EWM21554.1, cds9119 (CDS) Nannochloropsis gaditana

Overview
NameEWM21554.1
Unique Namecds9119
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:447932..448047 -
Alignment locationKK037251.1:447148..447589 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21554.1
Productwd sam and u-box domain-containing protein 1
Orig transcript idgnl|cribi|Naga_100564g2.6264.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:447932..448047 -
KK037251.1supercontigKK037251.1:447148..447589 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR003613Ubox_domain
Homology
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|585101803|gb|EWM21554.1| (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 368.237 bits (944), Expect = 8.709e-129
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query:    1 MQAHDSTATTTSTTNAQVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKNLSRALEPLSAEEEERGKAPRESEGQQAGVWVGHSPEGTSSEEEEEEEEEEEDGEESGSDSSEEEAEAQGVLRVLSALPARSRWQSRRRGRVGGVVTSRA 185
            MQAHDSTATTTSTTNAQVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKNLSRALEPLSAEEEERGKAPRESEGQQAGVWVGHSPEGTSSEEEEEEEEEEEDGEESGSDSSEEEAEAQGVLRVLSALPARSRWQSRRRGRVGGVVTSRA
Sbjct:    1 MQAHDSTATTTSTTNAQVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKNLSRALEPLSAEEEERGKAPRESEGQQAGVWVGHSPEGTSSEEEEEEEEEEEDGEESGSDSSEEEAEAQGVLRVLSALPARSRWQSRRRGRVGGVVTSRA 185          
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|1126281694|ref|XP_019661559.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X2 [Ailuropoda melanoleuca])

HSP 1 Score: 82.8037 bits (203), Expect = 4.944e-16
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92
            +V T+S  + D  LCPI+R +M+DPV+  DGYSYE+E++E W ++  RTSPMT LVLPS  L  N  LK  +SR LE
Sbjct:  158 KVKTLSSGIPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 234          
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|1111076832|ref|XP_019312818.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X3 [Panthera pardus] >gi|1126447192|ref|XP_019693707.1| PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X4 [Felis catus])

HSP 1 Score: 82.0333 bits (201), Expect = 7.581e-16
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92
            +V T+S  + D  LCPI+R +M+DPV+  DGYSYE+E++E W ++  RTSPMT LVLPS  L  N  LK  +SR LE
Sbjct:  158 EVKTLSSGIPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 234          
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|149047776|gb|EDM00392.1| (WD repeat, SAM and U-box domain containing 1, isoform CRA_b [Rattus norvegicus])

HSP 1 Score: 77.411 bits (189), Expect = 1.386e-15
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0
Query:   20 TVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92
            ++S  + D  +CPI+R +M+DPV+  DGYSYERE++E+W  +  RTSPMT L LPS  L  N  LK  ++R LE
Sbjct:    3 SLSSGIPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTNLALPSLVLTPNRTLKMAINRWLE 76          
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|1212218106|ref|XP_021558781.1| (WD repeat, SAM and U-box domain-containing protein 1 isoform X3 [Neomonachus schauinslandi])

HSP 1 Score: 80.4925 bits (197), Expect = 2.728e-15
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92
            +V T+S  + D  LCPI+R +M++PV+  DGYSYE+E++E W ++  RTSPMT LVLPS  L  N  LK  +SR LE
Sbjct:  158 KVKTLSSGIPDEFLCPITRELMKEPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 234          
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|149639594|ref|XP_001510072.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X1 [Ornithorhynchus anatinus] >gi|620978452|ref|XP_007669346.1| PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X1 [Ornithorhynchus anatinus] >gi|620978454|ref|XP_007669347.1| PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X1 [Ornithorhynchus anatinus])

HSP 1 Score: 82.8037 bits (203), Expect = 3.237e-15
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 0
Query:   15 NAQVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92
            N ++ ++S  + D  LCPI+R +M+DPV+  DGYSYE+E++E WF++  RTSPMT LVLPS  L  N  LK  ++R LE
Sbjct:  394 NIKMDSLSSGIPDEFLCPITRELMKDPVIAADGYSYEKEAMENWFSKKKRTSPMTNLVLPSLILTPNRTLKMAINRWLE 472          
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|62702115|gb|AAX93043.1| (unknown, partial [Homo sapiens])

HSP 1 Score: 80.1073 bits (196), Expect = 3.480e-15
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92
            +V ++S  + D  +CPI+R +M+DPV+  DGYSYE+E++E W ++  RTSPMT LVLPS  L  N  LK  ++R LE
Sbjct:  139 KVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLE 215          
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|1111076818|ref|XP_019312786.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X1 [Panthera pardus] >gi|1111076830|ref|XP_019312813.1| PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X1 [Panthera pardus])

HSP 1 Score: 81.6481 bits (200), Expect = 6.176e-15
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92
            +V T+S  + D  LCPI+R +M+DPV+  DGYSYE+E++E W ++  RTSPMT LVLPS  L  N  LK  +SR LE
Sbjct:  305 EVKTLSSGIPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 381          
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|859765992|ref|XP_012907420.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X4 [Mustela putorius furo])

HSP 1 Score: 81.6481 bits (200), Expect = 6.841e-15
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92
            +V T+S  + D  LCPI+R +M+DPV+  DGYSYE+E++E W ++  RTSPMT LVLPS  L  N  LK  +SR LE
Sbjct:  373 KVKTLSSGIPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 449          
BLAST of EWM21554.1 vs. NCBI_GenBank
Match: gi|1126447188|ref|XP_019693705.1| (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X3 [Felis catus] >gi|1126447190|ref|XP_019693706.1| PREDICTED: WD repeat, SAM and U-box domain-containing protein 1 isoform X3 [Felis catus])

HSP 1 Score: 81.2629 bits (199), Expect = 7.024e-15
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   17 QVTTVSEAVFDLLLCPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKN-LSRALE 92
            +V T+S  + D  LCPI+R +M+DPV+  DGYSYE+E++E W ++  RTSPMT LVLPS  L  N  LK  +SR LE
Sbjct:  305 EVKTLSSGIPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSVVLTPNRTLKMAISRWLE 381          
The following BLAST results are available for this feature:
BLAST of EWM21554.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101803|gb|EWM21554.1|8.709e-129100.00wd sam and u-box domain-containing protein 1 [Nann... [more]
gi|1126281694|ref|XP_019661559.1|4.944e-1653.25PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
gi|1111076832|ref|XP_019312818.1|7.581e-1653.25PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
gi|149047776|gb|EDM00392.1|1.386e-1550.00WD repeat, SAM and U-box domain containing 1, isof... [more]
gi|1212218106|ref|XP_021558781.1|2.728e-1551.95WD repeat, SAM and U-box domain-containing protein... [more]
gi|149639594|ref|XP_001510072.1|3.237e-1550.63PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
gi|62702115|gb|AAX93043.1|3.480e-1549.35unknown, partial [Homo sapiens][more]
gi|1111076818|ref|XP_019312786.1|6.176e-1553.25PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
gi|859765992|ref|XP_012907420.1|6.841e-1553.25PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
gi|1126447188|ref|XP_019693705.1|7.024e-1553.25PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9149rna9149Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications