EWM21514.1, cds9159 (CDS) Nannochloropsis gaditana

Overview
NameEWM21514.1
Unique Namecds9159
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:61749..62939 -

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Properties
Property NameValue
Protein idEWM21514.1
Producttrna pseudouridine synthase family protein
Orig transcript idgnl|cribi|Naga_100317g2.5830.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:61749..62939 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR020094PsdUridine_synth_TruA_N
Homology
BLAST of EWM21514.1 vs. NCBI_GenBank
Match: gi|585101745|gb|EWM21514.1| (trna pseudouridine synthase family protein [Nannochloropsis gaditana])

HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0
Query:    1 MKGKAKRRHAFSGTLLVVVGIVGTAQLAFGFVRSTFLVHFRDAPPYHRRPTSLREHSQSDTLPSKLLLLHVAYDGSQYKVWTDLDTPDNQHLKGQRLKKRSRPPRRTLSLHHRLGTTLSIIHSHVPPHSLQLTPALLVTGGAHAESQLISYRPPALPFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYARVYHHQRKEWVEEGIKKLQAIFGRSNMTAEELLGKGGERDAGAGQRLLSATMEAGWGPGIGKGRARLARFELEVEGGRSENLDDDEKRQTMVVEWVNTVVGEVFGGERKGVVGTVDRRRGGERSGFNGLVLKSLLFRQRGEEKVLWTRRSLARRQEGGENHKWGGHRGLSPRSNMRR 396
            MKGKAKRRHAFSGTLLVVVGIVGTAQLAFGFVRSTFLVHFRDAPPYHRRPTSLREHSQSDTLPSKLLLLHVAYDGSQYKVWTDLDTPDNQHLKGQRLKKRSRPPRRTLSLHHRLGTTLSIIHSHVPPHSLQLTPALLVTGGAHAESQLISYRPPALPFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYARVYHHQRKEWVEEGIKKLQAIFGRSNMTAEELLGKGGERDAGAGQRLLSATMEAGWGPGIGKGRARLARFELEVEGGRSENLDDDEKRQTMVVEWVNTVVGEVFGGERKGVVGTVDRRRGGERSGFNGLVLKSLLFRQRGEEKVLWTRRSLARRQEGGENHKWGGHRGLSPRSNMRR
Sbjct:    1 MKGKAKRRHAFSGTLLVVVGIVGTAQLAFGFVRSTFLVHFRDAPPYHRRPTSLREHSQSDTLPSKLLLLHVAYDGSQYKVWTDLDTPDNQHLKGQRLKKRSRPPRRTLSLHHRLGTTLSIIHSHVPPHSLQLTPALLVTGGAHAESQLISYRPPALPFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYARVYHHQRKEWVEEGIKKLQAIFGRSNMTAEELLGKGGERDAGAGQRLLSATMEAGWGPGIGKGRARLARFELEVEGGRSENLDDDEKRQTMVVEWVNTVVGEVFGGERKGVVGTVDRRRGGERSGFNGLVLKSLLFRQRGEEKVLWTRRSLARRQEGGENHKWGGHRGLSPRSNMRR 396          
BLAST of EWM21514.1 vs. NCBI_GenBank
Match: gi|1102624354|emb|CRH00502.1| (tRNA pseudouridine synthase, putative [Plasmodium relictum])

HSP 1 Score: 70.4774 bits (171), Expect = 1.459e-9
Identity = 54/170 (31.76%), Postives = 79/170 (46.47%), Query Frame = 0
Query:   67 LLLHVAYDGSQYKVWTDLDTPDNQHLKGQRLKKRSRPP--RRTLSLHHRLGTTLSII---HSHVPPHSL----QLTPALLV-----TGGAHAE---SQLISYRPPALPFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYA 219
            +LL V YDG+ Y  WT L+     +L   +  K  + P  +  +  +    T L+ I   H +    +L     L P   +       G HA+    Q ISY     PFNG+LNQ   +LN LL  D+++L VL  P+DNF +R   +   YSY + +     P  R+YA
Sbjct:   71 ILLIVDYDGTYYNGWTGLENNSEVYLNATKNYKNKKNPIIKSEIKYNTVQNTILNCILKIHGYGDIENLDSSENLKPFDFIGVSRTDKGVHAKEYVCQYISYEKKP-PFNGNLNQIKRSLNGLLNKDIKILGVLNSPFDNFNVRYHNLGKIYSYNVDIRIPSQPFERNYA 239          
BLAST of EWM21514.1 vs. NCBI_GenBank
Match: gi|1103662614|emb|CRG97941.1| (tRNA pseudouridine synthase, putative [Plasmodium gallinaceum])

HSP 1 Score: 66.6254 bits (161), Expect = 2.596e-8
Identity = 53/172 (30.81%), Postives = 79/172 (45.93%), Query Frame = 0
Query:   67 LLLHVAYDGSQYKVWTDLDTPDNQHL------KGQRLKKRSRPPRRTLSLHHRLGTTLSIIHSHVPPHSL----QLTPALLV-----TGGAHAE---SQLISY-RPPALPFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYA 219
            L+L + YDG+ Y  WT L+     +L      K +++       + T   +  L   L I H +    +L     L P   +       G HA+    Q ISY R P  P NG+LNQ   +LN LL  D+++L VL  P+DNF +R   +   Y+Y + +     P  R+YA
Sbjct:   73 LILIIDYDGTYYNGWTGLENSSEVYLNATKNYKNKKIHNEKNENKYTTVQNTILNCILKI-HGYGNMENLDSSQNLKPFDFIGVSRTDKGVHAKEYVCQYISYERKP--PCNGNLNQIKRSLNSLLNKDIKILGVLNSPFDNFNVRYHNIGKIYTYNVDIRIPSQPFERNYA 241          
The following BLAST results are available for this feature:
BLAST of EWM21514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585101745|gb|EWM21514.1|0.000e+0100.00trna pseudouridine synthase family protein [Nannoc... [more]
gi|1102624354|emb|CRH00502.1|1.459e-931.76tRNA pseudouridine synthase, putative [Plasmodium ... [more]
gi|1103662614|emb|CRG97941.1|2.596e-830.81tRNA pseudouridine synthase, putative [Plasmodium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9189rna9189Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications