rna9216, rna9216 (mRNA) Nannochloropsis gaditana

Overview
Namerna9216
Unique Namerna9216
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1431
Alignment locationKK037252.1:123554..124330 +

Link to JBrowse

Properties
Property NameValue
Productdhhc zinc finger domain containing protein
Orig transcript idgnl|cribi|Naga_100019g54.493.mrna
Orig protein idgnl|cribi|Naga_100019g54.493
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:123554..124330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g54gene8940Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9216rna9216-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21471.1cds9186Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9216 ID=rna9216|Name=rna9216|organism=Nannochloropsis gaditana|type=mRNA|length=1431bp
ATGGTTTCCGCCGAGTCTTTGCCTGCCTCGCGCAGGCTGTCTTTCAAAGC
CCGAAGTAGTGAGGCGGTCCCAAGGAGCCAATGCGACTCCTTTTTTGCCT
CGTCTCCCACTCAAAAGCGAATGATCGACCATGCGGATCCTTCAACGGAG
GAGCTGCCGCGGCGCCGGAGGTATAAGCCCTCATCGCCCCCTGCTTCTTC
CGTGGCAGAGAACGACCGAAATGTAGAAGCTTGCATGACCAAAGAATTGG
CTGGGCGTCAAGTCGATGTGACTTCAGGCAGGCGTTTCGGAGGGGAACAG
GAGACCAACGCCATGAATGCGCCGGATATTAGAAGGGTTGCAGTATCCTG
TGTCGAGCCCAATGCGGAGATGAAGCGGCAGCTGAGAGCGTTGGGACTGT
CGCTCGTGGACGACCTGCGGCAAGCAGACCTCCTTATTGCGGGAGATGGG
GCCACAGGAGTGGCAGCGCGGCGTACTGCCAAGGTGATGAGTGCCCTGTC
GCTGGGCCTTCCTCTGGTTGACTACTCCTGGTTGCGAAATTCAGCCAAAC
TAAGCGTTGCACAGGACCCTCGCGGCCACCCTCCGAGCTATAAGGGCCCA
AAAACGTGCGCTGACGAGATGACTGATGATAGGACCACGGTGCAGCCTTC
CGCCTCCGTGAAGGCCCCATTCTTGGAAGGCTGGGCTGTCCTGGCTGCCT
TTAAAAGCTTCGGGCTGAATGGCGTGCCTTCAAAGGGGGACCTGCGCCTC
ATCGTAGAGTGCGCCGGCGGCATTTTTTTCGACAAACCTAAGGACTTGGA
GTCAGGACGAAGAAAGAAGACCAGAAGAAGCAGTCTCTTGATTCTTTCGA
ATGAATGCAGCATGGCGCATAAAACGCTTGGAATCGAGGTCAGGCGGCTG
GCAGTAGAGCAGAAGGCGGCGGGTATGGGGGTGTACTACCTAGAAGCCCT
TTTGGCAGGCGCCATGAAGCAAAGACTTGATTTGTTTGACCATGTGCTCT
GGCAGTGGGACGAAAACGACGAGGAAGAGCAAACAGACGGAGACGAGAAA
ATTTCTTGCCGTTTACGTGGAAAGGAAAACAAAGCTGTGTCGGCGAGAGC
ATCGTCAAAGAAAAATGATCACAATTCGCTTAACGTTCCACGAGGGAAAT
TTGATGTCAAAAAAGGAGGGAAAAAGACAGACTCGACTATGGAATATCGT
GGACGGTCACGAATATCCCCGCACGTCTCGCTACTGACACCACAACAAAA
TGATCGGCTGCGCAGACTTGTGGAAGAACAGCTTGTTGAATGGAATTGTC
GGCCCCGAAAAAATGCTGTCGAAGGGGGAAACCGAACACTTTGGAAGAAA
CGCGCGATGAACTACACATATATCCGCATCTGCCGCAAGCGGTGTCATGA
CAGGCTACCCATGCAATCAAATAATAGCTAG
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protein sequence of rna9216

>rna9216-protein ID=rna9216-protein|Name=rna9216|organism=Nannochloropsis gaditana|type=polypeptide|length=258bp
MPVLDAEPIERACGVLRASKREERLIGTNGQCSGNPQYIGRMILLCGRKD
GIFPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLASF
MLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSI
SATLPVVDQSTSLAASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECE
VCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMTAINN
TFHKGERL
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mRNA from alignment at KK037252.1:123554..124330+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9216 ID=rna9216|Name=rna9216|organism=Nannochloropsis gaditana|type=mRNA|length=777bp|location=Sequence derived from alignment at KK037252.1:123554..124330+ (Nannochloropsis gaditana)
ATGCCTGTATTGGACGCAGAGCCCATCGAGCGAGCTTGCGGCGTGTTGCG
GGCAAGCaaacgggaggaaaggctcaTTGGCACGAACGGCCAATGCAGTG
GCAACCCGCAGTACATTGGGCGGATGATCTTGCTTTGCGGTCGCAAGGAT
GGAATATTTCCTTTTCAATGTTTGGTAGGACCGGACTGGCCATGCATGCT
CATCACATACACGATGGTATGCGTTCCAagcatttttttcttgaTTCTGG
TAGCCCCCCGCGTGAGCTCTGTCATCGTATGGGTGGGGCTCGCCTCCTTC
ATGCTCACGCTATTCTTCTTCAGCCTCACGGCATGTTCAGATCCCGGCAT
TGTCTTCTGGCAACTCCcaaatggaggggaggaaagaagtaTCGATCCTG
AAAGTGGGACAGTGGTGCTTCATAACAATGATTGTGGTAACGGTAGTATA
AGTGCGACATTACCAGTGGTCGATCAGTCCACGTCGCTGgcagcttcctc
ccaggGCTTCTCGAGTGCGCGCAACCCCGTTCCGCAGATTCCCTGCTCCC
GTTGCGAGCTCTCTAGGCCTATGGGCGCCTCACACTGCTATGAGTGCGAA
GTGTGCGTAAAAGATTTGGACCATCATTGCCCTTGGACAGGCAAATGTAT
CGGTCGGAAAAACTTGCAATTTTTCTACCTCTTTTTAACCTTCCTGACAG
TGCATATCATATTCCTCGGGTCGGTGACTGCTATGACAGCCATTAATAAT
ACATTTCACAAGGGCGAAAGATTATGA
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Coding sequence (CDS) from alignment at KK037252.1:123554..124330+

>rna9216 ID=rna9216|Name=rna9216|organism=Nannochloropsis gaditana|type=CDS|length=777bp|location=Sequence derived from alignment at KK037252.1:123554..124330+ (Nannochloropsis gaditana)
ATGCCTGTATTGGACGCAGAGCCCATCGAGCGAGCTTGCGGCGTGTTGCG
GGCAAGCaaacgggaggaaaggctcaTTGGCACGAACGGCCAATGCAGTG
GCAACCCGCAGTACATTGGGCGGATGATCTTGCTTTGCGGTCGCAAGGAT
GGAATATTTCCTTTTCAATGTTTGGTAGGACCGGACTGGCCATGCATGCT
CATCACATACACGATGGTATGCGTTCCAagcatttttttcttgaTTCTGG
TAGCCCCCCGCGTGAGCTCTGTCATCGTATGGGTGGGGCTCGCCTCCTTC
ATGCTCACGCTATTCTTCTTCAGCCTCACGGCATGTTCAGATCCCGGCAT
TGTCTTCTGGCAACTCCcaaatggaggggaggaaagaagtaTCGATCCTG
AAAGTGGGACAGTGGTGCTTCATAACAATGATTGTGGTAACGGTAGTATA
AGTGCGACATTACCAGTGGTCGATCAGTCCACGTCGCTGgcagcttcctc
ccaggGCTTCTCGAGTGCGCGCAACCCCGTTCCGCAGATTCCCTGCTCCC
GTTGCGAGCTCTCTAGGCCTATGGGCGCCTCACACTGCTATGAGTGCGAA
GTGTGCGTAAAAGATTTGGACCATCATTGCCCTTGGACAGGCAAATGTAT
CGGTCGGAAAAACTTGCAATTTTTCTACCTCTTTTTAACCTTCCTGACAG
TGCATATCATATTCCTCGGGTCGGTGACTGCTATGACAGCCATTAATAAT
ACATTTCACAAGGGCGAAAGATTATGA
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Synonyms
Publications