EWM21471.1, cds9186 (CDS) Nannochloropsis gaditana

Overview
NameEWM21471.1
Unique Namecds9186
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:123554..124330 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21471.1
Productdhhc zinc finger domain containing protein
Orig transcript idgnl|cribi|Naga_100019g54.493.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:123554..124330 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001594Znf_DHHC_palmitoyltrfase
Homology
BLAST of EWM21471.1 vs. NCBI_GenBank
Match: gi|553196113|ref|XP_005856272.1| (dhhc zinc finger domain containing protein [Nannochloropsis gaditana CCMP526] >gi|422292786|gb|EKU20088.1| dhhc zinc finger domain containing protein [Nannochloropsis gaditana CCMP526] >gi|585101701|gb|EWM21471.1| dhhc zinc finger domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query:    1 MPVLDAEPIERACGVLRASKREERLIGTNGQCSGNPQYIGRMILLCGRKDGIFPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLASFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMTAINNTFHKGERL 258
            MPVLDAEPIERACGVLRASKREERLIGTNGQCSGNPQYIGRMILLCGRKDGIFPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLASFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMTAINNTFHKGERL
Sbjct:    1 MPVLDAEPIERACGVLRASKREERLIGTNGQCSGNPQYIGRMILLCGRKDGIFPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLASFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMTAINNTFHKGERL 258          
BLAST of EWM21471.1 vs. NCBI_GenBank
Match: gi|675196115|ref|XP_008906942.1| (hypothetical protein PPTG_12999 [Phytophthora parasitica INRA-310] >gi|566021403|gb|ETI44314.1| hypothetical protein F443_10979 [Phytophthora parasitica P1569] >gi|568056457|gb|ETM53169.1| hypothetical protein L914_03340 [Phytophthora parasitica] >gi|568092856|gb|ETN07657.1| hypothetical protein PPTG_12999 [Phytophthora parasitica INRA-310] >gi|570325019|gb|ETO72967.1| hypothetical protein F444_11048 [Phytophthora parasitica P1976] >gi|570981894|gb|ETP42194.1| hypothetical protein F442_10873 [Phytophthora parasitica P10297])

HSP 1 Score: 138.272 bits (347), Expect = 8.409e-37
Identity = 84/247 (34.01%), Postives = 124/247 (50.20%), Query Frame = 0
Query:    5 DAEPIERACGVLRASKREERLIGTNGQCSGNPQYIGRMILLCG--RKDGIFPFQCLVGPDWPCMLITYTMVCVPSIFFL---ILVAPRVSSVIVWVGLASFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMT 246
            DAE   R    +  + +      TNG+C      +GR  +LC   R+ G FP  C VGP W CML+TY +   P+ FF    +L+  +V+ V+      S  LT   F++ ACSDPG+VF  L      +  D E+G                                           I C++CE+ RP+ ASHC +C VCV++LDHHCPWTGKC+G + +++FY+FLTF+++H + +G+V  +T
Sbjct:    4 DAELSARQGEEVEPTAKYTPSTRTNGRCCVR---VGRTHVLCSLSRRYGYFPSTCHVGPHWGCMLVTYCLAIGPAFFFFADDMLLGLKVALVV------SICLTTASFTMVACSDPGVVFQDLEVANALQG-DVETG-------------------------------------------IICAQCEVRRPLNASHCSDCGVCVRELDHHCPWTGKCVGERTIKWFYVFLTFISLHCMLIGAVCLVT 197          
BLAST of EWM21471.1 vs. NCBI_GenBank
Match: gi|567958736|gb|ETK84322.1| (hypothetical protein L915_10701 [Phytophthora parasitica] >gi|567987457|gb|ETL37761.1| hypothetical protein L916_10592 [Phytophthora parasitica] >gi|570948871|gb|ETP14128.1| hypothetical protein F441_10898 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 137.502 bits (345), Expect = 1.710e-36
Identity = 84/247 (34.01%), Postives = 124/247 (50.20%), Query Frame = 0
Query:    5 DAEPIERACGVLRASKREERLIGTNGQCSGNPQYIGRMILLCG--RKDGIFPFQCLVGPDWPCMLITYTMVCVPSIFFL---ILVAPRVSSVIVWVGLASFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMT 246
            DAE   R    +  + +      TNG+C      +GR  +LC   R+ G FP  C VGP W CML+TY +   P+ FF    +L+  +V+ V+      S  LT   F++ ACSDPG+VF  L      +  D E+G                                           I C++CE+ RP+ ASHC +C VCV++LDHHCPWTGKC+G + +++FY+FLTF+++H + +G+V  +T
Sbjct:    4 DAELSARQGEEVEPTAKYTPSTRTNGRCCVR---VGRTHVLCSLSRRYGYFPSTCHVGPHWGCMLVTYCLAIGPAFFFFADDMLLGLKVALVV------SICLTTASFTMVACSDPGVVFQDLEVANPLQG-DVETG-------------------------------------------IICAQCEVRRPLNASHCSDCGVCVRELDHHCPWTGKCVGERTIKWFYVFLTFISLHCMLIGAVCLVT 197          
BLAST of EWM21471.1 vs. NCBI_GenBank
Match: gi|568016727|gb|ETL90904.1| (hypothetical protein L917_10498 [Phytophthora parasitica])

HSP 1 Score: 134.806 bits (338), Expect = 1.531e-35
Identity = 76/213 (35.68%), Postives = 112/213 (52.58%), Query Frame = 0
Query:   39 IGRMILLCG--RKDGIFPFQCLVGPDWPCMLITYTMVCVPSIFFL---ILVAPRVSSVIVWVGLASFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMT 246
            +GR  +LC   R+ G FP  C VGP W CML+TY +   P+ FF    +L+  +V+ V+      S  LT   F++ ACSDPG+VF  L      +  D E+G                                           I C++CE+ RP+ ASHC +C VCV++LDHHCPWTGKC+G + +++FY+FLTF+++H + +G+V  +T
Sbjct:   35 VGRTHVLCSLSRRYGYFPSTCHVGPHWGCMLVTYCLAIGPAFFFFADDMLLGLKVALVV------SICLTTASFTMVACSDPGVVFQDLEVANALQG-DVETG-------------------------------------------IICAQCEVRRPLNASHCSDCGVCVRELDHHCPWTGKCVGERTIKWFYVFLTFISLHCMLIGAVCLVT 197          
BLAST of EWM21471.1 vs. NCBI_GenBank
Match: gi|669151634|ref|XP_008611379.1| (hypothetical protein SDRG_07329 [Saprolegnia diclina VS20] >gi|530736853|gb|EQC35095.1| hypothetical protein SDRG_07329 [Saprolegnia diclina VS20])

HSP 1 Score: 126.716 bits (317), Expect = 2.427e-32
Identity = 70/199 (35.18%), Postives = 99/199 (49.75%), Query Frame = 0
Query:   53 FPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLASFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMTAINNT 251
            FP  C VGP+WPCM  T+ ++  PS  F+      +++ ++ V + S +LT   F++ ACSDPGI+         E  ++P                              A   +G          + C+ C + RP  A HCYECEVC+  LDHHCPWTGKCIG++ L++FYLFLT +T+H+ F  SV     I  T
Sbjct:   57 FPSVCHVGPNWPCMTFTFALILAPS--FICSFDRNITAWVIAVLVLSIVLTFLSFAMVACSDPGII--------REDYVNP------------------------------AGEDEG----------VLCAHCRIRRPANAVHCYECEVCIDGLDHHCPWTGKCIGKRTLKWFYLFLTMITLHLTFSISVLVYYIIRGT 205          
BLAST of EWM21471.1 vs. NCBI_GenBank
Match: gi|635362165|emb|CCI49022.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 125.946 bits (315), Expect = 1.646e-31
Identity = 80/215 (37.21%), Postives = 108/215 (50.23%), Query Frame = 0
Query:   39 IGRMILLCGRKDGI---FPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLA---SFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQ-IPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMT 246
            IG   +LC    G    FP  C +GPD   ML+TYT++  P I    +     +S+ +    A   +  LTL  FS+TACSDPG++F       EER                 N S+    P     T L A  +   S   PV + I C+ C +SRP+ ASHCY+C  C+ +LDHHCPWTGKCIG++ L +FY FL  +T H++      A T
Sbjct:   59 IGSTRVLCTYTSGYIGYFPTTCHIGPDRFWMLLTYTIILAPIIIVASVTQLGETSIELACQTALAVTTFLTLILFSMTACSDPGMIF-------EERK----------------NISLEVYTPGSPPVTLLTAPME---SEDEPVQEMIVCASCHISRPVNASHCYDCNACILELDHHCPWTGKCIGKRTLYWFYAFLASITCHLVVAAITIAYT 247          
BLAST of EWM21471.1 vs. NCBI_GenBank
Match: gi|813131727|ref|XP_012197712.1| (hypothetical protein SPRG_03753 [Saprolegnia parasitica CBS 223.65] >gi|641537989|gb|KDO31833.1| hypothetical protein SPRG_03753 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 124.405 bits (311), Expect = 1.974e-31
Identity = 70/205 (34.15%), Postives = 100/205 (48.78%), Query Frame = 0
Query:   47 GRKDGIFPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLASFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMTAINNT 251
            G     FP  C VGP+WPCM  T+ ++  PS  F+  +   ++  ++ V + S +LT   F++ ACSDPGI+         E  ++P  G                               +G          + C+ C + RP  A HCYEC+VC+  LDHHCPWTGKCIG++ L++FYLFLT +T+H+ F  SV     I  T
Sbjct:   51 GATATAFPSVCHVGPNWPCMTFTFALILAPS--FICSLDRNIAPWVIAVLVLSVVLTFISFAMVACSDPGII--------REDHVNPAGG------------------------------DEG----------VLCAHCRIRRPADAVHCYECDVCIDGLDHHCPWTGKCIGKRTLKWFYLFLTTITLHLTFSISVLVYYIIRGT 205          
BLAST of EWM21471.1 vs. NCBI_GenBank
Match: gi|635362164|emb|CCI49021.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 125.946 bits (315), Expect = 2.053e-31
Identity = 80/215 (37.21%), Postives = 108/215 (50.23%), Query Frame = 0
Query:   39 IGRMILLCGRKDGI---FPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLA---SFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQ-IPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMT 246
            IG   +LC    G    FP  C +GPD   ML+TYT++  P I    +     +S+ +    A   +  LTL  FS+TACSDPG++F       EER                 N S+    P     T L A  +   S   PV + I C+ C +SRP+ ASHCY+C  C+ +LDHHCPWTGKCIG++ L +FY FL  +T H++      A T
Sbjct:   65 IGSTRVLCTYTSGYIGYFPTTCHIGPDRFWMLLTYTIILAPIIIVASVTQLGETSIELACQTALAVTTFLTLILFSMTACSDPGMIF-------EERK----------------NISLEVYTPGSPPVTLLTAPME---SEDEPVQEMIVCASCHISRPVNASHCYDCNACILELDHHCPWTGKCIGKRTLYWFYAFLASITCHLVVAAITIAYT 253          
BLAST of EWM21471.1 vs. NCBI_GenBank
Match: gi|635362166|emb|CCI49023.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 124.405 bits (311), Expect = 2.434e-31
Identity = 80/215 (37.21%), Postives = 108/215 (50.23%), Query Frame = 0
Query:   39 IGRMILLCGRKDGI---FPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLA---SFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQ-IPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMT 246
            IG   +LC    G    FP  C +GPD   ML+TYT++  P I    +     +S+ +    A   +  LTL  FS+TACSDPG++F       EER                 N S+    P     T L A  +   S   PV + I C+ C +SRP+ ASHCY+C  C+ +LDHHCPWTGKCIG++ L +FY FL  +T H++      A T
Sbjct:   29 IGSTRVLCTYTSGYIGYFPTTCHIGPDRFWMLLTYTIILAPIIIVASVTQLGETSIELACQTALAVTTFLTLILFSMTACSDPGMIF-------EERK----------------NISLEVYTPGSPPVTLLTAPME---SEDEPVQEMIVCASCHISRPVNASHCYDCNACILELDHHCPWTGKCIGKRTLYWFYAFLASITCHLVVAAITIAYT 217          
BLAST of EWM21471.1 vs. NCBI_GenBank
Match: gi|698800152|ref|XP_009833105.1| (hypothetical protein H257_08764 [Aphanomyces astaci] >gi|574111824|gb|ETV77318.1| hypothetical protein H257_08764 [Aphanomyces astaci])

HSP 1 Score: 118.627 bits (296), Expect = 3.173e-29
Identity = 70/207 (33.82%), Postives = 102/207 (49.28%), Query Frame = 0
Query:   40 GRMILLCGRKDG--IFPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLASFMLTLFFFSLTACSDPGIVFWQLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIF-LGSVT 243
            GR   LC R      FP    VGP+  CMLITY+++  P++ F+   A  ++S +  + + S  LT   FS+ ACSDPG++     N     ++  ++G                                           I C+ C++ RP+ A HCYECEVC+  +DHHCPWTGKCIG+K L +FYLFL  + +H+ F +G+V 
Sbjct:   42 GRTRFLCQRSANAFYFPHVLHVGPNLGCMLITYSIILAPTLIFVF--ANSLASWVSVLLIVSIALTFLSFSMVACSDPGVIREHYVN-----AVGDDAG-------------------------------------------ILCAHCQIRRPLNAIHCYECEVCIDGMDHHCPWTGKCIGKKTLYWFYLFLWMICIHMTFGIGTVV 198          
The following BLAST results are available for this feature:
BLAST of EWM21471.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553196113|ref|XP_005856272.1|0.000e+0100.00dhhc zinc finger domain containing protein [Nannoc... [more]
gi|675196115|ref|XP_008906942.1|8.409e-3734.01hypothetical protein PPTG_12999 [Phytophthora para... [more]
gi|567958736|gb|ETK84322.1|1.710e-3634.01hypothetical protein L915_10701 [Phytophthora para... [more]
gi|568016727|gb|ETL90904.1|1.531e-3535.68hypothetical protein L917_10498 [Phytophthora para... [more]
gi|669151634|ref|XP_008611379.1|2.427e-3235.18hypothetical protein SDRG_07329 [Saprolegnia dicli... [more]
gi|635362165|emb|CCI49022.1|1.646e-3137.21unnamed protein product [Albugo candida][more]
gi|813131727|ref|XP_012197712.1|1.974e-3134.15hypothetical protein SPRG_03753 [Saprolegnia paras... [more]
gi|635362164|emb|CCI49021.1|2.053e-3137.21unnamed protein product [Albugo candida][more]
gi|635362166|emb|CCI49023.1|2.434e-3137.21unnamed protein product [Albugo candida][more]
gi|698800152|ref|XP_009833105.1|3.173e-2933.82hypothetical protein H257_08764 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9216rna9216Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications