rna9189, rna9189 (mRNA) Nannochloropsis gaditana

Overview
Namerna9189
Unique Namerna9189
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2550
Alignment locationKK037252.1:61749..62939 -

Link to JBrowse

Properties
Property NameValue
Producttrna pseudouridine synthase family protein
Orig transcript idgnl|cribi|Naga_100317g2.5830.mrna
Orig protein idgnl|cribi|Naga_100317g2.5830
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:61749..62939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100317g2gene8914Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21514.1cds9159Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9189rna9189-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9189 ID=rna9189|Name=rna9189|organism=Nannochloropsis gaditana|type=mRNA|length=2550bp
AGGACGGCAGCCTCAACCTGCATTAATTAGCCAAGATAAATGCGAATATT
CAAGATCGTATCGTTGTTCGTCCTCCTAGGCTTATCCTGTATTCCATCTT
TAGCCGCCGAGGAATGTGCCAACATCCGACTGACTGCCAAAGTACGTCCT
ACCGCTAAGCGTGGGATCTTGGCAGGCAACGGTCACGCGAAACTTACCGT
CATCCTTCGGAACAAGGATGCAGTTGAAGGTTTGAACATTAAAATAAGCC
TACCCAGCTCGTTGTCGGTCGTACGGACTACGACTAGGCCTCGAACGCCC
TATGTTTTACCATATGCGGTGGAGAATCTGGAGGAGACTGCAATTTATTG
GTCAGACATCGATTTCGCTCGTAGGAATCGAAGAAAGCTCTTTCATGTCA
AAGTACAAGCAGATGATTGTGCTCCCAAGCAGCTGGAAATAAATGCGTTG
GCGTATCTCGCGAACGCTACAACGACGCATTGCACTGTACCGCTATCGAA
ACCAGAGGTTTTGAATATACGATACGCCGAGTCGAAGAGGACGACCACAT
GCGTGCCGACTCCAGCGCCCTCTATCAATCTTGCCGAACCTTTCGTACCG
TTCGGTCTAGGGCAGCGATGTGCTGAAGCGAGTCGTCTGGCGCCTTTCGG
AGACCGACGGTTGCAGGAGCATCTAGAGAGGGGAAGGCTGCAAGACAACA
CTCGCGTGATTTCAGCTCGAGCCCGCCATCTCCAGGGGATTGATACACCA
CAACAGTGCTATGAATACTGCTCGCTCAATGGGGGCGCGCCAGCACCTTT
CTTTTTCAACTGGAACACCGTTGCGAGTGAATGCCTTTGCTGTGCTGGGG
AGTGCACGTTGATCCGGGATCCTGCATTTGACGCATTTAAAGTCATTGTG
GCACACAAGAATATTTCGGGAAACCCTTTATTAGCTGAAAGCTTTTATGA
CGGCCAAGAGAGTGGTGCCACATCAATCTGTGCGGATGACTCGGGAAATT
CATACATAACTGGCTATTTTTTCCAAAAGTTTTCGGTGGGCGATGTTACT
TTAAAGGGGAAAGGATATGCTGATATTTTTGTGTACAAGATAAACCCGAG
AGGCGGTATAATGTGGGCGAGGTCGTTCGGGGCCAAGAATAGTGCTGCCG
GGGGAAGTAGCATCGCTGTGGATACGTCTGGTAACTCTTACGTCACAGGG
TTCTTTCAAGGAGTGATGATAGTTGGTGTCACCATTCTTACACCCGGCTC
AGAGCAGAATGTCTTTGTATTTAAACTTGATTCCGGGGGCCAGGTGGTTT
GGGCAAAGAATTTCGGGACTATAGGGATTCCATACGGCCAGAGCATCGCT
GTGGATTTGTCCGGGAATTCCTACACCACTGGACCTTTCGAGGAAACCAT
GCCCGTTGGTAACACCACTCTCACAGCTGTCGGACTTCAGGATTTTTTCG
TGATCAAACTAGATTCCACTGGTTCCCCCGTTTGGGCCAAGAGCTTCGGC
AGCAATCTAGATGACATGGGGCTTGGCATTACTGTGGATGCATCTGATAA
TAGCTTTATCACCGGATTTTTCAGTGGAAACATGTCGGTGGGTAATACTA
CATTACCTATCATTGGAAGTCAGGATATCTATATGATCAAATTGAATTCC
ACCGGGGAGCCGGTATGGGCGCAAAACTTTGGAGGTACTGGAGAACCGCA
AGGAAATAGCATCGTTGTAGATGCGTCCGGCAACTCCTACACAACTGGGT
TTTTTTACGGACTTTTGAATGTCGGCGATATAAGATTTTTGAGCTTCAGC
AATGCTATTTTTTTGATCAAATTAGACTCTACAGGCAATCCAGTATGGGC
GAAAAACTTTACGAGCGTAGGTACCGCAGAGGGAAACGGCATTGCAGTGG
ATGCATTCGAAAATTCCTACATCACCGGTGAATTTAACGGAAATTTGTCT
GTAGGAAGCTTCTCACTGACGGCACCGGAGAGGCAAGCCATGTGTCTTCT
CAAATTAGATCCCACAGGTAACCCGATATGGGCTCAAAACTATGGCGGCT
CCGTTTCCTCCTCAGGAACGGGTATTGATGTGGATTCTTCCGGCAATGTC
TACAACGCTGGAAGCTTTGAAGGAGACATGGAAGTAGGAAGCGCCACACT
CACATCTCCTGGTGTCAAAAGCCCCTACATAATCAAGCTAGGCCCCTAAT
CGAAATGAATTCTATTTCAGTGGGTGTACAAATCATGACAAATTTCAATG
ACACCACAAAATTAATCATTCAAGGGCTATCGTTGTGCACTCGTGTACAG
TGACAAAATAATTTGTATGCCCAAAGGAACTAAGAAGTCTCTACATCTCC
AAAATATGTCTTCAACATTCAACATTGGCATGGCATTCTTACCCTGCTAT
GTTCTCGGCAACTCATTAACGCCAAAGCTTTAAGCCTCTCGAAAACTGGT
CGGCAAGCAGCCAGTGCGATTTGTAGTTGTAATATTTGGGATGTTTTCTT
GGAAAAGGGGCGATTCTCTCTGAAGAAATATGGCAGATCATCGTCGTGCT
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protein sequence of rna9189

>rna9189-protein ID=rna9189-protein|Name=rna9189|organism=Nannochloropsis gaditana|type=polypeptide|length=396bp
MKGKAKRRHAFSGTLLVVVGIVGTAQLAFGFVRSTFLVHFRDAPPYHRRP
TSLREHSQSDTLPSKLLLLHVAYDGSQYKVWTDLDTPDNQHLKGQRLKKR
SRPPRRTLSLHHRLGTTLSIIHSHVPPHSLQLTPALLVTGGAHAESQLIS
YRPPALPFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVT
YSYTIILGGLEDPTLRHYARVYHHQRKEWVEEGIKKLQAIFGRSNMTAEE
LLGKGGERDAGAGQRLLSATMEAGWGPGIGKGRARLARFELEVEGGRSEN
LDDDEKRQTMVVEWVNTVVGEVFGGERKGVVGTVDRRRGGERSGFNGLVL
KSLLFRQRGEEKVLWTRRSLARRQEGGENHKWGGHRGLSPRSNMRR
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mRNA from alignment at KK037252.1:61749..62939-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9189 ID=rna9189|Name=rna9189|organism=Nannochloropsis gaditana|type=mRNA|length=1191bp|location=Sequence derived from alignment at KK037252.1:61749..62939- (Nannochloropsis gaditana)
ATGAAGGGTAAAGCCAAACGCCGTCACGCTTTTTCTGGTACTCTACTTGT
GGTCGTCGGTATCGTGGGCACCGCTCAACTTGCTTTTGGCTTCGTTAGAT
CCACCTTTCTCGTCCATTTCAGGGACGCTCCTCCCTACCACAGGCGTCCC
ACGTCGCTTCGGGAGCACAGTCAAAGCGACACGCTGCCCTCAAAACTACT
TCTGCTCCACGTAGCCTATGATGGCAGCCAGTACAAGGTCTGGACGGACC
TCGATACTCCAGACAACCAACATCTTAAGGGTCAAAGACTCAAGAAACGG
AGCCGCCCTCCTCGGCGCACGCTTTCGTTGCATCACCGCCTCGGTACAAC
ACTCTCCATCATTCACAGTCACGTACCTCCACATTCCCTACAACTTACTC
CGGCTCTTTTAGTGACCGGGGGTGCCCACGCCGAATCGCAGCTTATCTCT
TACCGGCCGCCTGCCCTTCCTTTCAACGGAGACCTGAATCAGACCGCCCA
TGCCTTAAACAGGCTTTTGCCCGCCGATGTGAGGGTGCTGGAGGTGCTAT
TTCCCCCATGGGACAATTTTTGTATGCGTCGAGATCTGGTTAGCGTCACG
TATTCGTACACGATCATCCTCGGCGGGTTGGAAGACCCGACACTGCGGCA
CTACGCTCGGGTATACCACCATCAGAGGAAGGAATGGGTGGAGGAGGGGA
TTAAGAAGCTGCAAGCAATTTTTGGACGCTCAAATATGACGGCAGAGGAG
CTGCTTGGAAAAGGAGGGGAAAGGGATGCTGGGGCGGGGCAGAGGTTGCT
GAGTGCGACGATGGAGGCGGGGTGGGGACCAGGCATTGGTAAGGGCCGGG
CACGGCTAGCGCGGTTTGAGCTAGAGGTGGAGGGGGGGCGGTCCGAAAAT
CTTGATGACGACGAGAAAAGACAGACCATGGTAGTGGAGTGGGTGAACAC
GGTTGTTGGCGAGGTTTTTGGGGGGGAGAGGAAAGGGGTGGTTGGGACGG
TGGACAGGAGGCGGGGGGGTGAAAGGTCAGGTTTCAACGGCTTGGTCCTC
AAATCGTTACTTTTTCGCCAGCGAGGTGAAGAGAAGGTATTGTGGACACG
ACGCTCATTGGCTCGGAGGCAGGAAGGAGGGGAAAACCACAAGTGGGGGG
GGCATAGAGGCCTTTCTCCTCGGAGTAACATGAGGAGATGA
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Coding sequence (CDS) from alignment at KK037252.1:61749..62939-

>rna9189 ID=rna9189|Name=rna9189|organism=Nannochloropsis gaditana|type=CDS|length=1191bp|location=Sequence derived from alignment at KK037252.1:61749..62939- (Nannochloropsis gaditana)
ATGAAGGGTAAAGCCAAACGCCGTCACGCTTTTTCTGGTACTCTACTTGT
GGTCGTCGGTATCGTGGGCACCGCTCAACTTGCTTTTGGCTTCGTTAGAT
CCACCTTTCTCGTCCATTTCAGGGACGCTCCTCCCTACCACAGGCGTCCC
ACGTCGCTTCGGGAGCACAGTCAAAGCGACACGCTGCCCTCAAAACTACT
TCTGCTCCACGTAGCCTATGATGGCAGCCAGTACAAGGTCTGGACGGACC
TCGATACTCCAGACAACCAACATCTTAAGGGTCAAAGACTCAAGAAACGG
AGCCGCCCTCCTCGGCGCACGCTTTCGTTGCATCACCGCCTCGGTACAAC
ACTCTCCATCATTCACAGTCACGTACCTCCACATTCCCTACAACTTACTC
CGGCTCTTTTAGTGACCGGGGGTGCCCACGCCGAATCGCAGCTTATCTCT
TACCGGCCGCCTGCCCTTCCTTTCAACGGAGACCTGAATCAGACCGCCCA
TGCCTTAAACAGGCTTTTGCCCGCCGATGTGAGGGTGCTGGAGGTGCTAT
TTCCCCCATGGGACAATTTTTGTATGCGTCGAGATCTGGTTAGCGTCACG
TATTCGTACACGATCATCCTCGGCGGGTTGGAAGACCCGACACTGCGGCA
CTACGCTCGGGTATACCACCATCAGAGGAAGGAATGGGTGGAGGAGGGGA
TTAAGAAGCTGCAAGCAATTTTTGGACGCTCAAATATGACGGCAGAGGAG
CTGCTTGGAAAAGGAGGGGAAAGGGATGCTGGGGCGGGGCAGAGGTTGCT
GAGTGCGACGATGGAGGCGGGGTGGGGACCAGGCATTGGTAAGGGCCGGG
CACGGCTAGCGCGGTTTGAGCTAGAGGTGGAGGGGGGGCGGTCCGAAAAT
CTTGATGACGACGAGAAAAGACAGACCATGGTAGTGGAGTGGGTGAACAC
GGTTGTTGGCGAGGTTTTTGGGGGGGAGAGGAAAGGGGTGGTTGGGACGG
TGGACAGGAGGCGGGGGGGTGAAAGGTCAGGTTTCAACGGCTTGGTCCTC
AAATCGTTACTTTTTCGCCAGCGAGGTGAAGAGAAGGTATTGTGGACACG
ACGCTCATTGGCTCGGAGGCAGGAAGGAGGGGAAAACCACAAGTGGGGGG
GGCATAGAGGCCTTTCTCCTCGGAGTAACATGAGGAGATGA
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Synonyms
Publications