIKLGHQSGAG------LSRGRDGSASQAGSC 209          
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1137224821|gb|OMO89586.1| (Small GTPase superfamily [Corchorus olitorius])

HSP 1 Score: 263.462 bits (672), Expect = 2.259e-86
Identity = 129/222 (58.11%), Postives = 164/222 (73.87%), Query Frame = 0
Query:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHR--AGRGGGRVAVGARGEGEGAEKAGSCA 220
            MS+  L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T++++  +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H   WL + R++A+     M +ML+GNKCD   RRAVS EEGE FA+EHGL+F E SAKT  NV+EAF+  A  +Y+KI+ GVID A+ES GI+  H   A   GGR       +G  ++  G C+
Sbjct:    1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIENK-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---NMTVMLIGNKCDLSHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFISTASKIYKKIQDGVIDVANESYGIKLGHDAFAASSGGR-------DGTASQAGGCCS 211          
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1029139634|ref|XP_016747804.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum])

HSP 1 Score: 263.462 bits (672), Expect = 2.284e-86
Identity = 132/221 (59.73%), Postives = 162/221 (73.30%), Query Frame = 0
Query:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRG--GGRVAVGARGEGEGAEKAGSC 219
            MS+  L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++L+ + D   +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H   WL + R++A+     M +ML+GNKCD   RRAVS EEGE FA+EHGL+F E SAKT  NV+EAF+  A  +Y+KI+ GVID ++ES GI+  H+ G G  GGR           A +AGSC
Sbjct:    1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARLIGI-DNNPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHANA---NMTVMLIGNKCDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFISTAAKIYKKIQDGVIDISNESYGIKLGHQTGAGLSGGR--------DSSASQAGSC 209          
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1091785114|ref|XP_018686727.1| (PREDICTED: ras-related protein RABB1c [Musa acuminata subsp. malaccensis])

HSP 1 Score: 263.462 bits (672), Expect = 2.576e-86
Identity = 131/220 (59.55%), Postives = 161/220 (73.18%), Query Frame = 0
Query:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSCA 220
            MS+  L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T+ D   +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H   WL E R++A+     M IML+GNKCD   RRAVS EEGE FA+EHGL+F E SAKT  NV+EAF+  A  +Y+KI+ GV D ++ES GI    + G GG     G R +G  A+  G C+
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEEARQHAN---SNMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFISTAATIYKKIQDGVFDVSNESYGI----KVGYGGTAAPSGGR-DGSSAQAGGCCS 211          
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|823266744|ref|XP_012466071.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium raimondii] >gi|763817166|gb|KJB84013.1| hypothetical protein B456_N000100 [Gossypium raimondii])

HSP 1 Score: 263.077 bits (671), Expect = 2.842e-86
Identity = 130/222 (58.56%), Postives = 165/222 (74.32%), Query Frame = 0
Query:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVH--RAGRGGGRVAVGARGEGEGAEKAGSCA 220
            MS+  L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T++++  +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H   WL E R++A+     M +ML+GNKCD   RRAVS EEGE FAREHGL+F E SAKT  NV+EAF+  A  +Y+KI+ GVID ++ES GI+  H  +A   GGR       +G  ++  G C+
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIENK-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEEARQHANA---NMTVMLIGNKCDLSHRRAVSTEEGEQFAREHGLIFMEASAKTAQNVEEAFLSTASKIYKKIQDGVIDISNESYGIKIGHLSQASSFGGR-------DGSASQPGGCCS 211          
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1029058562|ref|XP_016679337.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum] >gi|1029135513|ref|XP_016745871.1| PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum] >gi|1029135515|ref|XP_016745872.1| PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum] >gi|1050557554|ref|XP_017627348.1| PREDICTED: ras-related protein RABB1c-like [Gossypium arboreum] >gi|728837944|gb|KHG17387.1| Ras-related RABB1c -like protein [Gossypium arboreum])

HSP 1 Score: 263.077 bits (671), Expect = 2.873e-86
Identity = 130/222 (58.56%), Postives = 165/222 (74.32%), Query Frame = 0
Query:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVH--RAGRGGGRVAVGARGEGEGAEKAGSCA 220
            MS+  L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T++++  +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H   WL E R++A+     M +ML+GNKCD   RRAVS EEGE FAREHGL+F E SAKT  NV+EAF+  A  +Y+KI+ GVID ++ES GI+  H  +A   GGR       +G  ++  G C+
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIENK-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEEARQHANA---NMTVMLIGNKCDLSHRRAVSTEEGEQFAREHGLIFMEASAKTAQNVEEAFLSTASKIYKKIQDGVIDISNESYGIKIGHVSQASSFGGR-------DGSASQPGGCCS 211          
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|702352283|ref|XP_010058003.1| (PREDICTED: ras-related protein RABB1c [Eucalyptus grandis] >gi|629110316|gb|KCW75462.1| hypothetical protein EUGRSUZ_E04227 [Eucalyptus grandis])

HSP 1 Score: 263.077 bits (671), Expect = 3.276e-86
Identity = 131/219 (59.82%), Postives = 163/219 (74.43%), Query Frame = 0
Query:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRGGGRVAVGARGEGEGAEKAGSC 219
            MS+  L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T+ D   +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H   WL + R++A+     M IML+GNKCD   RRAVS EEGE FA+EHGL+F E SAKT  NV+EAF++ A A+Y+KIE G +D ++ES GI    + G GG +   G R +G  A+  G C
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAAIYKKIEDGALDVSNESYGI----KVGYGGVQGPPGGR-DGAPAQSGGCC 210          
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|1029068770|ref|XP_016694633.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum] >gi|1029139737|ref|XP_016747843.1| PREDICTED: ras-related protein RABB1c-like [Gossypium hirsutum])

HSP 1 Score: 262.692 bits (670), Expect = 4.752e-86
Identity = 132/221 (59.73%), Postives = 162/221 (73.30%), Query Frame = 0
Query:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRG--GGRVAVGARGEGEGAEKAGSC 219
            MS+  L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++L+ + D   +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H   WL + R++A+     M +ML+GNKCD   RRAVS EEGE FA+EHGL+F E SAKT  NV+EAF+  A  +Y+KI+ GVID ++ES GI+  H+ G G  GGR           A +AGSC
Sbjct:    1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARLIGI-DNNPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHANA---NMTVMLIGNKCDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFISTAAKIYKKIQDGVIDISNESYGIKLGHQTGAGLSGGRDG--------SASQAGSC 209          
BLAST of EWM21454.1 vs. NCBI_GenBank
Match: gi|823126899|ref|XP_012491610.1| (PREDICTED: ras-related protein RABB1c-like [Gossypium raimondii] >gi|763743288|gb|KJB10787.1| hypothetical protein B456_001G224400 [Gossypium raimondii])

HSP 1 Score: 262.307 bits (669), Expect = 5.244e-86
Identity = 132/221 (59.73%), Postives = 162/221 (73.30%), Query Frame = 0
Query:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHRAGRG--GGRVAVGARGEGEGAEKAGSC 219
            MS+  L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++L+ + D   +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRE+F H   WL + R++A+     M +ML+GNKCD   RRAVS EEGE FA+EHGL+F E SAKT  NV+EAF+  A  +Y+KI+ GVID ++ES GI+  H+ G G  GGR           A +AGSC
Sbjct:    1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARLIGI-DNNPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHANA---NMTVMLIGNKCDLAHRRAVSTEEGEQFAKEHGLVFMEASAKTAQNVEEAFISTAAKIYKKIQDGVIDISNESCGIKLGHQTGAGLSGGRDG--------SASQAGSC 209          
The following BLAST results are available for this feature:
BLAST of EWM21454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101684|gb|EWM21454.1|2.139e-159100.00ras-related protein rab-2-a [Nannochloropsis gadit... [more]
gi|1050560287|ref|XP_017644330.1|6.932e-8759.82PREDICTED: ras-related protein RABB1c-like [Gossyp... [more]
gi|1137224821|gb|OMO89586.1|2.259e-8658.11Small GTPase superfamily [Corchorus olitorius][more]
gi|1029139634|ref|XP_016747804.1|2.284e-8659.73PREDICTED: ras-related protein RABB1c-like [Gossyp... [more]
gi|1091785114|ref|XP_018686727.1|2.576e-8659.55PREDICTED: ras-related protein RABB1c [Musa acumin... [more]
gi|823266744|ref|XP_012466071.1|2.842e-8658.56PREDICTED: ras-related protein RABB1c-like [Gossyp... [more]
gi|1029058562|ref|XP_016679337.1|2.873e-8658.56PREDICTED: ras-related protein RABB1c-like [Gossyp... [more]
gi|702352283|ref|XP_010058003.1|3.276e-8659.82PREDICTED: ras-related protein RABB1c [Eucalyptus ... [more]
gi|1029068770|ref|XP_016694633.1|4.752e-8659.73PREDICTED: ras-related protein RABB1c-like [Gossyp... [more]
gi|823126899|ref|XP_012491610.1|5.244e-8659.73PREDICTED: ras-related protein RABB1c-like [Gossyp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9238rna9238Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications