EWM21489.1, cds9169 (CDS) Nannochloropsis gaditana

Overview
NameEWM21489.1
Unique Namecds9169
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:84881..84919 +
Alignment locationKK037252.1:85038..85757 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21489.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g71.511.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:84881..84919 +
KK037252.1supercontigKK037252.1:85038..85757 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21489.1 vs. NCBI_GenBank
Match: gi|585101719|gb|EWM21489.1| (hypothetical protein Naga_100019g71 [Nannochloropsis gaditana])

HSP 1 Score: 502.671 bits (1293), Expect = 9.234e-180
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0 
Query:    1 MDPPRSSDSVRSSHSLKSPLLLDHRAPQAISPSAPPAPSVSEDSPQRLYPPMPEPDSPFLSPSSRFLAADATSDGARWAGAPAPSWRTETAGSPAHRLQNVPSAPSASAGNTRSHDPAISSLRPSSEFLRQAQALAMRRVTEENLRAEEASRQGWQRNVLDHATLRAAEAAAAARRSRPGLEESEGLQVDPSTHDGAPCLTELLEAGKKREGGREGGRDGGKEGGHHDGYKMAEYDIKEGYQISEYRSIYDS 252
            MDPPRSSDSVRSSHSLKSPLLLDHRAPQAISPSAPPAPSVSEDSPQRLYPPMPEPDSPFLSPSSRFLAADATSDGARWAGAPAPSWRTETAGSPAHRLQNVPSAPSASAGNTRSHDPAISSLRPSSEFLRQAQALAMRRVTEENLRAEEASRQGWQRNVLDHATLRAAEAAAAARRSRPGLEESEGLQVDPSTHDGAPCLTELLEAGKKREGGREGGRDGGKEGGHHDGYKMAEYDIKEGYQISEYRSIYDS
Sbjct:    1 MDPPRSSDSVRSSHSLKSPLLLDHRAPQAISPSAPPAPSVSEDSPQRLYPPMPEPDSPFLSPSSRFLAADATSDGARWAGAPAPSWRTETAGSPAHRLQNVPSAPSASAGNTRSHDPAISSLRPSSEFLRQAQALAMRRVTEENLRAEEASRQGWQRNVLDHATLRAAEAAAAARRSRPGLEESEGLQVDPSTHDGAPCLTELLEAGKKREGGREGGRDGGKEGGHHDGYKMAEYDIKEGYQISEYRSIYDS 252
[Close]
BLAST of EWM21489.1 vs. NCBI_GenBank
Match: gi|585101718|gb|EWM21488.1| (hypothetical protein Naga_100019g71 [Nannochloropsis gaditana])

HSP 1 Score: 489.574 bits (1259), Expect = 1.301e-174
Identity = 248/252 (98.41%), Postives = 248/252 (98.41%), Query Frame = 0 
Query:    1 MDPPRSSDSVRSSHSLKSPLLLDHRAPQAISPSAPPAPSVSEDSPQRLYPPMPEPDSPFLSPSSRFLAADATSDGARWAGAPAPSWRTETAGSPAHRLQNVPSAPSASAGNTRSHDPAISSLRPSSEFLRQAQALAMRRVTEENLRAEEASRQGWQRNVLDHATLRAAEAAAAARRSRPGLEESEGLQVDPSTHDGAPCLTELLEAGKKREGGREGGRDGGKEGGHHDGYKMAEYDIKEGYQISEYRSIYDS 252
            MDPPRSSDS    HSLKSPLLLDHRAPQAISPSAPPAPSVSEDSPQRLYPPMPEPDSPFLSPSSRFLAADATSDGARWAGAPAPSWRTETAGSPAHRLQNVPSAPSASAGNTRSHDPAISSLRPSSEFLRQAQALAMRRVTEENLRAEEASRQGWQRNVLDHATLRAAEAAAAARRSRPGLEESEGLQVDPSTHDGAPCLTELLEAGKKREGGREGGRDGGKEGGHHDGYKMAEYDIKEGYQISEYRSIYDS
Sbjct:    1 MDPPRSSDS----HSLKSPLLLDHRAPQAISPSAPPAPSVSEDSPQRLYPPMPEPDSPFLSPSSRFLAADATSDGARWAGAPAPSWRTETAGSPAHRLQNVPSAPSASAGNTRSHDPAISSLRPSSEFLRQAQALAMRRVTEENLRAEEASRQGWQRNVLDHATLRAAEAAAAARRSRPGLEESEGLQVDPSTHDGAPCLTELLEAGKKREGGREGGRDGGKEGGHHDGYKMAEYDIKEGYQISEYRSIYDS 248
The following BLAST results are available for this feature:
BLAST of EWM21489.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101719|gb|EWM21489.1|9.234e-180100.00hypothetical protein Naga_100019g71 [Nannochlorops... [more]
gi|585101718|gb|EWM21488.1|1.301e-17498.41hypothetical protein Naga_100019g71 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9199rna9199Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications