rna9199, rna9199 (mRNA) Nannochloropsis gaditana

Overview
Namerna9199
Unique Namerna9199
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1587
Alignment locationKK037252.1:84515..85882 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g71.511.mrna
Orig protein idgnl|cribi|Naga_100019g71.511
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:84515..85882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g71gene8924Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9199rna9199-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21489.1cds9169Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9199 ID=rna9199|Name=rna9199|organism=Nannochloropsis gaditana|type=mRNA|length=1587bp
AAAGCAGGTATGTCCTTGCTGGGCGTGGACTATGGAAGTGACTCGGAAGA
AGACCGTCCTTTTGCCCCTCCTGCACCCCGGCCCGACCCTCCTGTCTCTC
CTGCTACTACTTTGTCGGTCTCAGGAACCACGGCGGGGAACGCGCCTGGC
TCCGACTCGATCAGTACTGCTGACTCTGGACAGGGAGAAAAGCATAGGAG
GAAGAAAAGAAAGGTCAAGGTGGCTGTGTCCATCCTCCCGTCCCATATTC
AGGCCGCTCTGATGAGGGCAGCGCCCTTGCGACGGAGCACAGGCCAGAAA
GAGGGACCAGTGACAGGCGTCTCTGATGACGAGGATGACGAAAATGACTA
TGCGGATGAGGTGGAGAGGAAGGAACTCGATGAAGAGGAGCTGGAACGAC
GTCGCAGAATCCGTGAACAGGTGGCAGAAAGCAAAGCCGTCGCGAAGAGG
CAGGCCGCCGGCGCTACGGGGCTATTTGCTCTCCTTCCGAAGCCCAAAGT
GGAGAAGGCAATGGAGAAAGCGTTGAAGAAGAGTGGTGACTCGGCCGCGG
AGAAGAAGAAAGATAAGGGGGCGAATATGGAGGCGGATGCAGTCGCTGTC
ATGGGGGCTGCGTCGGACAAGAAAGAGGAGGGGGGCGACCAGGGAGCATC
GAGTGAGAGCGATGGGGCGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGG
AGGAGAAGGAAGAGGAAGGGCTCGGGCTTCTCCACTCCTCCCTCATGGCA
GGCGCCACAGCCGCCGCTCTTCCCCGCGTATCCATCTCTCAGGGAATGCG
CGGCCTAGCCATCCCGGCGCCGACAGCACCGGCGGCTGCGGTGGGAGCAG
AGATAAGGCAGCCGTCCACTAGCCTCAGTGTGGCAGCGTCGTCTGAGCTC
CCTGCTTCTGGTTCGACAGGGACGATGGGTCATGGCGCGGCGACCTCGGG
CCTCGGGGAGTCCGTTGGGTCGAGAGAGCCGCAAGCTTACGCCTCCTATG
GAGGGCTTTGGCAGGGACAGGAGAATGAACGGGCAATGAGGGCGCACCGA
GCAGAGTTGGATGCCTACTACGCCGCCGAGGCGTCACGACAACCCCCGCT
GCAGATGAGTCCGGGTTCCTGTCTGCAGCCTCATGCGCAGGAGGACGATT
TTGAAGTACCTCTTTCAGAGCAGGGTTCTCGGAGGCAAAAACAGCGCTTA
CAGAGAGAGTTGGCGGCAGGGAATTTGTCCGCTGTCAGCAAGCTCGGAGG
ACAGGTCGTAGAGGTGGCGCGTCGGGAGGAAAGCTGGGATCCGTACCGGT
ATGGCCCTCCCAAAAAGAAGGAGAAGGTCTCAATTGCCGCTACCTTTTAC
GATACAAAAACTGGAGAAACGGTCACGACCACAGAGGCTTCTCGAACGCA
CAAAAGAAGACATCAGATAAATACGTTGGCAATACAAGCAGCTGAGCGGG
AGGCGGATCTCTTGGAAGGGAAGGCGCGCAGCATGCAAAGTAAAGCCCAG
ACCCAGGGCAAATATGGGTGGTGAAGTTTTTTTCTTATTTTGGTTTTAAA
ATTGCCATGAGAAAGAAAGAATAGAATCCGTTCGTCC
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protein sequence of rna9199

>rna9199-protein ID=rna9199-protein|Name=rna9199|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
MDPPRSSDSVRSSHSLKSPLLLDHRAPQAISPSAPPAPSVSEDSPQRLYP
PMPEPDSPFLSPSSRFLAADATSDGARWAGAPAPSWRTETAGSPAHRLQN
VPSAPSASAGNTRSHDPAISSLRPSSEFLRQAQALAMRRVTEENLRAEEA
SRQGWQRNVLDHATLRAAEAAAAARRSRPGLEESEGLQVDPSTHDGAPCL
TELLEAGKKREGGREGGRDGGKEGGHHDGYKMAEYDIKEGYQISEYRSIY
DS
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mRNA from alignment at KK037252.1:84515..85882+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9199 ID=rna9199|Name=rna9199|organism=Nannochloropsis gaditana|type=mRNA|length=1368bp|location=Sequence derived from alignment at KK037252.1:84515..85882+ (Nannochloropsis gaditana)
GTTCCTGAGACCGACAAAGTAGTAGCaggagagacaggagggtCGGGCCG
gggtgcaggaggggcaaaagGACGGTCTTCTTCCGAGTCACTTCCATAGT
CCACGCCCAGCAAGGACATACCTGCTTTAACAAATTGTGCGCGCAGGATA
AGAAAAATTTGAGGTGAATGTAAAAAACGACGAGGCAGAATAGGGCGTCG
ACTCGCACAAAATGAGTCTCCCCACCTAGCTGGGAATGCCGCTCAAAAGG
AATCGATGAAATTTTCGTCCCTCTTATGGTTACCGCCTGTCTCTCGTGTG
ATTCGACACAATTTTTATCGCATCGAATGCAACCACAGGATTCCTCGTTA
GCCTTAGCCTGCGCGCATGGATCCACCAAGATCTTCAGACAGTGTACGTT
CGAGTGTAAGCAACAATCCCCCTCCAGACACTCCACCCAGGCAGAGGTCT
AGTCGGATTTTATCATGATTTTCCGTGCGCTTATTTGTTTGCACTTCTAT
TTCCCACCACAACTATGAGACAGCATTCCCTCAAGAGTCCTTTGCTCCTT
GATCACAGAGCGCCCCAAGctatctccccctccgccccgccggcTCCCTC
AGTCTCAGAGGACTCCCCACAACGCCTCTATCCTCCCATGCCAGAGCCTG
ACTcacctttcctctccccttcctcccgcttcttggCCGCTGACGCGACG
AGTGACGGGGCGCGTTGGGCGGGTGCACCGGCTCCGAGCTGGCGGACCGA
GACGGCAGGGTCCCCGGCACACCGCCTCCAAAACGTCCCTTCGGCCCCCT
CTGCGAGCGCAGGCAACACCCGCAGCCACGACCCCgccatttcttccttg
aGGCCGTCGTCTGAGTTCCTCCGTCAAGCGCAAGCGCTGGCTATGCGGCG
CGTTACTGAGGAGAACTTACGCGCAGAAGAGGCATCTCGCCAAGGGTGGC
AGCGCAACGTCCTGGACCATGCGACCctgcgggcggcggaggcggccgca
gCCGCGAGACGATCTCGCccggggctggaggagagcgaAGGTCTGCAGGT
GGATCCGTCCACGCACGACGGGGCGCCATGTTTGACGGAGCTATTGGAAG
Ctggcaagaagagggagggagggagggagggaggccgggacgggggtaaa
gagggagggcaccaTGACGGGTATAAAATGGCGGAGTACGACATCAAGGA
AGGGTACCAAATCAGTGAATACCGAAGTATATACGACTCATGAGGCATAC
AGGAAAGCATAGACTCTCGAGAAAGCAAGGATGACCGCGACGCAGAGGCT
GTGAAATAGGGGGTACTGAAGCGTGCTTGCATGTATAAAGAAAAACAGGA
TCAGGAGGGGAGCAACTT
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Coding sequence (CDS) from alignment at KK037252.1:84515..85882+

>rna9199 ID=rna9199|Name=rna9199|organism=Nannochloropsis gaditana|type=CDS|length=1518bp|location=Sequence derived from alignment at KK037252.1:84515..85882+ (Nannochloropsis gaditana)
ATGGATCCACCAAGATCTTCAGACAGTGTACGTTCGAGTCATTCCCTCAA
GAGTCCTTTGCTCCTTGATCACAGAGCGCCCCAAGctatctccccctccg
ccccgccggcTCCCTCAGTCTCAGAGGACTCCCCACAACGCCTCTATCCT
CCCATGCCAGAGCCTGACTcacctttcctctccccttcctcccgcttctt
ggCCGCTGACGCGACGAGTGACGGGGCGCGTTGGGCGGGTGCACCGGCTC
CGAGCTGGCGGACCGAGACGGCAGGGTCCCCGGCACACCGCCTCCAAAAC
GTCCCTTCGGCCCCCTCTGCGAGCGCAGGCAACACCCGCAGCCACGACCC
CgccatttcttccttgaGGCCGTCGTCTGAGTTCCTCCGTCAAGCGCAAG
CGCTGGCTATGCGGCGCGTTACTGAGGAGAACTTACGCGCAGAAGAGGCA
TCTCGCCAAGGGTGGCAGCGCAACGTCCTGGACCATGCGACCctgcgggc
ggcggaggcggccgcagCCGCGAGACGATCTCGCccggggctggaggaga
gcgaAGGTCTGCAGGTGGATCCGTCCACGCACGACGGGGCGCCATGTTTG
ACGGAGCTATTGGAAGCtggcaagaagagggagggagggagggagggagg
ccgggacgggggtaaagagggagggcaccaTGACGGGTATAAAATGGCGG
AGTACGACATCAAGGAAGGGTACCAAATCAGTGAATACCGAAGTATATAC
GACTCATGAATGGATCCACCAAGATCTTCAGACAGTGTACGTTCGAGTCA
TTCCCTCAAGAGTCCTTTGCTCCTTGATCACAGAGCGCCCCAAGctatct
ccccctccgccccgccggcTCCCTCAGTCTCAGAGGACTCCCCACAACGC
CTCTATCCTCCCATGCCAGAGCCTGACTcacctttcctctccccttcctc
ccgcttcttggCCGCTGACGCGACGAGTGACGGGGCGCGTTGGGCGGGTG
CACCGGCTCCGAGCTGGCGGACCGAGACGGCAGGGTCCCCGGCACACCGC
CTCCAAAACGTCCCTTCGGCCCCCTCTGCGAGCGCAGGCAACACCCGCAG
CCACGACCCCgccatttcttccttgaGGCCGTCGTCTGAGTTCCTCCGTC
AAGCGCAAGCGCTGGCTATGCGGCGCGTTACTGAGGAGAACTTACGCGCA
GAAGAGGCATCTCGCCAAGGGTGGCAGCGCAACGTCCTGGACCATGCGAC
CctgcgggcggcggaggcggccgcagCCGCGAGACGATCTCGCccggggc
tggaggagagcgaAGGTCTGCAGGTGGATCCGTCCACGCACGACGGGGCG
CCATGTTTGACGGAGCTATTGGAAGCtggcaagaagagggagggagggag
ggagggaggccgggacgggggtaaagagggagggcaccaTGACGGGTATA
AAATGGCGGAGTACGACATCAAGGAAGGGTACCAAATCAGTGAATACCGA
AGTATATACGACTCATGA
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Synonyms
Publications