rna9194, rna9194 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9194
Unique Name	rna9194
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1683
Alignment location	KK037252.1:74442..75585 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100019g76.466.mrna
Orig protein id	gnl\|cribi\|Naga_100019g76.466
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:74442..75585 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100019g76	gene8919	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9194	rna9194-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21444.1	cds9164	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:74442..75585-
coding sequence from alignment at KK037252.1:74442..75585-

mRNA sequence

>rna9194 ID=rna9194|Name=rna9194|organism=Nannochloropsis gaditana|type=mRNA|length=1683bp
ATGTTGCGACGGGTGCAATGGATTATTCCTGGCCACAAACGACGCCTCAA
GAGAGCTCTGATAGGCACGCCCTCGTCATGCCGACCTCCCCACTCCGGAA
GACCTGTTGCTGCCACAATTATCAATATACTCGCACGCAGACGGAATGAA
TGTATACTTTTTCGAGATTCCCTCTACTTAAGCACAGCAACAGGCACAGC
AGCATCAACAACACCAGCGCATGCATCGACAACATCAACAGGATGGTCAA
GAGGCAAGGGGCGGCGTCAGACGTATGTCTCCGAACCACAAATATCAGAT
CCCTACGCCGATTTCGGCGCTCCTCACAATTGGTATGTACAGGCCAGGAA
ATTAAAGCGCTCACTCATTTTGCATGTGGGGCCTACAAACTCGGGCAAGA
CTCACGAGGCATTAGAACGCATGCAGAGGGCGGCAAGCGGGATATATTGC
GGGCCTTTGCGACTCCTTGCTTGGGAAGTGTACGAAAAATTGAATTCAAA
GGATGTACCTTGCGAGCTATGGACAGGTCAAGAGGTGAAAGAGGTGGAAG
GAAGCCGGCACATGAGCTGCACGGTGGAAATGGCAGACGTGAGTCGCACC
TATGACGTGGCCGTTGTGGACGAGTGTCAGTTGATCGGAGACAAGGAGAG
GGGATGGGCGTGGACAAGGGTAGTTTTAGGCCTGCCTGCGATAGAAGTCC
ACCTGTGTGGCTCCCCCGCCTTCGTGGAAATCGTGCAAGAGCTGGCCAGG
GAGATAGGGGATGACGTGGAGGTCCGCGAATACGCGCGCCTGAGTCCTTT
GAAGCCCCAGAAGAAAGCCGTCGCAAGCTGGGCGGAGATCGAAGCGGGGG
ACTGTGTGGTTGCCTTCAGCCGTAAAAAACTCTTTGAGCTCAAGAACGAG
ATCGAGGTCGCCACGTCCCCGCGGATGAAGTGTTGCATCGTCTACGGCGG
CCTCCCCCCTGAGGCACGGCGGGAGCAGGCTCGTCTTTTTAACGAGGAAG
GCAGCGGCTGGAACGTGATGGTTGCGACCGACGCCATTGGGATGGGACTC
AACCTGGCAATCGGCCGCGTCATCTTCTCAGCCCTCGAGAAATTTGACGG
CAAAGTGGACCGGCGCCTGAGCGACGCAGAAATCAAACAAATCGCGGGGC
GGGCCGGGCGGTTTAATGGGAAATTTCAGGCCCAGGACCTGTATTTCCTG
TGCGATTTGACAGACATGCTGGGGGTGGCGCGGCTTGTGGAGGAGATCCC
TCTGAACTTGAGGGACCGGTACACCTTCTGCATCGCCCCAGTCGACACCA
AGCAGGCAGAGCTGATGGCCTTCCTACGCTTCTTCGCCCGACAGTACCAG
CACCGGAAGGAAGTTAAACTGGGCATGGACATCTTGTCGGAGCGGGTGCC
GGTGACTCCGTTGGAGCTGAAGCACCTGGAGGAGGTCCACGCGGTGCTGG
ATGTGTACTTGTGGCTGGGCCTCCGTTTTGGCGAGGACGTGTTCGTGGAG
ATGGACGAGGCGGAAGAGGCGGCAGTCAGGTGCAGCGAGCTGATCGAAGA
GGGCCTGAAGACTCTGAAACCCAAGGAGTTCACCTTGGTGAAGGGGGAAG
GGGGGGGCGAGCAAGGGGGGGAGGAGTGGGGTCGTCCAGGCAGCGACGAG
CGCAGGCAGATCGACGCCGGGGAGGGCGGCTGA

protein sequence of rna9194

>rna9194-protein ID=rna9194-protein|Name=rna9194|organism=Nannochloropsis gaditana|type=polypeptide|length=204bp
MSSGKRNRSLAELEDHTHAPNDRTALQGLLYGDQVNYRSLRKMLKEIGEE
KSDRFSKSQVTRTVERYLKSGALSIDDIRKAVDNAGGNGGKKERKIAKPA
AKKAKPSKAGETTPAKAAEKKDDASRKESMAREGCQDSGRVDECVEWLKK
IFEVKASRNSRANSTLSLTSKNKRPSGWNFKLLDVRQRGHEITRLLRHEH
KVRR

mRNA from alignment at KK037252.1:74442..75585-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9194 ID=rna9194|Name=rna9194|organism=Nannochloropsis gaditana|type=mRNA|length=1144bp|location=Sequence derived from alignment at KK037252.1:74442..75585- (Nannochloropsis gaditana)
ATGAGCAGCGGCAAGCGCAATCGCTCGTTGGCGGAATTGGAAGATCATAC
ACATGCCCCCAATGATAGAACAGCGCTGCAGGGCTTGCTTTACGGCGATC
AGGTCAACTACAGGAGCTTGCGGTGCGTGGCAGGCTGTGGGGGGTGATTG
AAGGGAAATCCGGTGAATTATAAAGAGAGTGGGTTTCAGAACCGCAGATC
TAATTTTTTCAAATTCCTTATATGCTCAGAAACTTGCGTACCCTGGCTAT
GGGCGGCAACTATCTCCCATTCGCTCACGTCATCCCCCTTGTCCAAACAC
AGCAAAATGCTGAAAGAAATAGGGGAGGAGAAGTCAGACCGCTTTTCTAA
ATCACAAGTAACTCGCACTGTGGAGGTACGTAGGGGCGCTCTCACGTGAC
GTTTGCGGGTGCCTGGGTCCGACGAGTCTTGTCGTGGGACCTCATCGCAT
TCTGCTCACCACCCACAGCGATATTTGAAAAGCGGTGCCCTGTCTATCGA
TGACATCAGGTAGGGATCTCGAGTGGCGTCACAGGTTGCCTCACGCACGC
CATTAAGACGATACTGCCTCCTTTGTCCTGGTCTCCTCTCTATCCCTCGT
GTCCTAATGGTGCGAATCATATCTTTGCCGGAAGTTATGGTCGCTTACGA
ACCTTTTCATGACTCAACTCGTCACAAATTTTTAATCCGCACCCTGCAGG
AAAGCGGTCGATAATGCTGGCGGGAATGGTGGGAAGAAGGAAAGAAAAAT
TGCGAAACCGGCAGCCAAGAAAGCAAAACCCTCCAAGGCTGGCGAAACGA
CACCGGCAAAGGCTGCGGAGAAAAAGGATGACGTGGAACGGAGGAACTCG
GGAGTGATTGGATTCATTCAAAACCTCTTTTCTCCGTCCAAGAAGTAGGC
GTCGCGCAAGGAAAGTATGGCTCGCGAGGGTTGTCAGGACTCGGGGAGGG
TAGACGAATGTGTGGAGTGGTTGAAGAAAATATTCGAAGTCAAGGCTTCG
AGAAATTCAAGAGCCAATTCGACGTTATCTTTGACCTCCAAAAACAAACG
ACCTTCGGGATGGAATTTTAAATTACTGGACGTCAGACAGCGGGGTCACG
AGATAACTCGCCTTCTCCGCCATGAACACAAAGTAAGGCGATAA

Coding sequence (CDS) from alignment at KK037252.1:74442..75585-

>rna9194 ID=rna9194|Name=rna9194|organism=Nannochloropsis gaditana|type=CDS|length=3075bp|location=Sequence derived from alignment at KK037252.1:74442..75585- (Nannochloropsis gaditana)
GCGTCGCGCAAGGAAAGTATGGCTCGCGAGGGTTGTCAGGACTCGGGGAG
GGTAGACGAATGTGTGGAGTGGTTGAAGAAAATATTCGAAGTCAAGGCTT
CGAGAAATTCAAGAGCCAATTCGACGTTATCTTTGACCTCCAAAAACAAA
CGACCTTCGGGATGGAATTTTAAATTACTGGACGTCAGACAGCGGGGTCA
CGAGATAACTCGCCTTCTCCGCCATGAACACAAAGTAAGGCGATAAGAAA
GCGGTCGATAATGCTGGCGGGAATGGTGGGAAGAAGGAAAGAAAAATTGC
GAAACCGGCAGCCAAGAAAGCAAAACCCTCCAAGGCTGGCGAAACGACAC
CGGCAAAGGCTGCGGAGAAAAAGGATGACCGATATTTGAAAAGCGGTGCC
CTGTCTATCGATGACATCAGCAAAATGCTGAAAGAAATAGGGGAGGAGAA
GTCAGACCGCTTTTCTAAATCACAAGTAACTCGCACTGTGGAGATGAGCA
GCGGCAAGCGCAATCGCTCGTTGGCGGAATTGGAAGATCATACACATGCC
CCCAATGATAGAACAGCGCTGCAGGGCTTGCTTTACGGCGATCAGGTCAA
CTACAGGAGCTTGCGGCGTCGCGCAAGGAAAGTATGGCTCGCGAGGGTTG
TCAGGACTCGGGGAGGGTAGACGAATGTGTGGAGTGGTTGAAGAAAATAT
TCGAAGTCAAGGCTTCGAGAAATTCAAGAGCCAATTCGACGTTATCTTTG
ACCTCCAAAAACAAACGACCTTCGGGATGGAATTTTAAATTACTGGACGT
CAGACAGCGGGGTCACGAGATAACTCGCCTTCTCCGCCATGAACACAAAG
TAAGGCGATAAGAAAGCGGTCGATAATGCTGGCGGGAATGGTGGGAAGAA
GGAAAGAAAAATTGCGAAACCGGCAGCCAAGAAAGCAAAACCCTCCAAGG
CTGGCGAAACGACACCGGCAAAGGCTGCGGAGAAAAAGGATGACCGATAT
TTGAAAAGCGGTGCCCTGTCTATCGATGACATCAGCAAAATGCTGAAAGA
AATAGGGGAGGAGAAGTCAGACCGCTTTTCTAAATCACAAGTAACTCGCA
CTGTGGAGATGAGCAGCGGCAAGCGCAATCGCTCGTTGGCGGAATTGGAA
GATCATACACATGCCCCCAATGATAGAACAGCGCTGCAGGGCTTGCTTTA
CGGCGATCAGGTCAACTACAGGAGCTTGCGGCGTCGCGCAAGGAAAGTAT
GGCTCGCGAGGGTTGTCAGGACTCGGGGAGGGTAGACGAATGTGTGGAGT
GGTTGAAGAAAATATTCGAAGTCAAGGCTTCGAGAAATTCAAGAGCCAAT
TCGACGTTATCTTTGACCTCCAAAAACAAACGACCTTCGGGATGGAATTT
TAAATTACTGGACGTCAGACAGCGGGGTCACGAGATAACTCGCCTTCTCC
GCCATGAACACAAAGTAAGGCGATAAGAAAGCGGTCGATAATGCTGGCGG
GAATGGTGGGAAGAAGGAAAGAAAAATTGCGAAACCGGCAGCCAAGAAAG
CAAAACCCTCCAAGGCTGGCGAAACGACACCGGCAAAGGCTGCGGAGAAA
AAGGATGACCGATATTTGAAAAGCGGTGCCCTGTCTATCGATGACATCAG
CAAAATGCTGAAAGAAATAGGGGAGGAGAAGTCAGACCGCTTTTCTAAAT
CACAAGTAACTCGCACTGTGGAGATGAGCAGCGGCAAGCGCAATCGCTCG
TTGGCGGAATTGGAAGATCATACACATGCCCCCAATGATAGAACAGCGCT
GCAGGGCTTGCTTTACGGCGATCAGGTCAACTACAGGAGCTTGCGGCGTC
GCGCAAGGAAAGTATGGCTCGCGAGGGTTGTCAGGACTCGGGGAGGGTAG
ACGAATGTGTGGAGTGGTTGAAGAAAATATTCGAAGTCAAGGCTTCGAGA
AATTCAAGAGCCAATTCGACGTTATCTTTGACCTCCAAAAACAAACGACC
TTCGGGATGGAATTTTAAATTACTGGACGTCAGACAGCGGGGTCACGAGA
TAACTCGCCTTCTCCGCCATGAACACAAAGTAAGGCGATAAGAAAGCGGT
CGATAATGCTGGCGGGAATGGTGGGAAGAAGGAAAGAAAAATTGCGAAAC
CGGCAGCCAAGAAAGCAAAACCCTCCAAGGCTGGCGAAACGACACCGGCA
AAGGCTGCGGAGAAAAAGGATGACCGATATTTGAAAAGCGGTGCCCTGTC
TATCGATGACATCAGCAAAATGCTGAAAGAAATAGGGGAGGAGAAGTCAG
ACCGCTTTTCTAAATCACAAGTAACTCGCACTGTGGAGATGAGCAGCGGC
AAGCGCAATCGCTCGTTGGCGGAATTGGAAGATCATACACATGCCCCCAA
TGATAGAACAGCGCTGCAGGGCTTGCTTTACGGCGATCAGGTCAACTACA
GGAGCTTGCGGCGTCGCGCAAGGAAAGTATGGCTCGCGAGGGTTGTCAGG
ACTCGGGGAGGGTAGACGAATGTGTGGAGTGGTTGAAGAAAATATTCGAA
GTCAAGGCTTCGAGAAATTCAAGAGCCAATTCGACGTTATCTTTGACCTC
CAAAAACAAACGACCTTCGGGATGGAATTTTAAATTACTGGACGTCAGAC
AGCGGGGTCACGAGATAACTCGCCTTCTCCGCCATGAACACAAAGTAAGG
CGATAAGAAAGCGGTCGATAATGCTGGCGGGAATGGTGGGAAGAAGGAAA
GAAAAATTGCGAAACCGGCAGCCAAGAAAGCAAAACCCTCCAAGGCTGGC
GAAACGACACCGGCAAAGGCTGCGGAGAAAAAGGATGACCGATATTTGAA
AAGCGGTGCCCTGTCTATCGATGACATCAGCAAAATGCTGAAAGAAATAG
GGGAGGAGAAGTCAGACCGCTTTTCTAAATCACAAGTAACTCGCACTGTG
GAGATGAGCAGCGGCAAGCGCAATCGCTCGTTGGCGGAATTGGAAGATCA
TACACATGCCCCCAATGATAGAACAGCGCTGCAGGGCTTGCTTTACGGCG
ATCAGGTCAACTACAGGAGCTTGCG

Synonyms

Publications