rna9186, rna9186 (mRNA) Nannochloropsis gaditana

Overview
Namerna9186
Unique Namerna9186
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length4038
Alignment locationKK037252.1:50187..50781 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100317g5.5829.mrna
Orig protein idgnl|cribi|Naga_100317g5.5829
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:50187..50781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100317g5gene8911Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9186rna9186-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21513.1cds9156Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9186 ID=rna9186|Name=rna9186|organism=Nannochloropsis gaditana|type=mRNA|length=4038bp
AAATCTTTGGCTAAAACGCACCAGGAGCCCTGCCGCAAGTCCTGCTATTT
CCTACTTACATCCCTCCGCAACACCCGCGACAGACCGGCGTATAAGCCCC
AAAATCAAGATTGTCTCTTGAAGAAAGAGTGTGCGACCGGGTGCCTGTTG
CCGAGAAGCTTTGAAAATAATTTATACCATGGTTTTCTATTCTTCAACCT
CCTCTACCAGCACCGCAATAGTCTCGCGAGCAACGACATTCCTTTTTTCA
CGGCGCCTTCACTTCATTGTAAGCCTTCTAGTACTTTGTGGCACCCTTTT
ACCTGTTTCATCTGGGACGAGAGAGGCTGAATCAGGCCCGGCTAGTTCTG
CGCCAGGATTTTCCGCCGCTCCCCCCCCACTCTCGTTGCGCCCCCCCCCA
AAGGCTCGGGAGGAAACGATGAGCTCTCCTCATTACATGCCAAAATCAGA
AGGCGTAGAAGAGGTAAATTTGTCCGCCATTTCGGATACCATGCCGCTCG
ACCCGGCTTTGTCTTCCTCCGCCTCCAAGCCCGATCCTACCTCAAGCGCC
ACCTCGCCTCTCCCCCGAGACCAAGCACCAAAAATTCGCACTGCAAGAAG
AATGCCTCCCATTGCCCTGCCCTCCTTTATTGGTTTGGAGAGCGGACGGC
CTGCGGCGGTCCTGTACCCCCCGCACGCGGCCCTGTCCCCTCCCCTTCCT
CTCGTCGTGGTCCTCCATGCCTGGGGCAGCAACGCCAGCGAACACGCTGC
CTACCTCGGGGTGTCCGAGCGTCTCTCTCGCTTCCAATTTATCGCCCTGC
TCCCCAACGGCATTAAAAACAGCAAGGGCTACCGGTTTTGGAACGCCCCT
GCCTGTTGCAACCGGGAGGGCATCGCTGTGGACGACCTCGGCTACCTGAC
CGACTTGCTCCAGGAGGCTCGCGACCGCCTCCCCGTGGATCCAGCCCGCG
TTTACCTCACGGGCCACTCCAACGGGGGCCAAATGGCTCTCTACCTTGCC
TGCCGGAGCGGCGGCGAGGGCCATATTCGGGGCCTGGTGTCCATCGCCGG
CTTCGGCCCCCCCCCCGCCTGCCCCGCGCCTCGACCCTGCTCCGCCCTCT
TCATCCACGGAACGGACGATGCCGTGGTGCCCTTCGACACGAGTCTGCAG
GCCTTTGACAAGTGGGTGGAGGGGGAAGGCTGTCTGGCGGAGTCCCCTCT
CTCTACTCCTCCCGCCGCCTCCCTCCCCTCCTCCGCCATCGGCGCCTCTT
CCCCGCCCACTCCCACGGCCTCGTCCCAGCCCTACTGCCGCCTCAGCAAG
CCCAGCGACCCCTCATCCATGTTGAATCCCTCGGAGTTCCCCGCTCCCAT
CCTCCCTTTCTCGTCCCCGCACTCGCCAGCCTCGACCTGTTCCCAGTTCA
CCCGCGACTTGGACTGCGACCCTTCCTTCGCGGTCGGCGCCAAGGACCCT
CGCCTGAGCTCGTACCGCGACGCAAACTGCGCATTGAGAGGTGAGGAGAC
GGTGGTCACTCAGTACGTGGGCTGTGGGGGTGAAAAAGGCGCGAACGTGA
GCTTCTGGCGGATGGAGGGGGCCTCGCATGTGCCTGCCTTTAGTCCAGAT
TCCTTGGACGCCATGCTCTCCTTCTTGCTGGATATGTAGGTGAGGCGAAG
AGGGGAGATGCACTGGAGAAGGAGGAGCGCGATAGGTTTTGACTTGGAAG
AATGAGCGGTGTAGGTGCCGTATGAAGGCGGGGAAATGCTGACCGTCGCA
GTAGGAAATTCGATCCCACCCTGATCCTCGTCGAGAGATGATGTTCGAGA
ATGGTGCTGAGGGAGACTTGAAGGGAATTGTACATGCCCCTATTTCTCAA
ATACTTGTGAAGATTCCGCACGCGGGCATGCTAGCAGATTTTCATGAGTT
TTGGGTGTTCATCTACCTTCAGGAAGGACACCATGTGCATGGAAGAGAGG
CGCTGGTATGGACAAATACGTCGTCCCGCACCCGCGTATTTGTTGCGCGA
GAACGTATGCTCGTGCTGCATTTGTATCAAAAGTATACCCTTTTGTCTCA
TTTGAATTAAAAAATGCATGCATGCACACAATTTGGAGAATCGAGGTGTT
TTCAGGTATATCTATATATCTATATATATATGTGTGTGTATATATCTCTA
AGCGTGCATAGCTGTAGAATGGCAATTGTAAATCGTTGGAATCCTGGCAG
ATATTTGTCGATTCTCTTTTAGGCGTCATTACAAAGAAGATTTTGAGCAC
GTGCGTGGGGCTTTCACGAATTTGAGGCAGCGTGCATGTCATGGGAGGTT
GTGTTAGCAATTGTAAGCAAATGACGAGAGTATGATGGGGGGAACTGAAA
CACTCATGCCCAGAAGAAATTCTCCGACATCTTGTTTTCTTTAAGCACAT
CTTATTAACAAAGTCGTAGGTAGAAAAATAAATTTTGTGAGTGGGTCATG
GTGCAAGGTCGAGGTCTGAAATACGCTCCTGACAAGCTTTTTTAGCGACT
TGCGATGTGGGCTGTAGTGTGTATATCTGGCGATTACTATTGCCATACCA
TGCCGGGAGGTTCAAGCGAGAACCAAGAGAAATGCACTTCACTAGCGGAA
GTAAGTCGCGGTAGTCAGAGGCGTGTTTCCTTGCGCCTAGTTACGTAAGT
CAGCATTGGTGAGATAGTTTTATCCCCAGCCATCATTAAAGAAATGCGCA
CCCACGAGGAAGATCTATGTCTCTATTCCACAGACCAAAACCATGCTGAG
GATCAAAGCATCCATTGCGAAACACAAATAGTGCCATAATGGGGGTGATC
ATCATTCTCTTTGTATTATGTCTTGCCATCTTTGTAAGGACTTCGATCTT
ATCGGATGCTGCAATTCCACAAGATTGGGCCGAAGGGATAGGCTCCTATG
ACATACTTTACAATCGCGAGCCGACAGAGCCGCACTTGCTCCCTGTCCTC
GGAAACGGAGTGATATCCTGGCAAATCGACAGTCCCTTTATTCTCGTCAA
TGGCCTCTACACACGTCGAGGGAACGATTCCGCGCGTGTTTGTTTGGCCC
GTTTGCCGTCTCTGCTGTCGGTTCATATACGGCCCTCTTTCGGGGCTGTT
GAGGTTTCTCTAAACCCCGTCATTCGAAACGACAGCCTTCCCATCCTTTC
CATTCTATCAAAAACGACCTCGAACTTTGTCGGAGAAGCGTTGGACCTGC
GGAGCGGGAGTTTCATGCGGCGTCTCCGCTTTTTCCGTTCTGCAAGTGAG
GACGTTGTTCGTACGGAGGCCGTTGTCGACGTCGAGCAGAGATGGTACGC
TCACAGATCCATCCACTCCCTGCTCGTGTTGGAGGTCCAAGCGACGACGC
GGACACCGACTGCATTGTCAGCGGAGCCGATGGAATTGCACATGGAACTA
AATACAGGCGTGGGAGATAGCACGGAGGAGGAAACGGGCGAAGCAGAGGA
ACCGGGAGAGGGAAAGGAGGAAGGAGGCAGTCGTCGCGCTATCCATGGGA
TACGAGGGCGCAGTCATTCAAAGCAGGGCGCTGAAGCGGACGTGGTTTTC
AGGAACCTTTCGGCCGAGTACCCGGGTCTATCTGTGTACACGGGCGTCTT
GCATGCCCCCGAGAACGCCTCTGCCGCCCCACCATCCATCGCCCTCGTCT
CCACACCCCTCCCCAGGTCGCTCCTTATCACCAACAATGAAACCTGGTAC
TTTCTTTCCGCTGTGCGCACCTCTTTGGGAGCGAGAGGGCGGGACGGAGG
AAGGGAGGGAGGGGGAGCCGATCGCCTGTTGCAGGAAACCTTGTTAGACC
ACCGACTCGCCCAAGGAATGGCAGCTTCTGGAGAGCTCTATGAACTGCAC
AAAGACGACTGGAAGCAGTGGTGGAGGCAGGTGGGGATAGAAATGGAGAC
GAGGGGAGGGCGGGAGGAAGGCCAAAAGGGAGGGTGGGAAGGAGGGCGGG
AGGGAGGGACCGGAGGGTCGGGCGTGATTCCGTTACCGGCGGCTGTGAAT
GCCTCCTTGTATGCCCTGGGAAGCACAGCTCGGGACGA
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protein sequence of rna9186

>rna9186-protein ID=rna9186-protein|Name=rna9186|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
REGGAWDLDPERFECLSAAEVKEVQRALKITKAQVVLAYECLKLLQRPSL
LLLPPASPTGPLLVLGSSGGKRAGGREGGRAEGRERGRAAPVLPPDGEAP
AGQGNRRRLRGEKGRAACLPGREIQGTSGGAGGGMSEGRGVGGGKRGSGG
GRVREDFGKTEAGTRDMIEWKREMSKEM
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mRNA from alignment at KK037252.1:50187..50781+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9186 ID=rna9186|Name=rna9186|organism=Nannochloropsis gaditana|type=mRNA|length=595bp|location=Sequence derived from alignment at KK037252.1:50187..50781+ (Nannochloropsis gaditana)
agggagggaggggcctggGATTTGGATCCCGAGAGGTTCGAATGCCTGAG
CGCggcggaggtgaaggaggtgcAGAGGGCCCTGAAGATTACCAAGGCAC
AGGTGGTGCTCGCTTACGAGTGCCTGAAGCTTCTGcaacgcccctccctc
ctcctcctcccccctgcaaGTCCGACCGGGCCCCTGCTTGTCCTCGGTTC
atcgggaggaaagagagcgggagggcgggagggaggaagggcggaagggc
gggaaagaggaagggcggcacCGGTGCTTCCGCCTGATGGTGAAGCGCCG
GCTGGCCAGGGAAATAGGCGGCGACTtcgaggggaaaaaggaagagctGC
GTGCCTACCTGGACGAGAAATTCAGGGAAcgagtggaggagctggaggcg
gtaTGTCGGAAGGCcggggtgtgggaggggggaagagagggagcggcggg
gggcgagtgagggaggatTTCGGCAAAACGGAGGCAGGGACGCGAGATAT
GATTGAATGGAAGCGAGAGATGTCCAAGGAAATGTGAAAGGACAGGGTAG
AAGGGATGCTTAAATTCTGCCAGtcgttcttctccttcccctcgg
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Coding sequence (CDS) from alignment at KK037252.1:50187..50781+

>rna9186 ID=rna9186|Name=rna9186|organism=Nannochloropsis gaditana|type=CDS|length=537bp|location=Sequence derived from alignment at KK037252.1:50187..50781+ (Nannochloropsis gaditana)
agggagggaggggcctggGATTTGGATCCCGAGAGGTTCGAATGCCTGAG
CGCggcggaggtgaaggaggtgcAGAGGGCCCTGAAGATTACCAAGGCAC
AGGTGGTGCTCGCTTACGAGTGCCTGAAGCTTCTGcaacgcccctccctc
ctcctcctcccccctgcaaGTCCGACCGGGCCCCTGCTTGTCCTCGGTTC
atcgggaggaaagagagcgggagggcgggagggaggaagggcggaagggc
gggaaagaggaagggcggcacCGGTGCTTCCGCCTGATGGTGAAGCGCCG
GCTGGCCAGGGAAATAGGCGGCGACTtcgaggggaaaaaggaagagctGC
GTGCCTACCTGGACGAGAAATTCAGGGAAcgagtggaggagctggaggcg
gtaTGTCGGAAGGCcggggtgtgggaggggggaagagagggagcggcggg
gggcgagtgagggaggatTTCGGCAAAACGGAGGCAGGGACGCGAGATAT
GATTGAATGGAAGCGAGAGATGTCCAAGGAAATGTGA
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Synonyms
Publications