EWM21514.1, cds9159 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21514.1 vs. NCBI_GenBank
Match: gi|585101745|gb|EWM21514.1| (trna pseudouridine synthase family protein [Nannochloropsis gaditana]) HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0 Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0 Query: 1 MKGKAKRRHAFSGTLLVVVGIVGTAQLAFGFVRSTFLVHFRDAPPYHRRPTSLREHSQSDTLPSKLLLLHVAYDGSQYKVWTDLDTPDNQHLKGQRLKKRSRPPRRTLSLHHRLGTTLSIIHSHVPPHSLQLTPALLVTGGAHAESQLISYRPPALPFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYARVYHHQRKEWVEEGIKKLQAIFGRSNMTAEELLGKGGERDAGAGQRLLSATMEAGWGPGIGKGRARLARFELEVEGGRSENLDDDEKRQTMVVEWVNTVVGEVFGGERKGVVGTVDRRRGGERSGFNGLVLKSLLFRQRGEEKVLWTRRSLARRQEGGENHKWGGHRGLSPRSNMRR 396 MKGKAKRRHAFSGTLLVVVGIVGTAQLAFGFVRSTFLVHFRDAPPYHRRPTSLREHSQSDTLPSKLLLLHVAYDGSQYKVWTDLDTPDNQHLKGQRLKKRSRPPRRTLSLHHRLGTTLSIIHSHVPPHSLQLTPALLVTGGAHAESQLISYRPPALPFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYARVYHHQRKEWVEEGIKKLQAIFGRSNMTAEELLGKGGERDAGAGQRLLSATMEAGWGPGIGKGRARLARFELEVEGGRSENLDDDEKRQTMVVEWVNTVVGEVFGGERKGVVGTVDRRRGGERSGFNGLVLKSLLFRQRGEEKVLWTRRSLARRQEGGENHKWGGHRGLSPRSNMRR Sbjct: 1 MKGKAKRRHAFSGTLLVVVGIVGTAQLAFGFVRSTFLVHFRDAPPYHRRPTSLREHSQSDTLPSKLLLLHVAYDGSQYKVWTDLDTPDNQHLKGQRLKKRSRPPRRTLSLHHRLGTTLSIIHSHVPPHSLQLTPALLVTGGAHAESQLISYRPPALPFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYARVYHHQRKEWVEEGIKKLQAIFGRSNMTAEELLGKGGERDAGAGQRLLSATMEAGWGPGIGKGRARLARFELEVEGGRSENLDDDEKRQTMVVEWVNTVVGEVFGGERKGVVGTVDRRRGGERSGFNGLVLKSLLFRQRGEEKVLWTRRSLARRQEGGENHKWGGHRGLSPRSNMRR 396
BLAST of EWM21514.1 vs. NCBI_GenBank
Match: gi|1102624354|emb|CRH00502.1| (tRNA pseudouridine synthase, putative [Plasmodium relictum]) HSP 1 Score: 70.4774 bits (171), Expect = 1.459e-9 Identity = 54/170 (31.76%), Postives = 79/170 (46.47%), Query Frame = 0 Query: 67 LLLHVAYDGSQYKVWTDLDTPDNQHLKGQRLKKRSRPP--RRTLSLHHRLGTTLSII---HSHVPPHSL----QLTPALLV-----TGGAHAE---SQLISYRPPALPFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYA 219 +LL V YDG+ Y WT L+ +L + K + P + + + T L+ I H + +L L P + G HA+ Q ISY PFNG+LNQ +LN LL D+++L VL P+DNF +R + YSY + + P R+YA Sbjct: 71 ILLIVDYDGTYYNGWTGLENNSEVYLNATKNYKNKKNPIIKSEIKYNTVQNTILNCILKIHGYGDIENLDSSENLKPFDFIGVSRTDKGVHAKEYVCQYISYEKKP-PFNGNLNQIKRSLNGLLNKDIKILGVLNSPFDNFNVRYHNLGKIYSYNVDIRIPSQPFERNYA 239
BLAST of EWM21514.1 vs. NCBI_GenBank
Match: gi|1103662614|emb|CRG97941.1| (tRNA pseudouridine synthase, putative [Plasmodium gallinaceum]) HSP 1 Score: 66.6254 bits (161), Expect = 2.596e-8 Identity = 53/172 (30.81%), Postives = 79/172 (45.93%), Query Frame = 0 Query: 67 LLLHVAYDGSQYKVWTDLDTPDNQHL------KGQRLKKRSRPPRRTLSLHHRLGTTLSIIHSHVPPHSL----QLTPALLV-----TGGAHAE---SQLISY-RPPALPFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYA 219 L+L + YDG+ Y WT L+ +L K +++ + T + L L I H + +L L P + G HA+ Q ISY R P P NG+LNQ +LN LL D+++L VL P+DNF +R + Y+Y + + P R+YA Sbjct: 73 LILIIDYDGTYYNGWTGLENSSEVYLNATKNYKNKKIHNEKNENKYTTVQNTILNCILKI-HGYGNMENLDSSQNLKPFDFIGVSRTDKGVHAKEYVCQYISYERKP--PCNGNLNQIKRSLNSLLNKDIKILGVLNSPFDNFNVRYHNIGKIYTYNVDIRIPSQPFERNYA 241 The following BLAST results are available for this feature:
BLAST of EWM21514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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